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Port details
p5-BioPerl Collection of Perl modules for bioinformatics
1.007007_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:27:08
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: ART10 GPLv1+
Description:
HomepagecgitgithubgitlabSVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (1082 items)
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  1. /usr/local/share/licenses/p5-BioPerl-1.007007_1/catalog.mk
  2. /usr/local/share/licenses/p5-BioPerl-1.007007_1/LICENSE
  3. /usr/local/share/licenses/p5-BioPerl-1.007007_1/ART10
  4. /usr/local/share/licenses/p5-BioPerl-1.007007_1/GPLv1+
  5. bin/bp_aacomp
  6. bin/bp_bioflat_index
  7. bin/bp_biogetseq
  8. bin/bp_dbsplit
  9. bin/bp_extract_feature_seq
  10. bin/bp_fastam9_to_table
  11. bin/bp_fetch
  12. bin/bp_filter_search
  13. bin/bp_find-blast-matches
  14. bin/bp_gccalc
  15. bin/bp_genbank2gff3
  16. bin/bp_index
  17. bin/bp_local_taxonomydb_query
  18. bin/bp_make_mrna_protein
  19. bin/bp_mask_by_search
  20. bin/bp_mrtrans
  21. bin/bp_mutate
  22. bin/bp_nexus2nh
  23. bin/bp_nrdb
  24. bin/bp_oligo_count
  25. bin/bp_process_gadfly
  26. bin/bp_process_sgd
  27. bin/bp_revtrans-motif
  28. bin/bp_search2alnblocks
  29. bin/bp_search2gff
  30. bin/bp_search2table
  31. bin/bp_search2tribe
  32. bin/bp_seq_length
  33. bin/bp_seqconvert
  34. bin/bp_seqcut
  35. bin/bp_seqpart
  36. bin/bp_seqret
  37. bin/bp_seqretsplit
  38. bin/bp_split_seq
  39. bin/bp_sreformat
  40. bin/bp_taxid4species
  41. bin/bp_taxonomy2tree
  42. bin/bp_translate_seq
  43. bin/bp_tree2pag
  44. bin/bp_unflatten_seq
  45. lib/perl5/site_perl/Bio/Align/AlignI.pm
  46. lib/perl5/site_perl/Bio/Align/DNAStatistics.pm
  47. lib/perl5/site_perl/Bio/Align/PairwiseStatistics.pm
  48. lib/perl5/site_perl/Bio/Align/ProteinStatistics.pm
  49. lib/perl5/site_perl/Bio/Align/StatisticsI.pm
  50. lib/perl5/site_perl/Bio/Align/Utilities.pm
  51. lib/perl5/site_perl/Bio/AlignIO.pm
  52. lib/perl5/site_perl/Bio/AlignIO/Handler/GenericAlignHandler.pm
  53. lib/perl5/site_perl/Bio/AlignIO/arp.pm
  54. lib/perl5/site_perl/Bio/AlignIO/bl2seq.pm
  55. lib/perl5/site_perl/Bio/AlignIO/clustalw.pm
  56. lib/perl5/site_perl/Bio/AlignIO/emboss.pm
  57. lib/perl5/site_perl/Bio/AlignIO/fasta.pm
  58. lib/perl5/site_perl/Bio/AlignIO/largemultifasta.pm
  59. lib/perl5/site_perl/Bio/AlignIO/maf.pm
  60. lib/perl5/site_perl/Bio/AlignIO/mase.pm
  61. lib/perl5/site_perl/Bio/AlignIO/mega.pm
  62. lib/perl5/site_perl/Bio/AlignIO/meme.pm
  63. lib/perl5/site_perl/Bio/AlignIO/metafasta.pm
  64. lib/perl5/site_perl/Bio/AlignIO/msf.pm
  65. lib/perl5/site_perl/Bio/AlignIO/nexus.pm
  66. lib/perl5/site_perl/Bio/AlignIO/pfam.pm
  67. lib/perl5/site_perl/Bio/AlignIO/phylip.pm
  68. lib/perl5/site_perl/Bio/AlignIO/po.pm
  69. lib/perl5/site_perl/Bio/AlignIO/proda.pm
  70. lib/perl5/site_perl/Bio/AlignIO/prodom.pm
  71. lib/perl5/site_perl/Bio/AlignIO/psi.pm
  72. lib/perl5/site_perl/Bio/AlignIO/selex.pm
  73. lib/perl5/site_perl/Bio/AlignIO/xmfa.pm
  74. lib/perl5/site_perl/Bio/AnalysisI.pm
  75. lib/perl5/site_perl/Bio/AnalysisParserI.pm
  76. lib/perl5/site_perl/Bio/AnalysisResultI.pm
  77. lib/perl5/site_perl/Bio/AnnotatableI.pm
  78. lib/perl5/site_perl/Bio/Annotation/AnnotationFactory.pm
  79. lib/perl5/site_perl/Bio/Annotation/Collection.pm
  80. lib/perl5/site_perl/Bio/Annotation/Comment.pm
  81. lib/perl5/site_perl/Bio/Annotation/DBLink.pm
  82. lib/perl5/site_perl/Bio/Annotation/OntologyTerm.pm
  83. lib/perl5/site_perl/Bio/Annotation/Reference.pm
  84. lib/perl5/site_perl/Bio/Annotation/Relation.pm
  85. lib/perl5/site_perl/Bio/Annotation/SimpleValue.pm
  86. lib/perl5/site_perl/Bio/Annotation/StructuredValue.pm
  87. lib/perl5/site_perl/Bio/Annotation/TagTree.pm
  88. lib/perl5/site_perl/Bio/Annotation/Target.pm
  89. lib/perl5/site_perl/Bio/Annotation/Tree.pm
  90. lib/perl5/site_perl/Bio/Annotation/TypeManager.pm
  91. lib/perl5/site_perl/Bio/AnnotationCollectionI.pm
  92. lib/perl5/site_perl/Bio/AnnotationI.pm
  93. lib/perl5/site_perl/Bio/CodonUsage/IO.pm
  94. lib/perl5/site_perl/Bio/CodonUsage/Table.pm
  95. lib/perl5/site_perl/Bio/DB/DBFetch.pm
  96. lib/perl5/site_perl/Bio/DB/Failover.pm
  97. lib/perl5/site_perl/Bio/DB/Fasta.pm
  98. lib/perl5/site_perl/Bio/DB/FileCache.pm
  99. lib/perl5/site_perl/Bio/DB/Flat.pm
  100. lib/perl5/site_perl/Bio/DB/Flat/BDB.pm
  101. lib/perl5/site_perl/Bio/DB/Flat/BDB/embl.pm
  102. lib/perl5/site_perl/Bio/DB/Flat/BDB/fasta.pm
  103. lib/perl5/site_perl/Bio/DB/Flat/BDB/genbank.pm
  104. lib/perl5/site_perl/Bio/DB/Flat/BDB/swiss.pm
  105. lib/perl5/site_perl/Bio/DB/Flat/BinarySearch.pm
  106. lib/perl5/site_perl/Bio/DB/GFF/Util/Binning.pm
  107. lib/perl5/site_perl/Bio/DB/GFF/Util/Rearrange.pm
  108. lib/perl5/site_perl/Bio/DB/GenericWebAgent.pm
  109. lib/perl5/site_perl/Bio/DB/InMemoryCache.pm
  110. lib/perl5/site_perl/Bio/DB/IndexedBase.pm
