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Port details
biolibc Low-level high-performance bioinformatics library
0.2.6.4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.2.6_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-21 15:10:53
Last Update: 2024-05-19 13:40:24
Commit Hash: 93db8fd
License: BSD2CLAUSE
WWW:
https://github.com/auerlab/biolibc
Description:
Biolibc is a library of fast, memory-efficient, low-level functions for processing biological data. Like libc, it consists of numerous disparate, general-purpose functions which could be used by a wide variety of applications. These include functions for streaming common file formats such as SAM and VCF, string functions specific to bioinformatics, etc.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (534 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/biolibc-0.2.6.4/catalog.mk
  3. /usr/local/share/licenses/biolibc-0.2.6.4/LICENSE
  4. /usr/local/share/licenses/biolibc-0.2.6.4/BSD2CLAUSE
  5. include/biolibc/align-accessors.h
  6. include/biolibc/align-mutators.h
  7. include/biolibc/align-rvs.h
  8. include/biolibc/align.h
  9. include/biolibc/bed-accessors.h
  10. include/biolibc/bed-mutators.h
  11. include/biolibc/bed-rvs.h
  12. include/biolibc/bed.h
  13. include/biolibc/biolibc.h
  14. include/biolibc/biostring.h
  15. include/biolibc/fasta-accessors.h
  16. include/biolibc/fasta-mutators.h
  17. include/biolibc/fasta-rvs.h
  18. include/biolibc/fasta.h
  19. include/biolibc/fastq-accessors.h
  20. include/biolibc/fastq-mutators.h
  21. include/biolibc/fastq-rvs.h
  22. include/biolibc/fastq.h
  23. include/biolibc/fastx-accessors.h
  24. include/biolibc/fastx-mutators.h
  25. include/biolibc/fastx-rvs.h
  26. include/biolibc/fastx.h
  27. include/biolibc/gff3-accessors.h
  28. include/biolibc/gff3-index-accessors.h
  29. include/biolibc/gff3-index-mutators.h
  30. include/biolibc/gff3-index-rvs.h
  31. include/biolibc/gff3-index.h
  32. include/biolibc/gff3-mutators.h
  33. include/biolibc/gff3-rvs.h
  34. include/biolibc/gff3.h
  35. include/biolibc/overlap-accessors.h
  36. include/biolibc/overlap-mutators.h
  37. include/biolibc/overlap-rvs.h
  38. include/biolibc/overlap.h
  39. include/biolibc/pos-list-accessors.h
  40. include/biolibc/pos-list-mutators.h
  41. include/biolibc/pos-list-rvs.h
  42. include/biolibc/pos-list.h
  43. include/biolibc/sam-accessors.h
  44. include/biolibc/sam-buff-accessors.h
  45. include/biolibc/sam-buff-mutators.h
  46. include/biolibc/sam-buff-rvs.h
  47. include/biolibc/sam-buff.h
  48. include/biolibc/sam-mutators.h
  49. include/biolibc/sam-rvs.h
  50. include/biolibc/sam.h
  51. include/biolibc/translate.h
  52. include/biolibc/vcf-accessors.h
  53. include/biolibc/vcf-mutators.h
  54. include/biolibc/vcf-rvs.h
  55. include/biolibc/vcf.h
  56. lib/libbiolibc.a
  57. lib/libbiolibc.so
  58. lib/libbiolibc.so.2
  59. lib/libbiolibc.so.2.0
  60. share/man/man3/BL_ALIGN_MAX_MISMATCH_PERCENT.3.gz
  61. share/man/man3/BL_ALIGN_MIN_MATCH.3.gz
  62. share/man/man3/BL_BED_BLOCK_COUNT.3.gz
  63. share/man/man3/BL_BED_BLOCK_SIZES.3.gz
  64. share/man/man3/BL_BED_BLOCK_SIZES_AE.3.gz
  65. share/man/man3/BL_BED_BLOCK_STARTS.3.gz
  66. share/man/man3/BL_BED_BLOCK_STARTS_AE.3.gz
  67. share/man/man3/BL_BED_CHROM.3.gz
  68. share/man/man3/BL_BED_CHROM_AE.3.gz
  69. share/man/man3/BL_BED_CHROM_END.3.gz
  70. share/man/man3/BL_BED_CHROM_START.3.gz
  71. share/man/man3/BL_BED_FIELDS.3.gz
  72. share/man/man3/BL_BED_ITEM_RGB.3.gz
  73. share/man/man3/BL_BED_ITEM_RGB_AE.3.gz
  74. share/man/man3/BL_BED_NAME.3.gz
  75. share/man/man3/BL_BED_NAME_AE.3.gz
  76. share/man/man3/BL_BED_SCORE.3.gz
  77. share/man/man3/BL_BED_STRAND.3.gz
  78. share/man/man3/BL_BED_THICK_END.3.gz
  79. share/man/man3/BL_BED_THICK_START.3.gz
  80. share/man/man3/BL_FASTA_DESC.3.gz
  81. share/man/man3/BL_FASTA_DESC_AE.3.gz
  82. share/man/man3/BL_FASTA_DESC_ARRAY_SIZE.3.gz
  83. share/man/man3/BL_FASTA_DESC_LEN.3.gz
  84. share/man/man3/BL_FASTA_SEQ.3.gz
  85. share/man/man3/BL_FASTA_SEQ_AE.3.gz
  86. share/man/man3/BL_FASTA_SEQ_ARRAY_SIZE.3.gz
  87. share/man/man3/BL_FASTA_SEQ_LEN.3.gz
  88. share/man/man3/BL_FASTQ_DESC.3.gz
  89. share/man/man3/BL_FASTQ_DESC_AE.3.gz
  90. share/man/man3/BL_FASTQ_DESC_ARRAY_SIZE.3.gz
  91. share/man/man3/BL_FASTQ_DESC_LEN.3.gz
  92. share/man/man3/BL_FASTQ_PLUS.3.gz
