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Port details
chip-seq Metaport for ChIP-Seq analysis
0.1.2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.2Version of this port present on the latest quarterly branch.
Maintainer: search for ports maintained by this maintainer
Port Added: 2023-06-14 21:24:35
Last Update: 2023-06-14 21:23:37
Commit Hash: fddb1ea
Also Listed In: python
License: NA
Metaport to install tools for typical ChIP-Seq analysis, including QC, adapter trimming, alignment, and differential analysis.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
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  1. /usr/local/share/licenses/chip-seq-0.1.2/
  2. /usr/local/share/licenses/chip-seq-0.1.2/LICENSE
  3. /usr/local/share/licenses/chip-seq-0.1.2/NA
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Dependency lines:
  • chip-seq>0:biology/chip-seq
To install the port:
cd /usr/ports/biology/chip-seq/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/chip-seq
  • pkg install chip-seq
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: chip-seq
Flavors: there is no flavor information for this port.
TIMESTAMP = 1686777697

Packages (timestamps in pop-ups are UTC):
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. sra-tools>0 : biology/sra-tools
  2. fastq-trim>0 : biology/fastq-trim
  3. fastqc>0 : biology/fastqc
  4. py39-multiqc>0 : biology/py-multiqc@py39
  5. biolibc-tools>0 : biology/biolibc-tools
  6. bwa>0 : biology/bwa
  7. bowtie2>0 : biology/bowtie2
  8. samtools>0 : biology/samtools
  9. py39-macs2>0 : biology/py-macs2@py39
  10. fasda>0 : biology/fasda
  11. peak-classifier>0 : biology/peak-classifier
  12. webbrowser>0 : www/webbrowser
  13. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
metaport python
FreshPorts was unable to extract/find any pkg message
Master Sites:
  1. There is no master site for this port.

Number of commits found: 1

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
14 Jun 2023 21:23:37
commit hash: fddb1ea643a59874932554e27ec62432a65aa136commit hash: fddb1ea643a59874932554e27ec62432a65aa136commit hash: fddb1ea643a59874932554e27ec62432a65aa136commit hash: fddb1ea643a59874932554e27ec62432a65aa136 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/chip-seq: Metaport for ChIP-Seq analysis

Metaport to install tools for typical ChIP-Seq analysis, including QC,
adapter trimming, alignment, and differential analysis.

Presently identical to biology/atac-seq, but may diverge in the future.

Number of commits found: 1