  111. lib/perl5/site_perl/Bio/DB/LocationI.pm
  112. lib/perl5/site_perl/Bio/DB/Qual.pm
  113. lib/perl5/site_perl/Bio/DB/Query/WebQuery.pm
  114. lib/perl5/site_perl/Bio/DB/QueryI.pm
  115. lib/perl5/site_perl/Bio/DB/RandomAccessI.pm
  116. lib/perl5/site_perl/Bio/DB/ReferenceI.pm
  117. lib/perl5/site_perl/Bio/DB/Registry.pm
  118. lib/perl5/site_perl/Bio/DB/SeqI.pm
  119. lib/perl5/site_perl/Bio/DB/Taxonomy.pm
  120. lib/perl5/site_perl/Bio/DB/Taxonomy/flatfile.pm
  121. lib/perl5/site_perl/Bio/DB/Taxonomy/greengenes.pm
  122. lib/perl5/site_perl/Bio/DB/Taxonomy/list.pm
  123. lib/perl5/site_perl/Bio/DB/Taxonomy/silva.pm
  124. lib/perl5/site_perl/Bio/DB/UpdateableSeqI.pm
  125. lib/perl5/site_perl/Bio/DB/WebDBSeqI.pm
  126. lib/perl5/site_perl/Bio/DBLinkContainerI.pm
  127. lib/perl5/site_perl/Bio/Das/FeatureTypeI.pm
  128. lib/perl5/site_perl/Bio/Das/SegmentI.pm
  129. lib/perl5/site_perl/Bio/DasI.pm
  130. lib/perl5/site_perl/Bio/DescribableI.pm
  131. lib/perl5/site_perl/Bio/Event/EventGeneratorI.pm
  132. lib/perl5/site_perl/Bio/Event/EventHandlerI.pm
  133. lib/perl5/site_perl/Bio/Factory/AnalysisI.pm
  134. lib/perl5/site_perl/Bio/Factory/ApplicationFactoryI.pm
  135. lib/perl5/site_perl/Bio/Factory/DriverFactory.pm
  136. lib/perl5/site_perl/Bio/Factory/FTLocationFactory.pm
  137. lib/perl5/site_perl/Bio/Factory/LocationFactoryI.pm
  138. lib/perl5/site_perl/Bio/Factory/ObjectBuilderI.pm
  139. lib/perl5/site_perl/Bio/Factory/ObjectFactory.pm
  140. lib/perl5/site_perl/Bio/Factory/ObjectFactoryI.pm
  141. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactory.pm
  142. lib/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactoryI.pm
  143. lib/perl5/site_perl/Bio/Factory/SequenceFactoryI.pm
  144. lib/perl5/site_perl/Bio/Factory/SequenceProcessorI.pm
  145. lib/perl5/site_perl/Bio/Factory/SequenceStreamI.pm
  146. lib/perl5/site_perl/Bio/Factory/TreeFactoryI.pm
  147. lib/perl5/site_perl/Bio/FeatureHolderI.pm
  148. lib/perl5/site_perl/Bio/HandlerBaseI.pm
  149. lib/perl5/site_perl/Bio/IdCollectionI.pm
  150. lib/perl5/site_perl/Bio/IdentifiableI.pm
  151. lib/perl5/site_perl/Bio/Index/Abstract.pm
  152. lib/perl5/site_perl/Bio/Index/AbstractSeq.pm
  153. lib/perl5/site_perl/Bio/Index/Blast.pm
  154. lib/perl5/site_perl/Bio/Index/BlastTable.pm
  155. lib/perl5/site_perl/Bio/Index/EMBL.pm
  156. lib/perl5/site_perl/Bio/Index/Fasta.pm
  157. lib/perl5/site_perl/Bio/Index/Fastq.pm
  158. lib/perl5/site_perl/Bio/Index/GenBank.pm
  159. lib/perl5/site_perl/Bio/Index/Qual.pm
  160. lib/perl5/site_perl/Bio/Index/SwissPfam.pm
  161. lib/perl5/site_perl/Bio/Index/Swissprot.pm
  162. lib/perl5/site_perl/Bio/LocatableSeq.pm
  163. lib/perl5/site_perl/Bio/Location/Atomic.pm
  164. lib/perl5/site_perl/Bio/Location/AvWithinCoordPolicy.pm
  165. lib/perl5/site_perl/Bio/Location/CoordinatePolicyI.pm
  166. lib/perl5/site_perl/Bio/Location/Fuzzy.pm
  167. lib/perl5/site_perl/Bio/Location/FuzzyLocationI.pm
  168. lib/perl5/site_perl/Bio/Location/NarrowestCoordPolicy.pm
  169. lib/perl5/site_perl/Bio/Location/Simple.pm
  170. lib/perl5/site_perl/Bio/Location/Split.pm
  171. lib/perl5/site_perl/Bio/Location/SplitLocationI.pm
  172. lib/perl5/site_perl/Bio/Location/WidestCoordPolicy.pm
  173. lib/perl5/site_perl/Bio/LocationI.pm
  174. lib/perl5/site_perl/Bio/Matrix/Generic.pm
  175. lib/perl5/site_perl/Bio/Matrix/IO.pm
  176. lib/perl5/site_perl/Bio/Matrix/IO/mlagan.pm
  177. lib/perl5/site_perl/Bio/Matrix/IO/phylip.pm
  178. lib/perl5/site_perl/Bio/Matrix/IO/scoring.pm
  179. lib/perl5/site_perl/Bio/Matrix/MatrixI.pm
  180. lib/perl5/site_perl/Bio/Matrix/Mlagan.pm
  181. lib/perl5/site_perl/Bio/Matrix/PSM/IO.pm
  182. lib/perl5/site_perl/Bio/Matrix/PSM/IO/mast.pm
  183. lib/perl5/site_perl/Bio/Matrix/PSM/IO/masta.pm
  184. lib/perl5/site_perl/Bio/Matrix/PSM/IO/meme.pm
  185. lib/perl5/site_perl/Bio/Matrix/PSM/IO/psiblast.pm
  186. lib/perl5/site_perl/Bio/Matrix/PSM/IO/transfac.pm
  187. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSite.pm
  188. lib/perl5/site_perl/Bio/Matrix/PSM/InstanceSiteI.pm
  189. lib/perl5/site_perl/Bio/Matrix/PSM/ProtMatrix.pm
  190. lib/perl5/site_perl/Bio/Matrix/PSM/ProtPsm.pm
  191. lib/perl5/site_perl/Bio/Matrix/PSM/Psm.pm
  192. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeader.pm
  193. lib/perl5/site_perl/Bio/Matrix/PSM/PsmHeaderI.pm
  194. lib/perl5/site_perl/Bio/Matrix/PSM/PsmI.pm
  195. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrix.pm
  196. lib/perl5/site_perl/Bio/Matrix/PSM/SiteMatrixI.pm
  197. lib/perl5/site_perl/Bio/Matrix/PhylipDist.pm
  198. lib/perl5/site_perl/Bio/Matrix/Scoring.pm
  199. lib/perl5/site_perl/Bio/Ontology/DocumentRegistry.pm
  200. lib/perl5/site_perl/Bio/Ontology/GOterm.pm
  201. lib/perl5/site_perl/Bio/Ontology/InterProTerm.pm
  202. lib/perl5/site_perl/Bio/Ontology/OBOEngine.pm
  203. lib/perl5/site_perl/Bio/Ontology/OBOterm.pm