  93. share/man/man3/BL_FASTQ_PLUS_AE.3.gz
  94. share/man/man3/BL_FASTQ_PLUS_ARRAY_SIZE.3.gz
  95. share/man/man3/BL_FASTQ_PLUS_LEN.3.gz
  96. share/man/man3/BL_FASTQ_QUAL.3.gz
  97. share/man/man3/BL_FASTQ_QUAL_AE.3.gz
  98. share/man/man3/BL_FASTQ_QUAL_ARRAY_SIZE.3.gz
  99. share/man/man3/BL_FASTQ_QUAL_LEN.3.gz
  100. share/man/man3/BL_FASTQ_SEQ.3.gz
  101. share/man/man3/BL_FASTQ_SEQ_AE.3.gz
  102. share/man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3.gz
  103. share/man/man3/BL_FASTQ_SEQ_LEN.3.gz
  104. share/man/man3/BL_FASTX_FASTA.3.gz
  105. share/man/man3/BL_FASTX_FASTQ.3.gz
  106. share/man/man3/BL_FASTX_FORMAT.3.gz
  107. share/man/man3/BL_FASTX_UNION.3.gz
  108. share/man/man3/BL_FASTX_}.3.gz
  109. share/man/man3/BL_GFF_ATTRIBUTES.3.gz
  110. share/man/man3/BL_GFF_ATTRIBUTES_AE.3.gz
  111. share/man/man3/BL_GFF_ATTRIBUTES_ARRAY_SIZE.3.gz
  112. share/man/man3/BL_GFF_ATTRIBUTES_LEN.3.gz
  113. share/man/man3/BL_GFF_END.3.gz
  114. share/man/man3/BL_GFF_FEATURE_ID.3.gz
  115. share/man/man3/BL_GFF_FEATURE_ID_AE.3.gz
  116. share/man/man3/BL_GFF_FEATURE_NAME.3.gz
  117. share/man/man3/BL_GFF_FEATURE_NAME_AE.3.gz
  118. share/man/man3/BL_GFF_FEATURE_PARENT.3.gz
  119. share/man/man3/BL_GFF_FEATURE_PARENT_AE.3.gz
  120. share/man/man3/BL_GFF_FILE_POS.3.gz
  121. share/man/man3/BL_GFF_INDEX_ARRAY_SIZE.3.gz
  122. share/man/man3/BL_GFF_INDEX_COUNT.3.gz
  123. share/man/man3/BL_GFF_INDEX_END.3.gz
  124. share/man/man3/BL_GFF_INDEX_END_AE.3.gz
  125. share/man/man3/BL_GFF_INDEX_FILE_POS.3.gz
  126. share/man/man3/BL_GFF_INDEX_FILE_POS_AE.3.gz
  127. share/man/man3/BL_GFF_INDEX_SEQID.3.gz
  128. share/man/man3/BL_GFF_INDEX_SEQID_AE.3.gz
  129. share/man/man3/BL_GFF_INDEX_START.3.gz
  130. share/man/man3/BL_GFF_INDEX_START_AE.3.gz
  131. share/man/man3/BL_GFF_PHASE.3.gz
  132. share/man/man3/BL_GFF_SCORE.3.gz
  133. share/man/man3/BL_GFF_SEQID.3.gz
  134. share/man/man3/BL_GFF_SEQID_AE.3.gz
  135. share/man/man3/BL_GFF_SOURCE.3.gz
  136. share/man/man3/BL_GFF_SOURCE_AE.3.gz
  137. share/man/man3/BL_GFF_START.3.gz
  138. share/man/man3/BL_GFF_STRAND.3.gz
  139. share/man/man3/BL_GFF_TYPE.3.gz
  140. share/man/man3/BL_GFF_TYPE_AE.3.gz
  141. share/man/man3/BL_OVERLAP_FEATURE1_LEN.3.gz
  142. share/man/man3/BL_OVERLAP_FEATURE2_LEN.3.gz
  143. share/man/man3/BL_OVERLAP_OVERLAP_END.3.gz
  144. share/man/man3/BL_OVERLAP_OVERLAP_LEN.3.gz
  145. share/man/man3/BL_OVERLAP_OVERLAP_START.3.gz
  146. share/man/man3/BL_POS_LIST_ARRAY_SIZE.3.gz
  147. share/man/man3/BL_POS_LIST_COUNT.3.gz
  148. share/man/man3/BL_POS_LIST_POSITIONS.3.gz
  149. share/man/man3/BL_POS_LIST_POSITIONS_AE.3.gz
  150. share/man/man3/BL_SAM_BUFF_ALIGNMENTS.3.gz
  151. share/man/man3/BL_SAM_BUFF_ALIGNMENTS_AE.3.gz
  152. share/man/man3/BL_SAM_BUFF_BUFFERED_COUNT.3.gz
  153. share/man/man3/BL_SAM_BUFF_BUFF_SIZE.3.gz
  154. share/man/man3/BL_SAM_BUFF_DISCARDED_ALIGNMENTS.3.gz
  155. share/man/man3/BL_SAM_BUFF_DISCARDED_SCORE_SUM.3.gz
  156. share/man/man3/BL_SAM_BUFF_DISCARDED_TRAILING.3.gz
  157. share/man/man3/BL_SAM_BUFF_INC_DISCARDED_TRAILING.3.gz
  158. share/man/man3/BL_SAM_BUFF_INC_TOTAL_ALIGNMENTS.3.gz
  159. share/man/man3/BL_SAM_BUFF_INC_TRAILING_ALIGNMENTS.3.gz
  160. share/man/man3/BL_SAM_BUFF_MAPQ_HIGH.3.gz
  161. share/man/man3/BL_SAM_BUFF_MAPQ_LOW.3.gz
  162. share/man/man3/BL_SAM_BUFF_MAPQ_MIN.3.gz
  163. share/man/man3/BL_SAM_BUFF_MAPQ_SUM.3.gz
  164. share/man/man3/BL_SAM_BUFF_MAX_ALIGNMENTS.3.gz
  165. share/man/man3/BL_SAM_BUFF_MAX_COUNT.3.gz
  166. share/man/man3/BL_SAM_BUFF_MAX_DISCARDED_SCORE.3.gz
  167. share/man/man3/BL_SAM_BUFF_MIN_DISCARDED_SCORE.3.gz
  168. share/man/man3/BL_SAM_BUFF_PREVIOUS_POS.3.gz
  169. share/man/man3/BL_SAM_BUFF_PREVIOUS_RNAME.3.gz
  170. share/man/man3/BL_SAM_BUFF_PREVIOUS_RNAME_AE.3.gz
  171. share/man/man3/BL_SAM_BUFF_READS_USED.3.gz
  172. share/man/man3/BL_SAM_BUFF_TOTAL_ALIGNMENTS.3.gz
  173. share/man/man3/BL_SAM_BUFF_TRAILING_ALIGNMENTS.3.gz
  174. share/man/man3/BL_SAM_BUFF_UNMAPPED_ALIGNMENTS.3.gz
  175. share/man/man3/BL_SAM_CIGAR.3.gz
  176. share/man/man3/BL_SAM_CIGAR_AE.3.gz
  177. share/man/man3/BL_SAM_CIGAR_ARRAY_SIZE.3.gz
  178. share/man/man3/BL_SAM_CIGAR_LEN.3.gz
  179. share/man/man3/BL_SAM_FLAG.3.gz
  180. share/man/man3/BL_SAM_MAPQ.3.gz
  181. share/man/man3/BL_SAM_PNEXT.3.gz
  182. share/man/man3/BL_SAM_POS.3.gz
