| Port details on branch 2022Q2 |
- peak-classifier Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
- 0.1.4.13_1 biology
 =0      0.1.4.13_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-06-14 16:45:08
- Last Update: 2024-04-05 00:43:40
- Commit Hash: ce6eaa8
- License: BSD2CLAUSE
- WWW:
- https://github.com/auerlab/peak-classifier
- Description:
- Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
Peaks are provided in a BED file sorted by chromosome and position. The GFF
must be sorted by chromosome and position, with gene-level features separated
by ### tags and each gene organized into subfeatures such as transcripts and
exons. This is the default for common data sources.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- peak-classifier>0:biology/peak-classifier
- To install the port:
- cd /usr/ports/biology/peak-classifier/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/peak-classifier
- pkg install peak-classifier
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: peak-classifier
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1694019604
SHA256 (auerlab-peak-classifier-0.1.4-13-gfb89af3_GH0.tar.gz) = 83fd1032eb3ab8b92ffbbf9f06da1b18cf93a39bc01aba249961550e548c0df1
SIZE (auerlab-peak-classifier-0.1.4-13-gfb89af3_GH0.tar.gz) = 87429
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- bedtools : biology/bedtools
- py39-matplotlib>0 : math/py-matplotlib@py39
- python3.9 : lang/python39
- Library dependencies:
-
- libxtend.so : devel/libxtend
- libbiolibc.so : biology/biolibc
- This port is required by:
- for Run
-
- biology/atac-seq
- biology/chip-seq
Configuration Options:- No options to configure
- Options name:
- biology_peak-classifier
- USES:
- localbase python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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