  204. lib/perl5/site_perl/Bio/Ontology/Ontology.pm
  205. lib/perl5/site_perl/Bio/Ontology/OntologyEngineI.pm
  206. lib/perl5/site_perl/Bio/Ontology/OntologyI.pm
  207. lib/perl5/site_perl/Bio/Ontology/OntologyStore.pm
  208. lib/perl5/site_perl/Bio/Ontology/Path.pm
  209. lib/perl5/site_perl/Bio/Ontology/PathI.pm
  210. lib/perl5/site_perl/Bio/Ontology/Relationship.pm
  211. lib/perl5/site_perl/Bio/Ontology/RelationshipFactory.pm
  212. lib/perl5/site_perl/Bio/Ontology/RelationshipI.pm
  213. lib/perl5/site_perl/Bio/Ontology/RelationshipType.pm
  214. lib/perl5/site_perl/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
  215. lib/perl5/site_perl/Bio/Ontology/SimpleOntologyEngine.pm
  216. lib/perl5/site_perl/Bio/Ontology/Term.pm
  217. lib/perl5/site_perl/Bio/Ontology/TermFactory.pm
  218. lib/perl5/site_perl/Bio/Ontology/TermI.pm
  219. lib/perl5/site_perl/Bio/OntologyIO.pm
  220. lib/perl5/site_perl/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
  221. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterProHandler.pm
  222. lib/perl5/site_perl/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
  223. lib/perl5/site_perl/Bio/OntologyIO/InterProParser.pm
  224. lib/perl5/site_perl/Bio/OntologyIO/dagflat.pm
  225. lib/perl5/site_perl/Bio/OntologyIO/goflat.pm
  226. lib/perl5/site_perl/Bio/OntologyIO/obo.pm
  227. lib/perl5/site_perl/Bio/OntologyIO/simplehierarchy.pm
  228. lib/perl5/site_perl/Bio/OntologyIO/soflat.pm
  229. lib/perl5/site_perl/Bio/ParameterBaseI.pm
  230. lib/perl5/site_perl/Bio/PrimarySeq.pm
  231. lib/perl5/site_perl/Bio/PrimarySeqI.pm
  232. lib/perl5/site_perl/Bio/PullParserI.pm
  233. lib/perl5/site_perl/Bio/Range.pm
  234. lib/perl5/site_perl/Bio/RangeI.pm
  235. lib/perl5/site_perl/Bio/Root/Exception.pm
  236. lib/perl5/site_perl/Bio/Root/HTTPget.pm
  237. lib/perl5/site_perl/Bio/Root/IO.pm
  238. lib/perl5/site_perl/Bio/Root/Root.pm
  239. lib/perl5/site_perl/Bio/Root/RootI.pm
  240. lib/perl5/site_perl/Bio/Root/Storable.pm
  241. lib/perl5/site_perl/Bio/Root/Test.pm
  242. lib/perl5/site_perl/Bio/Root/TestObject.pm
  243. lib/perl5/site_perl/Bio/Root/Utilities.pm
  244. lib/perl5/site_perl/Bio/Root/Version.pm
  245. lib/perl5/site_perl/Bio/Search/BlastStatistics.pm
  246. lib/perl5/site_perl/Bio/Search/BlastUtils.pm
  247. lib/perl5/site_perl/Bio/Search/DatabaseI.pm
  248. lib/perl5/site_perl/Bio/Search/GenericDatabase.pm
  249. lib/perl5/site_perl/Bio/Search/GenericStatistics.pm
  250. lib/perl5/site_perl/Bio/Search/HSP/BlastHSP.pm
  251. lib/perl5/site_perl/Bio/Search/HSP/BlastPullHSP.pm
  252. lib/perl5/site_perl/Bio/Search/HSP/FastaHSP.pm
  253. lib/perl5/site_perl/Bio/Search/HSP/GenericHSP.pm
  254. lib/perl5/site_perl/Bio/Search/HSP/HSPFactory.pm
  255. lib/perl5/site_perl/Bio/Search/HSP/HSPI.pm
  256. lib/perl5/site_perl/Bio/Search/HSP/ModelHSP.pm
  257. lib/perl5/site_perl/Bio/Search/HSP/PSLHSP.pm
  258. lib/perl5/site_perl/Bio/Search/HSP/PsiBlastHSP.pm
  259. lib/perl5/site_perl/Bio/Search/HSP/PullHSPI.pm
  260. lib/perl5/site_perl/Bio/Search/HSP/WABAHSP.pm
  261. lib/perl5/site_perl/Bio/Search/Hit/BlastHit.pm
  262. lib/perl5/site_perl/Bio/Search/Hit/BlastPullHit.pm
  263. lib/perl5/site_perl/Bio/Search/Hit/Fasta.pm
  264. lib/perl5/site_perl/Bio/Search/Hit/GenericHit.pm
  265. lib/perl5/site_perl/Bio/Search/Hit/HitFactory.pm
  266. lib/perl5/site_perl/Bio/Search/Hit/HitI.pm
  267. lib/perl5/site_perl/Bio/Search/Hit/ModelHit.pm
  268. lib/perl5/site_perl/Bio/Search/Hit/PsiBlastHit.pm
  269. lib/perl5/site_perl/Bio/Search/Hit/PullHitI.pm
  270. lib/perl5/site_perl/Bio/Search/Iteration/GenericIteration.pm
  271. lib/perl5/site_perl/Bio/Search/Iteration/IterationI.pm
  272. lib/perl5/site_perl/Bio/Search/Processor.pm
  273. lib/perl5/site_perl/Bio/Search/Result/BlastPullResult.pm
  274. lib/perl5/site_perl/Bio/Search/Result/BlastResult.pm
  275. lib/perl5/site_perl/Bio/Search/Result/CrossMatchResult.pm
  276. lib/perl5/site_perl/Bio/Search/Result/GenericResult.pm
  277. lib/perl5/site_perl/Bio/Search/Result/INFERNALResult.pm
  278. lib/perl5/site_perl/Bio/Search/Result/PullResultI.pm
  279. lib/perl5/site_perl/Bio/Search/Result/ResultFactory.pm
  280. lib/perl5/site_perl/Bio/Search/Result/ResultI.pm
  281. lib/perl5/site_perl/Bio/Search/Result/WABAResult.pm
  282. lib/perl5/site_perl/Bio/Search/SearchUtils.pm
  283. lib/perl5/site_perl/Bio/Search/StatisticsI.pm
  284. lib/perl5/site_perl/Bio/Search/Tiling/MapTileUtils.pm
  285. lib/perl5/site_perl/Bio/Search/Tiling/MapTiling.pm
  286. lib/perl5/site_perl/Bio/Search/Tiling/TilingI.pm
  287. lib/perl5/site_perl/Bio/SearchIO.pm
  288. lib/perl5/site_perl/Bio/SearchIO/EventHandlerI.pm
  289. lib/perl5/site_perl/Bio/SearchIO/FastHitEventBuilder.pm
  290. lib/perl5/site_perl/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
  291. lib/perl5/site_perl/Bio/SearchIO/SearchResultEventBuilder.pm
  292. lib/perl5/site_perl/Bio/SearchIO/SearchWriterI.pm