  183. share/man/man3/BL_SAM_QNAME.3.gz
  184. share/man/man3/BL_SAM_QNAME_AE.3.gz
  185. share/man/man3/BL_SAM_QUAL.3.gz
  186. share/man/man3/BL_SAM_QUAL_AE.3.gz
  187. share/man/man3/BL_SAM_QUAL_ARRAY_SIZE.3.gz
  188. share/man/man3/BL_SAM_QUAL_LEN.3.gz
  189. share/man/man3/BL_SAM_RNAME.3.gz
  190. share/man/man3/BL_SAM_RNAME_AE.3.gz
  191. share/man/man3/BL_SAM_RNEXT.3.gz
  192. share/man/man3/BL_SAM_RNEXT_AE.3.gz
  193. share/man/man3/BL_SAM_SEQ.3.gz
  194. share/man/man3/BL_SAM_SEQ_AE.3.gz
  195. share/man/man3/BL_SAM_SEQ_ARRAY_SIZE.3.gz
  196. share/man/man3/BL_SAM_SEQ_LEN.3.gz
  197. share/man/man3/BL_SAM_TLEN.3.gz
  198. share/man/man3/BL_VCF_ALT.3.gz
  199. share/man/man3/BL_VCF_ALT_AE.3.gz
  200. share/man/man3/BL_VCF_ALT_COUNT.3.gz
  201. share/man/man3/BL_VCF_CHROM.3.gz
  202. share/man/man3/BL_VCF_CHROM_AE.3.gz
  203. share/man/man3/BL_VCF_FILTER.3.gz
  204. share/man/man3/BL_VCF_FILTER_AE.3.gz
  205. share/man/man3/BL_VCF_FORMAT.3.gz
  206. share/man/man3/BL_VCF_FORMAT_AE.3.gz
  207. share/man/man3/BL_VCF_FORMAT_ARRAY_SIZE.3.gz
  208. share/man/man3/BL_VCF_FORMAT_LEN.3.gz
  209. share/man/man3/BL_VCF_ID.3.gz
  210. share/man/man3/BL_VCF_ID_AE.3.gz
  211. share/man/man3/BL_VCF_INFO.3.gz
  212. share/man/man3/BL_VCF_INFO_AE.3.gz
  213. share/man/man3/BL_VCF_INFO_ARRAY_SIZE.3.gz
  214. share/man/man3/BL_VCF_INFO_LEN.3.gz
  215. share/man/man3/BL_VCF_MULTI_SAMPLES.3.gz
  216. share/man/man3/BL_VCF_MULTI_SAMPLES_AE.3.gz
  217. share/man/man3/BL_VCF_MULTI_SAMPLE_ARRAY_SIZES.3.gz
  218. share/man/man3/BL_VCF_MULTI_SAMPLE_ARRAY_SIZES_AE.3.gz
  219. share/man/man3/BL_VCF_MULTI_SAMPLE_COUNT.3.gz
  220. share/man/man3/BL_VCF_MULTI_SAMPLE_LENS.3.gz
  221. share/man/man3/BL_VCF_MULTI_SAMPLE_LENS_AE.3.gz
  222. share/man/man3/BL_VCF_MULTI_SAMPLE_POINTER_ARRAY_SIZE.3.gz
  223. share/man/man3/BL_VCF_OTHER_COUNT.3.gz
  224. share/man/man3/BL_VCF_PHREDS.3.gz
  225. share/man/man3/BL_VCF_PHREDS_AE.3.gz
  226. share/man/man3/BL_VCF_PHRED_BUFF_SIZE.3.gz
  227. share/man/man3/BL_VCF_PHRED_COUNT.3.gz
  228. share/man/man3/BL_VCF_POS.3.gz
  229. share/man/man3/BL_VCF_QUAL.3.gz
  230. share/man/man3/BL_VCF_QUAL_AE.3.gz
  231. share/man/man3/BL_VCF_REF.3.gz
  232. share/man/man3/BL_VCF_REF_AE.3.gz
  233. share/man/man3/BL_VCF_REF_COUNT.3.gz
  234. share/man/man3/BL_VCF_SAMPLE_ARRAY_SIZE.3.gz
  235. share/man/man3/BL_VCF_SAMPLE_LEN.3.gz
  236. share/man/man3/BL_VCF_SAMPLE_MAX.3.gz
  237. share/man/man3/BL_VCF_SINGLE_SAMPLE.3.gz
  238. share/man/man3/BL_VCF_SINGLE_SAMPLE_AE.3.gz
  239. share/man/man3/BL_VCF_SINGLE_SAMPLE_ARRAY_SIZE.3.gz
  240. share/man/man3/BL_VCF_SINGLE_SAMPLE_LEN.3.gz
  241. share/man/man3/biolibc.3.gz
  242. share/man/man3/bl_align_map_seq_exact.3.gz
  243. share/man/man3/bl_align_map_seq_sub.3.gz
  244. share/man/man3/bl_align_set_max_mismatch_percent.3.gz
  245. share/man/man3/bl_align_set_min_match.3.gz
  246. share/man/man3/bl_bed_check_order.3.gz
  247. share/man/man3/bl_bed_gff3_cmp.3.gz
  248. share/man/man3/bl_bed_gff_cmp.3.gz
  249. share/man/man3/bl_bed_read.3.gz
  250. share/man/man3/bl_bed_set_block_count.3.gz
  251. share/man/man3/bl_bed_set_block_sizes.3.gz
  252. share/man/man3/bl_bed_set_block_sizes_ae.3.gz
  253. share/man/man3/bl_bed_set_block_sizes_cpy.3.gz
  254. share/man/man3/bl_bed_set_block_starts.3.gz
  255. share/man/man3/bl_bed_set_block_starts_ae.3.gz
  256. share/man/man3/bl_bed_set_block_starts_cpy.3.gz
  257. share/man/man3/bl_bed_set_chrom_ae.3.gz
  258. share/man/man3/bl_bed_set_chrom_cpy.3.gz
  259. share/man/man3/bl_bed_set_chrom_end.3.gz
  260. share/man/man3/bl_bed_set_chrom_start.3.gz
  261. share/man/man3/bl_bed_set_fields.3.gz
  262. share/man/man3/bl_bed_set_item_rgb_ae.3.gz
  263. share/man/man3/bl_bed_set_item_rgb_cpy.3.gz
  264. share/man/man3/bl_bed_set_name_ae.3.gz
  265. share/man/man3/bl_bed_set_name_cpy.3.gz
  266. share/man/man3/bl_bed_set_score.3.gz
  267. share/man/man3/bl_bed_set_strand.3.gz
  268. share/man/man3/bl_bed_set_thick_end.3.gz
  269. share/man/man3/bl_bed_set_thick_start.3.gz
  270. share/man/man3/bl_bed_skip_header.3.gz
  271. share/man/man3/bl_bed_write.3.gz
  272. share/man/man3/bl_chrom_name_cmp.3.gz
  273. share/man/man3/bl_fasta_free.3.gz
  274. share/man/man3/bl_fasta_init.3.gz
  275. share/man/man3/bl_fasta_read.3.gz
  276. share/man/man3/bl_fasta_set_desc.3.gz
  277. share/man/man3/bl_fasta_set_desc_ae.3.gz