  293. lib/perl5/site_perl/Bio/SearchIO/Writer/GbrowseGFF.pm
  294. lib/perl5/site_perl/Bio/SearchIO/Writer/HSPTableWriter.pm
  295. lib/perl5/site_perl/Bio/SearchIO/Writer/HTMLResultWriter.pm
  296. lib/perl5/site_perl/Bio/SearchIO/Writer/HitTableWriter.pm
  297. lib/perl5/site_perl/Bio/SearchIO/Writer/ResultTableWriter.pm
  298. lib/perl5/site_perl/Bio/SearchIO/Writer/TextResultWriter.pm
  299. lib/perl5/site_perl/Bio/SearchIO/axt.pm
  300. lib/perl5/site_perl/Bio/SearchIO/blast.pm
  301. lib/perl5/site_perl/Bio/SearchIO/blast_pull.pm
  302. lib/perl5/site_perl/Bio/SearchIO/blasttable.pm
  303. lib/perl5/site_perl/Bio/SearchIO/cross_match.pm
  304. lib/perl5/site_perl/Bio/SearchIO/erpin.pm
  305. lib/perl5/site_perl/Bio/SearchIO/exonerate.pm
  306. lib/perl5/site_perl/Bio/SearchIO/fasta.pm
  307. lib/perl5/site_perl/Bio/SearchIO/gmap_f9.pm
  308. lib/perl5/site_perl/Bio/SearchIO/infernal.pm
  309. lib/perl5/site_perl/Bio/SearchIO/megablast.pm
  310. lib/perl5/site_perl/Bio/SearchIO/psl.pm
  311. lib/perl5/site_perl/Bio/SearchIO/rnamotif.pm
  312. lib/perl5/site_perl/Bio/SearchIO/sim4.pm
  313. lib/perl5/site_perl/Bio/SearchIO/waba.pm
  314. lib/perl5/site_perl/Bio/SearchIO/wise.pm
  315. lib/perl5/site_perl/Bio/Seq.pm
  316. lib/perl5/site_perl/Bio/Seq/BaseSeqProcessor.pm
  317. lib/perl5/site_perl/Bio/Seq/EncodedSeq.pm
  318. lib/perl5/site_perl/Bio/Seq/LargeLocatableSeq.pm
  319. lib/perl5/site_perl/Bio/Seq/LargePrimarySeq.pm
  320. lib/perl5/site_perl/Bio/Seq/LargeSeq.pm
  321. lib/perl5/site_perl/Bio/Seq/LargeSeqI.pm
  322. lib/perl5/site_perl/Bio/Seq/Meta.pm
  323. lib/perl5/site_perl/Bio/Seq/Meta/Array.pm
  324. lib/perl5/site_perl/Bio/Seq/MetaI.pm
  325. lib/perl5/site_perl/Bio/Seq/PrimaryQual.pm
  326. lib/perl5/site_perl/Bio/Seq/PrimedSeq.pm
  327. lib/perl5/site_perl/Bio/Seq/QualI.pm
  328. lib/perl5/site_perl/Bio/Seq/Quality.pm
  329. lib/perl5/site_perl/Bio/Seq/RichSeq.pm
  330. lib/perl5/site_perl/Bio/Seq/RichSeqI.pm
  331. lib/perl5/site_perl/Bio/Seq/SeqBuilder.pm
  332. lib/perl5/site_perl/Bio/Seq/SeqFactory.pm
  333. lib/perl5/site_perl/Bio/Seq/SeqFastaSpeedFactory.pm
  334. lib/perl5/site_perl/Bio/Seq/SequenceTrace.pm
  335. lib/perl5/site_perl/Bio/Seq/SimulatedRead.pm
  336. lib/perl5/site_perl/Bio/Seq/TraceI.pm
  337. lib/perl5/site_perl/Bio/SeqAnalysisParserI.pm
  338. lib/perl5/site_perl/Bio/SeqFeature/Amplicon.pm
  339. lib/perl5/site_perl/Bio/SeqFeature/AnnotationAdaptor.pm
  340. lib/perl5/site_perl/Bio/SeqFeature/Collection.pm
  341. lib/perl5/site_perl/Bio/SeqFeature/CollectionI.pm
  342. lib/perl5/site_perl/Bio/SeqFeature/Computation.pm
  343. lib/perl5/site_perl/Bio/SeqFeature/FeaturePair.pm
  344. lib/perl5/site_perl/Bio/SeqFeature/Gene/Exon.pm
  345. lib/perl5/site_perl/Bio/SeqFeature/Gene/ExonI.pm
  346. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructure.pm
  347. lib/perl5/site_perl/Bio/SeqFeature/Gene/GeneStructureI.pm
  348. lib/perl5/site_perl/Bio/SeqFeature/Gene/Intron.pm
  349. lib/perl5/site_perl/Bio/SeqFeature/Gene/NC_Feature.pm
  350. lib/perl5/site_perl/Bio/SeqFeature/Gene/Poly_A_site.pm
  351. lib/perl5/site_perl/Bio/SeqFeature/Gene/Promoter.pm
  352. lib/perl5/site_perl/Bio/SeqFeature/Gene/Transcript.pm
  353. lib/perl5/site_perl/Bio/SeqFeature/Gene/TranscriptI.pm
  354. lib/perl5/site_perl/Bio/SeqFeature/Gene/UTR.pm
  355. lib/perl5/site_perl/Bio/SeqFeature/Generic.pm
  356. lib/perl5/site_perl/Bio/SeqFeature/Lite.pm
  357. lib/perl5/site_perl/Bio/SeqFeature/PositionProxy.pm
  358. lib/perl5/site_perl/Bio/SeqFeature/Primer.pm
  359. lib/perl5/site_perl/Bio/SeqFeature/Similarity.pm
  360. lib/perl5/site_perl/Bio/SeqFeature/SimilarityPair.pm
  361. lib/perl5/site_perl/Bio/SeqFeature/SubSeq.pm
  362. lib/perl5/site_perl/Bio/SeqFeature/Tools/FeatureNamer.pm
  363. lib/perl5/site_perl/Bio/SeqFeature/Tools/IDHandler.pm
  364. lib/perl5/site_perl/Bio/SeqFeature/Tools/TypeMapper.pm
  365. lib/perl5/site_perl/Bio/SeqFeature/Tools/Unflattener.pm
  366. lib/perl5/site_perl/Bio/SeqFeature/TypedSeqFeatureI.pm
  367. lib/perl5/site_perl/Bio/SeqFeatureI.pm
  368. lib/perl5/site_perl/Bio/SeqI.pm
  369. lib/perl5/site_perl/Bio/SeqIO.pm
  370. lib/perl5/site_perl/Bio/SeqIO/FTHelper.pm
  371. lib/perl5/site_perl/Bio/SeqIO/Handler/GenericRichSeqHandler.pm
  372. lib/perl5/site_perl/Bio/SeqIO/MultiFile.pm
  373. lib/perl5/site_perl/Bio/SeqIO/ace.pm
  374. lib/perl5/site_perl/Bio/SeqIO/asciitree.pm
  375. lib/perl5/site_perl/Bio/SeqIO/bsml.pm
  376. lib/perl5/site_perl/Bio/SeqIO/bsml_sax.pm
  377. lib/perl5/site_perl/Bio/SeqIO/embl.pm
  378. lib/perl5/site_perl/Bio/SeqIO/embldriver.pm
  379. lib/perl5/site_perl/Bio/SeqIO/fasta.pm
  380. lib/perl5/site_perl/Bio/SeqIO/fastq.pm
  381. lib/perl5/site_perl/Bio/SeqIO/game.pm
  382. lib/perl5/site_perl/Bio/SeqIO/game/featHandler.pm
  383. lib/perl5/site_perl/Bio/SeqIO/game/gameHandler.pm
  384. lib/perl5/site_perl/Bio/SeqIO/game/gameSubs.pm
  385. lib/perl5/site_perl/Bio/SeqIO/game/gameWriter.pm
  386. lib/perl5/site_perl/Bio/SeqIO/game/seqHandler.pm
  387. lib/perl5/site_perl/Bio/SeqIO/gbdriver.pm
  388. lib/perl5/site_perl/Bio/SeqIO/gbxml.pm
  389. lib/perl5/site_perl/Bio/SeqIO/gcg.pm
  390. lib/perl5/site_perl/Bio/SeqIO/genbank.pm
  391. lib/perl5/site_perl/Bio/SeqIO/interpro.pm
  392. lib/perl5/site_perl/Bio/SeqIO/kegg.pm
  393. lib/perl5/site_perl/Bio/SeqIO/largefasta.pm
  394. lib/perl5/site_perl/Bio/SeqIO/locuslink.pm
  395. lib/perl5/site_perl/Bio/SeqIO/mbsout.pm
  396. lib/perl5/site_perl/Bio/SeqIO/metafasta.pm
  397. lib/perl5/site_perl/Bio/SeqIO/msout.pm
  398. lib/perl5/site_perl/Bio/SeqIO/phd.pm
  399. lib/perl5/site_perl/Bio/SeqIO/pir.pm
  400. lib/perl5/site_perl/Bio/SeqIO/qual.pm
  401. lib/perl5/site_perl/Bio/SeqIO/raw.pm
  402. lib/perl5/site_perl/Bio/SeqIO/scf.pm
  403. lib/perl5/site_perl/Bio/SeqIO/seqxml.pm
  404. lib/perl5/site_perl/Bio/SeqIO/swiss.pm
  405. lib/perl5/site_perl/Bio/SeqIO/swissdriver.pm
  406. lib/perl5/site_perl/Bio/SeqIO/tab.pm
  407. lib/perl5/site_perl/Bio/SeqIO/table.pm
  408. lib/perl5/site_perl/Bio/SeqIO/tigr.pm
  409. lib/perl5/site_perl/Bio/SeqIO/tigrxml.pm
  410. lib/perl5/site_perl/Bio/SeqIO/tinyseq.pm
  411. lib/perl5/site_perl/Bio/SeqIO/tinyseq/tinyseqHandler.pm
  412. lib/perl5/site_perl/Bio/SeqUtils.pm
  413. lib/perl5/site_perl/Bio/SimpleAlign.pm
  414. lib/perl5/site_perl/Bio/SimpleAnalysisI.pm
  415. lib/perl5/site_perl/Bio/Species.pm
  416. lib/perl5/site_perl/Bio/Taxon.pm
  417. lib/perl5/site_perl/Bio/Tools/Alignment/Consed.pm
  418. lib/perl5/site_perl/Bio/Tools/Alignment/Trim.pm
  419. lib/perl5/site_perl/Bio/Tools/AmpliconSearch.pm
  420. lib/perl5/site_perl/Bio/Tools/Analysis/SimpleAnalysisBase.pm
  421. lib/perl5/site_perl/Bio/Tools/AnalysisResult.pm
  422. lib/perl5/site_perl/Bio/Tools/Blat.pm
  423. lib/perl5/site_perl/Bio/Tools/CodonTable.pm
  424. lib/perl5/site_perl/Bio/Tools/Coil.pm
  425. lib/perl5/site_perl/Bio/Tools/ECnumber.pm
  426. lib/perl5/site_perl/Bio/Tools/EMBOSS/Palindrome.pm
  427. lib/perl5/site_perl/Bio/Tools/EPCR.pm
  428. lib/perl5/site_perl/Bio/Tools/ESTScan.pm
  429. lib/perl5/site_perl/Bio/Tools/Eponine.pm
  430. lib/perl5/site_perl/Bio/Tools/Est2Genome.pm
  431. lib/perl5/site_perl/Bio/Tools/Fgenesh.pm
  432. lib/perl5/site_perl/Bio/Tools/FootPrinter.pm
  433. lib/perl5/site_perl/Bio/Tools/GFF.pm
  434. lib/perl5/site_perl/Bio/Tools/Geneid.pm
  435. lib/perl5/site_perl/Bio/Tools/Genemark.pm
  436. lib/perl5/site_perl/Bio/Tools/Genewise.pm
  437. lib/perl5/site_perl/Bio/Tools/Genomewise.pm
  438. lib/perl5/site_perl/Bio/Tools/Genscan.pm
  439. lib/perl5/site_perl/Bio/Tools/Glimmer.pm
  440. lib/perl5/site_perl/Bio/Tools/Grail.pm
  441. lib/perl5/site_perl/Bio/Tools/GuessSeqFormat.pm
  442. lib/perl5/site_perl/Bio/Tools/IUPAC.pm
  443. lib/perl5/site_perl/Bio/Tools/Lucy.pm
  444. lib/perl5/site_perl/Bio/Tools/MZEF.pm
  445. lib/perl5/site_perl/Bio/Tools/Match.pm
  446. lib/perl5/site_perl/Bio/Tools/OddCodes.pm
  447. lib/perl5/site_perl/Bio/Tools/Phylo/Gerp.pm
  448. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy.pm
  449. lib/perl5/site_perl/Bio/Tools/Phylo/Molphy/Result.pm
  450. lib/perl5/site_perl/Bio/Tools/Phylo/Phylip/ProtDist.pm
  451. lib/perl5/site_perl/Bio/Tools/Prediction/Exon.pm
  452. lib/perl5/site_perl/Bio/Tools/Prediction/Gene.pm
  453. lib/perl5/site_perl/Bio/Tools/Primer/Assessor/Base.pm
  454. lib/perl5/site_perl/Bio/Tools/Primer/AssessorI.pm
  455. lib/perl5/site_perl/Bio/Tools/Primer/Feature.pm
  456. lib/perl5/site_perl/Bio/Tools/Primer/Pair.pm
  457. lib/perl5/site_perl/Bio/Tools/Primer3.pm
  458. lib/perl5/site_perl/Bio/Tools/Prints.pm
  459. lib/perl5/site_perl/Bio/Tools/Profile.pm
  460. lib/perl5/site_perl/Bio/Tools/Promoterwise.pm
  461. lib/perl5/site_perl/Bio/Tools/PrositeScan.pm
  462. lib/perl5/site_perl/Bio/Tools/Pseudowise.pm
  463. lib/perl5/site_perl/Bio/Tools/QRNA.pm
  464. lib/perl5/site_perl/Bio/Tools/RandomDistFunctions.pm
  465. lib/perl5/site_perl/Bio/Tools/RepeatMasker.pm
  466. lib/perl5/site_perl/Bio/Tools/Run/Analysis.pm
  467. lib/perl5/site_perl/Bio/Tools/Run/AnalysisFactory.pm
  468. lib/perl5/site_perl/Bio/Tools/Run/GenericParameters.pm
  469. lib/perl5/site_perl/Bio/Tools/Run/ParametersI.pm
  470. lib/perl5/site_perl/Bio/Tools/Run/Phylo/PhyloBase.pm
  471. lib/perl5/site_perl/Bio/Tools/Run/WrapperBase.pm
  472. lib/perl5/site_perl/Bio/Tools/Run/WrapperBase/CommandExts.pm
  473. lib/perl5/site_perl/Bio/Tools/Seg.pm
  474. lib/perl5/site_perl/Bio/Tools/SeqPattern.pm
  475. lib/perl5/site_perl/Bio/Tools/SeqPattern/Backtranslate.pm
  476. lib/perl5/site_perl/Bio/Tools/SeqStats.pm
  477. lib/perl5/site_perl/Bio/Tools/SeqWords.pm
  478. lib/perl5/site_perl/Bio/Tools/Sigcleave.pm
  479. lib/perl5/site_perl/Bio/Tools/Signalp.pm
  480. lib/perl5/site_perl/Bio/Tools/Signalp/ExtendedSignalp.pm
  481. lib/perl5/site_perl/Bio/Tools/Sim4/Exon.pm
  482. lib/perl5/site_perl/Bio/Tools/Sim4/Results.pm