  278. share/man/man3/bl_fasta_set_desc_array_size.3.gz
  279. share/man/man3/bl_fasta_set_desc_cpy.3.gz
  280. share/man/man3/bl_fasta_set_desc_len.3.gz
  281. share/man/man3/bl_fasta_set_seq.3.gz
  282. share/man/man3/bl_fasta_set_seq_ae.3.gz
  283. share/man/man3/bl_fasta_set_seq_array_size.3.gz
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  286. share/man/man3/bl_fasta_write.3.gz
  287. share/man/man3/bl_fastq_3p_trim.3.gz
  288. share/man/man3/bl_fastq_find_3p_low_qual.3.gz
  289. share/man/man3/bl_fastq_free.3.gz
  290. share/man/man3/bl_fastq_init.3.gz
  291. share/man/man3/bl_fastq_name_cmp.3.gz
  292. share/man/man3/bl_fastq_read.3.gz
  293. share/man/man3/bl_fastq_set_desc.3.gz
  294. share/man/man3/bl_fastq_set_desc_ae.3.gz
  295. share/man/man3/bl_fastq_set_desc_array_size.3.gz
  296. share/man/man3/bl_fastq_set_desc_cpy.3.gz
  297. share/man/man3/bl_fastq_set_desc_len.3.gz
  298. share/man/man3/bl_fastq_set_plus.3.gz
  299. share/man/man3/bl_fastq_set_plus_ae.3.gz
  300. share/man/man3/bl_fastq_set_plus_array_size.3.gz
  301. share/man/man3/bl_fastq_set_plus_cpy.3.gz
  302. share/man/man3/bl_fastq_set_plus_len.3.gz
  303. share/man/man3/bl_fastq_set_qual.3.gz
  304. share/man/man3/bl_fastq_set_qual_ae.3.gz
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  307. share/man/man3/bl_fastq_set_qual_len.3.gz
  308. share/man/man3/bl_fastq_set_seq.3.gz
  309. share/man/man3/bl_fastq_set_seq_ae.3.gz
  310. share/man/man3/bl_fastq_set_seq_array_size.3.gz
  311. share/man/man3/bl_fastq_set_seq_cpy.3.gz
  312. share/man/man3/bl_fastq_set_seq_len.3.gz
  313. share/man/man3/bl_fastq_write.3.gz
  314. share/man/man3/bl_fastx_desc.3.gz
  315. share/man/man3/bl_fastx_desc_len.3.gz
  316. share/man/man3/bl_fastx_free.3.gz
  317. share/man/man3/bl_fastx_init.3.gz
  318. share/man/man3/bl_fastx_plus.3.gz
  319. share/man/man3/bl_fastx_plus_len.3.gz
  320. share/man/man3/bl_fastx_qual.3.gz
  321. share/man/man3/bl_fastx_qual_len.3.gz
  322. share/man/man3/bl_fastx_read.3.gz
  323. share/man/man3/bl_fastx_seq.3.gz
  324. share/man/man3/bl_fastx_seq_len.3.gz
  325. share/man/man3/bl_fastx_set_fasta.3.gz
  326. share/man/man3/bl_fastx_set_fastq.3.gz
  327. share/man/man3/bl_fastx_set_format.3.gz
  328. share/man/man3/bl_fastx_write.3.gz
  329. share/man/man3/bl_gff3_copy.3.gz
  330. share/man/man3/bl_gff3_copy_header.3.gz
  331. share/man/man3/bl_gff3_dup.3.gz
  332. share/man/man3/bl_gff3_extract_attribute.3.gz
  333. share/man/man3/bl_gff3_free.3.gz
  334. share/man/man3/bl_gff3_index_add.3.gz
  335. share/man/man3/bl_gff3_index_seek_reverse.3.gz
  336. share/man/man3/bl_gff3_index_set_array_size.3.gz
  337. share/man/man3/bl_gff3_index_set_count.3.gz
  338. share/man/man3/bl_gff3_index_set_end.3.gz
  339. share/man/man3/bl_gff3_index_set_end_ae.3.gz
  340. share/man/man3/bl_gff3_index_set_end_cpy.3.gz
  341. share/man/man3/bl_gff3_index_set_file_pos.3.gz
  342. share/man/man3/bl_gff3_index_set_file_pos_ae.3.gz
  343. share/man/man3/bl_gff3_index_set_file_pos_cpy.3.gz
  344. share/man/man3/bl_gff3_index_set_seqid.3.gz
  345. share/man/man3/bl_gff3_index_set_seqid_ae.3.gz
  346. share/man/man3/bl_gff3_index_set_seqid_cpy.3.gz
  347. share/man/man3/bl_gff3_index_set_start.3.gz
  348. share/man/man3/bl_gff3_index_set_start_ae.3.gz
  349. share/man/man3/bl_gff3_index_set_start_cpy.3.gz
  350. share/man/man3/bl_gff3_init.3.gz
  351. share/man/man3/bl_gff3_read.3.gz
  352. share/man/man3/bl_gff3_sam_cmp.3.gz
  353. share/man/man3/bl_gff3_sam_overlap.3.gz
  354. share/man/man3/bl_gff3_set_attributes.3.gz
  355. share/man/man3/bl_gff3_set_attributes_ae.3.gz
  356. share/man/man3/bl_gff3_set_attributes_array_size.3.gz
  357. share/man/man3/bl_gff3_set_attributes_cpy.3.gz
  358. share/man/man3/bl_gff3_set_attributes_len.3.gz
  359. share/man/man3/bl_gff3_set_end.3.gz
  360. share/man/man3/bl_gff3_set_feature_id.3.gz
  361. share/man/man3/bl_gff3_set_feature_id_ae.3.gz
  362. share/man/man3/bl_gff3_set_feature_id_cpy.3.gz
  363. share/man/man3/bl_gff3_set_feature_name.3.gz
  364. share/man/man3/bl_gff3_set_feature_name_ae.3.gz
  365. share/man/man3/bl_gff3_set_feature_name_cpy.3.gz
  366. share/man/man3/bl_gff3_set_feature_parent.3.gz
  367. share/man/man3/bl_gff3_set_feature_parent_ae.3.gz
  368. share/man/man3/bl_gff3_set_feature_parent_cpy.3.gz