  483. lib/perl5/site_perl/Bio/Tools/Spidey/Exon.pm
  484. lib/perl5/site_perl/Bio/Tools/Spidey/Results.pm
  485. lib/perl5/site_perl/Bio/Tools/TandemRepeatsFinder.pm
  486. lib/perl5/site_perl/Bio/Tools/TargetP.pm
  487. lib/perl5/site_perl/Bio/Tools/Tmhmm.pm
  488. lib/perl5/site_perl/Bio/Tools/ipcress.pm
  489. lib/perl5/site_perl/Bio/Tools/isPcr.pm
  490. lib/perl5/site_perl/Bio/Tools/pICalculator.pm
  491. lib/perl5/site_perl/Bio/Tools/tRNAscanSE.pm
  492. lib/perl5/site_perl/Bio/Tree/AnnotatableNode.pm
  493. lib/perl5/site_perl/Bio/Tree/Compatible.pm
  494. lib/perl5/site_perl/Bio/Tree/DistanceFactory.pm
  495. lib/perl5/site_perl/Bio/Tree/Node.pm
  496. lib/perl5/site_perl/Bio/Tree/NodeI.pm
  497. lib/perl5/site_perl/Bio/Tree/NodeNHX.pm
  498. lib/perl5/site_perl/Bio/Tree/RandomFactory.pm
  499. lib/perl5/site_perl/Bio/Tree/Statistics.pm
  500. lib/perl5/site_perl/Bio/Tree/Tree.pm
  501. lib/perl5/site_perl/Bio/Tree/TreeFunctionsI.pm
  502. lib/perl5/site_perl/Bio/Tree/TreeI.pm
  503. lib/perl5/site_perl/Bio/TreeIO.pm
  504. lib/perl5/site_perl/Bio/TreeIO/NewickParser.pm
  505. lib/perl5/site_perl/Bio/TreeIO/TreeEventBuilder.pm
  506. lib/perl5/site_perl/Bio/TreeIO/cluster.pm
  507. lib/perl5/site_perl/Bio/TreeIO/lintree.pm
  508. lib/perl5/site_perl/Bio/TreeIO/newick.pm
  509. lib/perl5/site_perl/Bio/TreeIO/nexus.pm
  510. lib/perl5/site_perl/Bio/TreeIO/nhx.pm
  511. lib/perl5/site_perl/Bio/TreeIO/pag.pm
  512. lib/perl5/site_perl/Bio/TreeIO/phyloxml.pm
  513. lib/perl5/site_perl/Bio/TreeIO/tabtree.pm
  514. lib/perl5/site_perl/Bio/UpdateableSeqI.pm
  515. lib/perl5/site_perl/Bio/WebAgent.pm
  516. lib/perl5/site_perl/BioPerl.pm
  517. lib/perl5/site_perl/man/man1/bp_aacomp.1.gz
  518. lib/perl5/site_perl/man/man1/bp_bioflat_index.1.gz
  519. lib/perl5/site_perl/man/man1/bp_biogetseq.1.gz
  520. lib/perl5/site_perl/man/man1/bp_dbsplit.1.gz
  521. lib/perl5/site_perl/man/man1/bp_extract_feature_seq.1.gz
  522. lib/perl5/site_perl/man/man1/bp_fastam9_to_table.1.gz
  523. lib/perl5/site_perl/man/man1/bp_fetch.1.gz
  524. lib/perl5/site_perl/man/man1/bp_filter_search.1.gz
  525. lib/perl5/site_perl/man/man1/bp_find-blast-matches.1.gz
  526. lib/perl5/site_perl/man/man1/bp_gccalc.1.gz
  527. lib/perl5/site_perl/man/man1/bp_genbank2gff3.1.gz
  528. lib/perl5/site_perl/man/man1/bp_index.1.gz
  529. lib/perl5/site_perl/man/man1/bp_local_taxonomydb_query.1.gz
  530. lib/perl5/site_perl/man/man1/bp_make_mrna_protein.1.gz
  531. lib/perl5/site_perl/man/man1/bp_mask_by_search.1.gz
  532. lib/perl5/site_perl/man/man1/bp_mrtrans.1.gz
  533. lib/perl5/site_perl/man/man1/bp_mutate.1.gz
  534. lib/perl5/site_perl/man/man1/bp_nexus2nh.1.gz
  535. lib/perl5/site_perl/man/man1/bp_nrdb.1.gz
  536. lib/perl5/site_perl/man/man1/bp_oligo_count.1.gz
  537. lib/perl5/site_perl/man/man1/bp_process_gadfly.1.gz
  538. lib/perl5/site_perl/man/man1/bp_process_sgd.1.gz
  539. lib/perl5/site_perl/man/man1/bp_revtrans-motif.1.gz
  540. lib/perl5/site_perl/man/man1/bp_search2alnblocks.1.gz
  541. lib/perl5/site_perl/man/man1/bp_search2gff.1.gz
  542. lib/perl5/site_perl/man/man1/bp_search2table.1.gz
  543. lib/perl5/site_perl/man/man1/bp_search2tribe.1.gz
  544. lib/perl5/site_perl/man/man1/bp_seq_length.1.gz
  545. lib/perl5/site_perl/man/man1/bp_seqconvert.1.gz
  546. lib/perl5/site_perl/man/man1/bp_seqcut.1.gz
  547. lib/perl5/site_perl/man/man1/bp_seqpart.1.gz
  548. lib/perl5/site_perl/man/man1/bp_seqret.1.gz
  549. lib/perl5/site_perl/man/man1/bp_seqretsplit.1.gz
  550. lib/perl5/site_perl/man/man1/bp_split_seq.1.gz
  551. lib/perl5/site_perl/man/man1/bp_sreformat.1.gz
  552. lib/perl5/site_perl/man/man1/bp_taxid4species.1.gz
  553. lib/perl5/site_perl/man/man1/bp_taxonomy2tree.1.gz
  554. lib/perl5/site_perl/man/man1/bp_translate_seq.1.gz
  555. lib/perl5/site_perl/man/man1/bp_tree2pag.1.gz
  556. lib/perl5/site_perl/man/man1/bp_unflatten_seq.1.gz
  557. lib/perl5/site_perl/man/man3/Bio::Align::AlignI.3.gz
  558. lib/perl5/site_perl/man/man3/Bio::Align::DNAStatistics.3.gz
  559. lib/perl5/site_perl/man/man3/Bio::Align::PairwiseStatistics.3.gz
  560. lib/perl5/site_perl/man/man3/Bio::Align::ProteinStatistics.3.gz
  561. lib/perl5/site_perl/man/man3/Bio::Align::StatisticsI.3.gz
  562. lib/perl5/site_perl/man/man3/Bio::Align::Utilities.3.gz
  563. lib/perl5/site_perl/man/man3/Bio::AlignIO.3.gz
  564. lib/perl5/site_perl/man/man3/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
  565. lib/perl5/site_perl/man/man3/Bio::AlignIO::arp.3.gz
  566. lib/perl5/site_perl/man/man3/Bio::AlignIO::bl2seq.3.gz
  567. lib/perl5/site_perl/man/man3/Bio::AlignIO::clustalw.3.gz
  568. lib/perl5/site_perl/man/man3/Bio::AlignIO::emboss.3.gz
  569. lib/perl5/site_perl/man/man3/Bio::AlignIO::fasta.3.gz
  570. lib/perl5/site_perl/man/man3/Bio::AlignIO::largemultifasta.3.gz
  571. lib/perl5/site_perl/man/man3/Bio::AlignIO::maf.3.gz
  572. lib/perl5/site_perl/man/man3/Bio::AlignIO::mase.3.gz