  369. share/man/man3/bl_gff3_set_file_pos.3.gz
  370. share/man/man3/bl_gff3_set_gene_name_cpy.3.gz
  371. share/man/man3/bl_gff3_set_phase.3.gz
  372. share/man/man3/bl_gff3_set_score.3.gz
  373. share/man/man3/bl_gff3_set_seqid_ae.3.gz
  374. share/man/man3/bl_gff3_set_seqid_cpy.3.gz
  375. share/man/man3/bl_gff3_set_source_ae.3.gz
  376. share/man/man3/bl_gff3_set_source_cpy.3.gz
  377. share/man/man3/bl_gff3_set_start.3.gz
  378. share/man/man3/bl_gff3_set_strand.3.gz
  379. share/man/man3/bl_gff3_set_type_ae.3.gz
  380. share/man/man3/bl_gff3_set_type_cpy.3.gz
  381. share/man/man3/bl_gff3_skip_header.3.gz
  382. share/man/man3/bl_gff3_to_bed.3.gz
  383. share/man/man3/bl_gff3_write.3.gz
  384. share/man/man3/bl_next_start_codon.3.gz
  385. share/man/man3/bl_next_stop_codon.3.gz
  386. share/man/man3/bl_overlap_print.3.gz
  387. share/man/man3/bl_overlap_set_all.3.gz
  388. share/man/man3/bl_overlap_set_feature1_len.3.gz
  389. share/man/man3/bl_overlap_set_feature2_len.3.gz
  390. share/man/man3/bl_overlap_set_overlap_end.3.gz
  391. share/man/man3/bl_overlap_set_overlap_len.3.gz
  392. share/man/man3/bl_overlap_set_overlap_start.3.gz
  393. share/man/man3/bl_pos_list_add_position.3.gz
  394. share/man/man3/bl_pos_list_allocate.3.gz
  395. share/man/man3/bl_pos_list_free.3.gz
  396. share/man/man3/bl_pos_list_from_csv.3.gz
  397. share/man/man3/bl_pos_list_set_array_size.3.gz
  398. share/man/man3/bl_pos_list_set_count.3.gz
  399. share/man/man3/bl_pos_list_set_positions.3.gz
  400. share/man/man3/bl_pos_list_set_positions_ae.3.gz
  401. share/man/man3/bl_pos_list_set_positions_cpy.3.gz
  402. share/man/man3/bl_pos_list_sort.3.gz
  403. share/man/man3/bl_sam_buff_add_alignment.3.gz
  404. share/man/man3/bl_sam_buff_alignment_ok.3.gz
  405. share/man/man3/bl_sam_buff_check_order.3.gz
  406. share/man/man3/bl_sam_buff_free_alignment.3.gz
  407. share/man/man3/bl_sam_buff_init.3.gz
  408. share/man/man3/bl_sam_buff_out_of_order.3.gz
  409. share/man/man3/bl_sam_buff_set_alignments.3.gz
  410. share/man/man3/bl_sam_buff_set_alignments_ae.3.gz
  411. share/man/man3/bl_sam_buff_set_alignments_cpy.3.gz
  412. share/man/man3/bl_sam_buff_set_buff_size.3.gz
  413. share/man/man3/bl_sam_buff_set_buffered_count.3.gz
  414. share/man/man3/bl_sam_buff_set_discarded_alignments.3.gz
  415. share/man/man3/bl_sam_buff_set_discarded_score_sum.3.gz
  416. share/man/man3/bl_sam_buff_set_discarded_trailing.3.gz
  417. share/man/man3/bl_sam_buff_set_mapq_high.3.gz
  418. share/man/man3/bl_sam_buff_set_mapq_low.3.gz
  419. share/man/man3/bl_sam_buff_set_mapq_min.3.gz
  420. share/man/man3/bl_sam_buff_set_mapq_sum.3.gz
  421. share/man/man3/bl_sam_buff_set_max_alignments.3.gz
  422. share/man/man3/bl_sam_buff_set_max_count.3.gz
  423. share/man/man3/bl_sam_buff_set_max_discarded_score.3.gz
  424. share/man/man3/bl_sam_buff_set_min_discarded_score.3.gz
  425. share/man/man3/bl_sam_buff_set_previous_pos.3.gz
  426. share/man/man3/bl_sam_buff_set_previous_rname_ae.3.gz
  427. share/man/man3/bl_sam_buff_set_previous_rname_cpy.3.gz
  428. share/man/man3/bl_sam_buff_set_reads_used.3.gz
  429. share/man/man3/bl_sam_buff_set_total_alignments.3.gz
  430. share/man/man3/bl_sam_buff_set_trailing_alignments.3.gz
  431. share/man/man3/bl_sam_buff_set_unmapped_alignments.3.gz
  432. share/man/man3/bl_sam_buff_shift.3.gz
  433. share/man/man3/bl_sam_copy.3.gz
  434. share/man/man3/bl_sam_copy_header.3.gz
  435. share/man/man3/bl_sam_fclose.3.gz
  436. share/man/man3/bl_sam_fopen.3.gz
  437. share/man/man3/bl_sam_free.3.gz
  438. share/man/man3/bl_sam_gff3_cmp.3.gz
  439. share/man/man3/bl_sam_gff3_overlap.3.gz
  440. share/man/man3/bl_sam_gff_cmp.3.gz
  441. share/man/man3/bl_sam_gff_overlap.3.gz
  442. share/man/man3/bl_sam_init.3.gz
  443. share/man/man3/bl_sam_read.3.gz
  444. share/man/man3/bl_sam_set_cigar.3.gz
  445. share/man/man3/bl_sam_set_cigar_ae.3.gz
  446. share/man/man3/bl_sam_set_cigar_array_size.3.gz
  447. share/man/man3/bl_sam_set_cigar_cpy.3.gz
  448. share/man/man3/bl_sam_set_cigar_len.3.gz
  449. share/man/man3/bl_sam_set_flag.3.gz
  450. share/man/man3/bl_sam_set_mapq.3.gz
  451. share/man/man3/bl_sam_set_pnext.3.gz
  452. share/man/man3/bl_sam_set_pos.3.gz
  453. share/man/man3/bl_sam_set_qname_ae.3.gz
  454. share/man/man3/bl_sam_set_qname_cpy.3.gz
  455. share/man/man3/bl_sam_set_qual.3.gz