  573. lib/perl5/site_perl/man/man3/Bio::AlignIO::mega.3.gz
  574. lib/perl5/site_perl/man/man3/Bio::AlignIO::meme.3.gz
  575. lib/perl5/site_perl/man/man3/Bio::AlignIO::metafasta.3.gz
  576. lib/perl5/site_perl/man/man3/Bio::AlignIO::msf.3.gz
  577. lib/perl5/site_perl/man/man3/Bio::AlignIO::nexus.3.gz
  578. lib/perl5/site_perl/man/man3/Bio::AlignIO::pfam.3.gz
  579. lib/perl5/site_perl/man/man3/Bio::AlignIO::phylip.3.gz
  580. lib/perl5/site_perl/man/man3/Bio::AlignIO::po.3.gz
  581. lib/perl5/site_perl/man/man3/Bio::AlignIO::proda.3.gz
  582. lib/perl5/site_perl/man/man3/Bio::AlignIO::prodom.3.gz
  583. lib/perl5/site_perl/man/man3/Bio::AlignIO::psi.3.gz
  584. lib/perl5/site_perl/man/man3/Bio::AlignIO::selex.3.gz
  585. lib/perl5/site_perl/man/man3/Bio::AlignIO::xmfa.3.gz
  586. lib/perl5/site_perl/man/man3/Bio::AnalysisI.3.gz
  587. lib/perl5/site_perl/man/man3/Bio::AnalysisParserI.3.gz
  588. lib/perl5/site_perl/man/man3/Bio::AnalysisResultI.3.gz
  589. lib/perl5/site_perl/man/man3/Bio::AnnotatableI.3.gz
  590. lib/perl5/site_perl/man/man3/Bio::Annotation::AnnotationFactory.3.gz
  591. lib/perl5/site_perl/man/man3/Bio::Annotation::Collection.3.gz
  592. lib/perl5/site_perl/man/man3/Bio::Annotation::Comment.3.gz
  593. lib/perl5/site_perl/man/man3/Bio::Annotation::DBLink.3.gz
  594. lib/perl5/site_perl/man/man3/Bio::Annotation::OntologyTerm.3.gz
  595. lib/perl5/site_perl/man/man3/Bio::Annotation::Reference.3.gz
  596. lib/perl5/site_perl/man/man3/Bio::Annotation::Relation.3.gz
  597. lib/perl5/site_perl/man/man3/Bio::Annotation::SimpleValue.3.gz
  598. lib/perl5/site_perl/man/man3/Bio::Annotation::StructuredValue.3.gz
  599. lib/perl5/site_perl/man/man3/Bio::Annotation::TagTree.3.gz
  600. lib/perl5/site_perl/man/man3/Bio::Annotation::Target.3.gz
  601. lib/perl5/site_perl/man/man3/Bio::Annotation::Tree.3.gz
  602. lib/perl5/site_perl/man/man3/Bio::Annotation::TypeManager.3.gz
  603. lib/perl5/site_perl/man/man3/Bio::AnnotationCollectionI.3.gz
  604. lib/perl5/site_perl/man/man3/Bio::AnnotationI.3.gz
  605. lib/perl5/site_perl/man/man3/Bio::CodonUsage::IO.3.gz
  606. lib/perl5/site_perl/man/man3/Bio::CodonUsage::Table.3.gz
  607. lib/perl5/site_perl/man/man3/Bio::DB::DBFetch.3.gz
  608. lib/perl5/site_perl/man/man3/Bio::DB::Failover.3.gz
  609. lib/perl5/site_perl/man/man3/Bio::DB::Fasta.3.gz
  610. lib/perl5/site_perl/man/man3/Bio::DB::FileCache.3.gz
  611. lib/perl5/site_perl/man/man3/Bio::DB::Flat.3.gz
  612. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB.3.gz
  613. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::embl.3.gz
  614. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::fasta.3.gz
  615. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::genbank.3.gz
  616. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BDB::swiss.3.gz
  617. lib/perl5/site_perl/man/man3/Bio::DB::Flat::BinarySearch.3.gz
  618. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Binning.3.gz
  619. lib/perl5/site_perl/man/man3/Bio::DB::GFF::Util::Rearrange.3.gz
  620. lib/perl5/site_perl/man/man3/Bio::DB::GenericWebAgent.3.gz
  621. lib/perl5/site_perl/man/man3/Bio::DB::InMemoryCache.3.gz
  622. lib/perl5/site_perl/man/man3/Bio::DB::IndexedBase.3.gz
  623. lib/perl5/site_perl/man/man3/Bio::DB::LocationI.3.gz
  624. lib/perl5/site_perl/man/man3/Bio::DB::Qual.3.gz
  625. lib/perl5/site_perl/man/man3/Bio::DB::Query::WebQuery.3.gz
  626. lib/perl5/site_perl/man/man3/Bio::DB::QueryI.3.gz
  627. lib/perl5/site_perl/man/man3/Bio::DB::RandomAccessI.3.gz
  628. lib/perl5/site_perl/man/man3/Bio::DB::ReferenceI.3.gz
  629. lib/perl5/site_perl/man/man3/Bio::DB::Registry.3.gz
  630. lib/perl5/site_perl/man/man3/Bio::DB::SeqI.3.gz
  631. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy.3.gz
  632. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::flatfile.3.gz
  633. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::greengenes.3.gz
  634. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::list.3.gz
  635. lib/perl5/site_perl/man/man3/Bio::DB::Taxonomy::silva.3.gz
  636. lib/perl5/site_perl/man/man3/Bio::DB::UpdateableSeqI.3.gz
  637. lib/perl5/site_perl/man/man3/Bio::DB::WebDBSeqI.3.gz
  638. lib/perl5/site_perl/man/man3/Bio::DBLinkContainerI.3.gz
  639. lib/perl5/site_perl/man/man3/Bio::Das::FeatureTypeI.3.gz
  640. lib/perl5/site_perl/man/man3/Bio::Das::SegmentI.3.gz
  641. lib/perl5/site_perl/man/man3/Bio::DasI.3.gz
  642. lib/perl5/site_perl/man/man3/Bio::DescribableI.3.gz
  643. lib/perl5/site_perl/man/man3/Bio::Event::EventGeneratorI.3.gz
  644. lib/perl5/site_perl/man/man3/Bio::Event::EventHandlerI.3.gz
  645. lib/perl5/site_perl/man/man3/Bio::Factory::AnalysisI.3.gz
  646. lib/perl5/site_perl/man/man3/Bio::Factory::ApplicationFactoryI.3.gz
  647. lib/perl5/site_perl/man/man3/Bio::Factory::DriverFactory.3.gz
  648. lib/perl5/site_perl/man/man3/Bio::Factory::FTLocationFactory.3.gz
  649. lib/perl5/site_perl/man/man3/Bio::Factory::LocationFactoryI.3.gz