  456. share/man/man3/bl_sam_set_qual_ae.3.gz
  457. share/man/man3/bl_sam_set_qual_array_size.3.gz
  458. share/man/man3/bl_sam_set_qual_cpy.3.gz
  459. share/man/man3/bl_sam_set_qual_len.3.gz
  460. share/man/man3/bl_sam_set_rname_ae.3.gz
  461. share/man/man3/bl_sam_set_rname_cpy.3.gz
  462. share/man/man3/bl_sam_set_rnext_ae.3.gz
  463. share/man/man3/bl_sam_set_rnext_cpy.3.gz
  464. share/man/man3/bl_sam_set_seq.3.gz
  465. share/man/man3/bl_sam_set_seq_ae.3.gz
  466. share/man/man3/bl_sam_set_seq_array_size.3.gz
  467. share/man/man3/bl_sam_set_seq_cpy.3.gz
  468. share/man/man3/bl_sam_set_seq_len.3.gz
  469. share/man/man3/bl_sam_set_tlen.3.gz
  470. share/man/man3/bl_sam_skip_header.3.gz
  471. share/man/man3/bl_sam_write.3.gz
  472. share/man/man3/bl_vcf_call_downstream_of_alignment.3.gz
  473. share/man/man3/bl_vcf_call_in_alignment.3.gz
  474. share/man/man3/bl_vcf_call_out_of_order.3.gz
  475. share/man/man3/bl_vcf_free.3.gz
  476. share/man/man3/bl_vcf_get_sample_ids.3.gz
  477. share/man/man3/bl_vcf_init.3.gz
  478. share/man/man3/bl_vcf_parse_field_spec.3.gz
  479. share/man/man3/bl_vcf_read_ss_call.3.gz
  480. share/man/man3/bl_vcf_read_static_fields.3.gz
  481. share/man/man3/bl_vcf_set_alt_ae.3.gz
  482. share/man/man3/bl_vcf_set_alt_count.3.gz
  483. share/man/man3/bl_vcf_set_alt_cpy.3.gz
  484. share/man/man3/bl_vcf_set_chrom_ae.3.gz
  485. share/man/man3/bl_vcf_set_chrom_cpy.3.gz
  486. share/man/man3/bl_vcf_set_filter_ae.3.gz
  487. share/man/man3/bl_vcf_set_filter_cpy.3.gz
  488. share/man/man3/bl_vcf_set_format.3.gz
  489. share/man/man3/bl_vcf_set_format_ae.3.gz
  490. share/man/man3/bl_vcf_set_format_array_size.3.gz
  491. share/man/man3/bl_vcf_set_format_cpy.3.gz
  492. share/man/man3/bl_vcf_set_format_len.3.gz
  493. share/man/man3/bl_vcf_set_id_ae.3.gz
  494. share/man/man3/bl_vcf_set_id_cpy.3.gz
  495. share/man/man3/bl_vcf_set_info.3.gz
  496. share/man/man3/bl_vcf_set_info_ae.3.gz
  497. share/man/man3/bl_vcf_set_info_array_size.3.gz
  498. share/man/man3/bl_vcf_set_info_cpy.3.gz
  499. share/man/man3/bl_vcf_set_info_len.3.gz
  500. share/man/man3/bl_vcf_set_multi_sample_array_sizes.3.gz
  501. share/man/man3/bl_vcf_set_multi_sample_array_sizes_ae.3.gz
  502. share/man/man3/bl_vcf_set_multi_sample_array_sizes_cpy.3.gz
  503. share/man/man3/bl_vcf_set_multi_sample_count.3.gz
  504. share/man/man3/bl_vcf_set_multi_sample_lens.3.gz
  505. share/man/man3/bl_vcf_set_multi_sample_lens_ae.3.gz
  506. share/man/man3/bl_vcf_set_multi_sample_lens_cpy.3.gz
  507. share/man/man3/bl_vcf_set_multi_sample_pointer_array_size.3.gz
  508. share/man/man3/bl_vcf_set_multi_samples.3.gz
  509. share/man/man3/bl_vcf_set_multi_samples_ae.3.gz
  510. share/man/man3/bl_vcf_set_multi_samples_cpy.3.gz
  511. share/man/man3/bl_vcf_set_other_count.3.gz
  512. share/man/man3/bl_vcf_set_phred_buff_size.3.gz
  513. share/man/man3/bl_vcf_set_phred_count.3.gz
  514. share/man/man3/bl_vcf_set_phreds.3.gz
  515. share/man/man3/bl_vcf_set_phreds_ae.3.gz
  516. share/man/man3/bl_vcf_set_phreds_cpy.3.gz
  517. share/man/man3/bl_vcf_set_pos.3.gz
  518. share/man/man3/bl_vcf_set_qual_ae.3.gz
  519. share/man/man3/bl_vcf_set_qual_cpy.3.gz
  520. share/man/man3/bl_vcf_set_ref_ae.3.gz
  521. share/man/man3/bl_vcf_set_ref_count.3.gz
  522. share/man/man3/bl_vcf_set_ref_cpy.3.gz
  523. share/man/man3/bl_vcf_set_single_sample.3.gz
  524. share/man/man3/bl_vcf_set_single_sample_ae.3.gz
  525. share/man/man3/bl_vcf_set_single_sample_array_size.3.gz
  526. share/man/man3/bl_vcf_set_single_sample_cpy.3.gz
  527. share/man/man3/bl_vcf_set_single_sample_len.3.gz
  528. share/man/man3/bl_vcf_skip_header.3.gz
  529. share/man/man3/bl_vcf_skip_meta_data.3.gz
  530. share/man/man3/bl_vcf_write_ss_call.3.gz
  531. share/man/man3/bl_vcf_write_static_fields.3.gz
  532. @owner
  533. @group
  534. @mode
Collapse this list.
Dependency lines:
  • biolibc>0:biology/biolibc
To install the port:
cd /usr/ports/biology/biolibc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biolibc
  • pkg install biolibc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: biolibc
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1716122167 SHA256 (auerlab-biolibc-0.2.6-4-g723ac84_GH0.tar.gz) = d467c954b3d7ffaafe1dea36006113bf7b412285fdc07e71c504fd5b5db5ae64 SIZE (auerlab-biolibc-0.2.6-4-g723ac84_GH0.tar.gz) = 147951

Packages (timestamps in pop-ups are UTC):
biolibc
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.2.6_10.2.6_1-0.2.6_10.2.6.4---
FreeBSD:13:quarterly0.2.6_10.2.6_10.2.4.30.2.6_10.2.6_10.2.60.2.60.2.6
FreeBSD:14:latest0.2.6_10.2.6_10.2.40.2.6_10.2.6_10.2.4.3-0.2.4.3
FreeBSD:14:quarterly0.2.6_10.2.6_1-0.2.6_10.2.6_10.2.60.2.60.2.6
FreeBSD:15:latest0.2.6_10.2.6_1n/a0.2.6_1n/a0.2.6_10.2.6_10.2.6_1
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Library dependencies:
  1. libxtend.so : devel/libxtend
This port is required by:
for Libraries
  1. biology/ad2vcf
  2. biology/biolibc-tools
  3. biology/fasda
  4. biology/fastq-trim
  5. biology/peak-classifier
  6. biology/vcf-split
  7. biology/vcf2hap

Configuration Options:
No options to configure
Options name:
biology_biolibc
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/auerlab/biolibc/tar.gz/0.2.6-4-g723ac84?dummy=/
Collapse this list.

Number of commits found: 19

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.2.6.4
19 May 2024 13:40:24
commit hash: 93db8fd309bc65ddabd8d6f6447fe03f1992c63acommit hash: 93db8fd309bc65ddabd8d6f6447fe03f1992c63acommit hash: 93db8fd309bc65ddabd8d6f6447fe03f1992c63acommit hash: 93db8fd309bc65ddabd8d6f6447fe03f1992c63a files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.6.4

bl_sam_copy(): Make sure all fields are properly initialized
0.2.6_1
23 Jan 2024 14:51:25
commit hash: 57d1705819c717b8291562168b0f7f4948cde663commit hash: 57d1705819c717b8291562168b0f7f4948cde663commit hash: 57d1705819c717b8291562168b0f7f4948cde663commit hash: 57d1705819c717b8291562168b0f7f4948cde663 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/biolibc: Impelled to share/man

Approved by:    portmgr (blanket)
0.2.6
28 Oct 2023 11:21:35
commit hash: 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8commit hash: 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8commit hash: 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8commit hash: 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.6

Updates for libxtend 0.2.0 API
Add full list of functions to biolibc(3) man page
Other documentation improvements
Changes: https://github.com/auerlab/biolibc/releases
0.2.5
11 Aug 2023 20:35:11
commit hash: c978aad1b08481c3d43e9e3a274472b3874c4970commit hash: c978aad1b08481c3d43e9e3a274472b3874c4970commit hash: c978aad1b08481c3d43e9e3a274472b3874c4970commit hash: c978aad1b08481c3d43e9e3a274472b3874c4970 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.5

Make header files C++ compatible (extern C)
bl_chrom_name_cmp(): Support names with embedded digits, e.g. chr2p
bl_gff_extract_attribute(): Improve performance
gff -> gff3 to distinguish from past and future GFF specs
Silence some compiler warnings

Changes: https://github.com/auerlab/biolibc/releases
0.2.4.3
10 Jun 2023 12:15:29
commit hash: 481ae0481b82662ab92ed5ff10ae810feff52efccommit hash: 481ae0481b82662ab92ed5ff10ae810feff52efccommit hash: 481ae0481b82662ab92ed5ff10ae810feff52efccommit hash: 481ae0481b82662ab92ed5ff10ae810feff52efc files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.4.3

Add extern "C" to support use from C++ apps
0.2.4
11 Dec 2022 20:06:23
commit hash: ec1ac3fb0d990cf76baf7fc5b64005273022aa3dcommit hash: ec1ac3fb0d990cf76baf7fc5b64005273022aa3dcommit hash: ec1ac3fb0d990cf76baf7fc5b64005273022aa3dcommit hash: ec1ac3fb0d990cf76baf7fc5b64005273022aa3d files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.4

Minor enhancements

Changes:    https://github.com/auerlab/biolibc/releases
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.2.3
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.2.3
11 Jun 2022 14:26:56
commit hash: 603571cd3226aa0b353aceb61aeaf275b2973c6bcommit hash: 603571cd3226aa0b353aceb61aeaf275b2973c6bcommit hash: 603571cd3226aa0b353aceb61aeaf275b2973c6bcommit hash: 603571cd3226aa0b353aceb61aeaf275b2973c6b files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.3

Expand use of tsv_read_field_malloc() to improve memory efficiency
Add SAM bit flag constants
Import SAM-GFF compare functions from diffanal
Updates for libxtend DSV API changes
Numerous minor bug fixes and enhancements

Changes:        https://github.com/auerlab/biolibc/tags
0.2.2
15 Mar 2022 21:35:22
commit hash: 258dc9d15d7c697fbe6fe4056a760360d36049a2commit hash: 258dc9d15d7c697fbe6fe4056a760360d36049a2commit hash: 258dc9d15d7c697fbe6fe4056a760360d36049a2commit hash: 258dc9d15d7c697fbe6fe4056a760360d36049a2 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.2

Numerous bug fixes and enhancements
Serveral new functions
3 new classes
Cleaned up some API slop
Changes: https://github.com/auerlab/biolibc/tags
0.2.1
14 Dec 2021 19:45:31
commit hash: 0646ba904fbe551f21b50f2d7aa5b0b550c4176fcommit hash: 0646ba904fbe551f21b50f2d7aa5b0b550c4176fcommit hash: 0646ba904fbe551f21b50f2d7aa5b0b550c4176fcommit hash: 0646ba904fbe551f21b50f2d7aa5b0b550c4176f files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.1

Add orf.c with start/stop codon locators
Standardize BED and GFF APIs
Implement VCF input filtering
Eliminate mutator macros mirroring mutator functions
Numerous minor bug fixes and enhancements

Changes: https://github.com/auerlab/biolibc/releases/tag/0.2.1
0.2.0.11
17 Sep 2021 16:33:57
commit hash: 623975bcb451d12a01eea7a8a822539d963c381fcommit hash: 623975bcb451d12a01eea7a8a822539d963c381fcommit hash: 623975bcb451d12a01eea7a8a822539d963c381fcommit hash: 623975bcb451d12a01eea7a8a822539d963c381f files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0.11

Regenerate man pages with improved auto-c2man
Adds missing return value sections and improves formatting
0.2.0.1
02 Sep 2021 23:10:21
commit hash: df5931308708667fbd06a1fa8f11d763195af1bfcommit hash: df5931308708667fbd06a1fa8f11d763195af1bfcommit hash: df5931308708667fbd06a1fa8f11d763195af1bfcommit hash: df5931308708667fbd06a1fa8f11d763195af1bf files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0.1

Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
0.2.0
28 Aug 2021 01:21:02
commit hash: 9876430959ae7d730e71ada0c6319e8deede88bccommit hash: 9876430959ae7d730e71ada0c6319e8deede88bccommit hash: 9876430959ae7d730e71ada0c6319e8deede88bccommit hash: 9876430959ae7d730e71ada0c6319e8deede88bc files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.2.0

Major API overhaul
New classes for FASTA and FASTQ
Generate accessor and mutator functions for all classes
Generate man pages for all functions and macros
Export delimiter-separated-value class to libxtend
0.1.3
11 Jun 2021 15:38:27
commit hash: 45da218542662de740486dbc6a5aa79a0e6d00eacommit hash: 45da218542662de740486dbc6a5aa79a0e6d00eacommit hash: 45da218542662de740486dbc6a5aa79a0e6d00eacommit hash: 45da218542662de740486dbc6a5aa79a0e6d00ea files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Remove comment used to silence portlint
0.1.3
11 Jun 2021 15:05:18
commit hash: 495634f580bdb5bf7020c53ef98d348ad682bb86commit hash: 495634f580bdb5bf7020c53ef98d348ad682bb86commit hash: 495634f580bdb5bf7020c53ef98d348ad682bb86commit hash: 495634f580bdb5bf7020c53ef98d348ad682bb86 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/biolibc: Update to 0.1.3

Changes:        https://github.com/auerlab/biolibc/releases
0.1.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
0.1.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.1.1
21 Mar 2021 15:10:17
Revision:568921Original commit files touched by this commit
jwb search for other commits by this committer
biology/biolibc: Low-level high-performance bioinformatics library

Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.

Number of commits found: 19