  650. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectBuilderI.3.gz
  651. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectFactory.3.gz
  652. lib/perl5/site_perl/man/man3/Bio::Factory::ObjectFactoryI.3.gz
  653. lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactory.3.gz
  654. lib/perl5/site_perl/man/man3/Bio::Factory::SeqAnalysisParserFactoryI.3.gz
  655. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceFactoryI.3.gz
  656. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceProcessorI.3.gz
  657. lib/perl5/site_perl/man/man3/Bio::Factory::SequenceStreamI.3.gz
  658. lib/perl5/site_perl/man/man3/Bio::Factory::TreeFactoryI.3.gz
  659. lib/perl5/site_perl/man/man3/Bio::FeatureHolderI.3.gz
  660. lib/perl5/site_perl/man/man3/Bio::HandlerBaseI.3.gz
  661. lib/perl5/site_perl/man/man3/Bio::IdCollectionI.3.gz
  662. lib/perl5/site_perl/man/man3/Bio::IdentifiableI.3.gz
  663. lib/perl5/site_perl/man/man3/Bio::Index::Abstract.3.gz
  664. lib/perl5/site_perl/man/man3/Bio::Index::AbstractSeq.3.gz
  665. lib/perl5/site_perl/man/man3/Bio::Index::Blast.3.gz
  666. lib/perl5/site_perl/man/man3/Bio::Index::BlastTable.3.gz
  667. lib/perl5/site_perl/man/man3/Bio::Index::EMBL.3.gz
  668. lib/perl5/site_perl/man/man3/Bio::Index::Fasta.3.gz
  669. lib/perl5/site_perl/man/man3/Bio::Index::Fastq.3.gz
  670. lib/perl5/site_perl/man/man3/Bio::Index::GenBank.3.gz
  671. lib/perl5/site_perl/man/man3/Bio::Index::Qual.3.gz
  672. lib/perl5/site_perl/man/man3/Bio::Index::SwissPfam.3.gz
  673. lib/perl5/site_perl/man/man3/Bio::Index::Swissprot.3.gz
  674. lib/perl5/site_perl/man/man3/Bio::LocatableSeq.3.gz
  675. lib/perl5/site_perl/man/man3/Bio::Location::Atomic.3.gz
  676. lib/perl5/site_perl/man/man3/Bio::Location::AvWithinCoordPolicy.3.gz
  677. lib/perl5/site_perl/man/man3/Bio::Location::CoordinatePolicyI.3.gz
  678. lib/perl5/site_perl/man/man3/Bio::Location::Fuzzy.3.gz
  679. lib/perl5/site_perl/man/man3/Bio::Location::FuzzyLocationI.3.gz
  680. lib/perl5/site_perl/man/man3/Bio::Location::NarrowestCoordPolicy.3.gz
  681. lib/perl5/site_perl/man/man3/Bio::Location::Simple.3.gz
  682. lib/perl5/site_perl/man/man3/Bio::Location::Split.3.gz
  683. lib/perl5/site_perl/man/man3/Bio::Location::SplitLocationI.3.gz
  684. lib/perl5/site_perl/man/man3/Bio::Location::WidestCoordPolicy.3.gz
  685. lib/perl5/site_perl/man/man3/Bio::LocationI.3.gz
  686. lib/perl5/site_perl/man/man3/Bio::Matrix::Generic.3.gz
  687. lib/perl5/site_perl/man/man3/Bio::Matrix::IO.3.gz
  688. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::mlagan.3.gz
  689. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::phylip.3.gz
  690. lib/perl5/site_perl/man/man3/Bio::Matrix::IO::scoring.3.gz
  691. lib/perl5/site_perl/man/man3/Bio::Matrix::MatrixI.3.gz
  692. lib/perl5/site_perl/man/man3/Bio::Matrix::Mlagan.3.gz
  693. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO.3.gz
  694. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::mast.3.gz
  695. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::masta.3.gz
  696. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::meme.3.gz
  697. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::psiblast.3.gz
  698. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::IO::transfac.3.gz
  699. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSite.3.gz
  700. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::InstanceSiteI.3.gz
  701. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtMatrix.3.gz
  702. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::ProtPsm.3.gz
  703. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::Psm.3.gz
  704. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeader.3.gz
  705. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmHeaderI.3.gz
  706. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::PsmI.3.gz
  707. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrix.3.gz
  708. lib/perl5/site_perl/man/man3/Bio::Matrix::PSM::SiteMatrixI.3.gz
  709. lib/perl5/site_perl/man/man3/Bio::Matrix::PhylipDist.3.gz
  710. lib/perl5/site_perl/man/man3/Bio::Matrix::Scoring.3.gz
  711. lib/perl5/site_perl/man/man3/Bio::Ontology::DocumentRegistry.3.gz
  712. lib/perl5/site_perl/man/man3/Bio::Ontology::GOterm.3.gz
  713. lib/perl5/site_perl/man/man3/Bio::Ontology::InterProTerm.3.gz
  714. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOEngine.3.gz
  715. lib/perl5/site_perl/man/man3/Bio::Ontology::OBOterm.3.gz
  716. lib/perl5/site_perl/man/man3/Bio::Ontology::Ontology.3.gz
  717. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyEngineI.3.gz
  718. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyI.3.gz
  719. lib/perl5/site_perl/man/man3/Bio::Ontology::OntologyStore.3.gz
  720. lib/perl5/site_perl/man/man3/Bio::Ontology::Path.3.gz
  721. lib/perl5/site_perl/man/man3/Bio::Ontology::PathI.3.gz
  722. lib/perl5/site_perl/man/man3/Bio::Ontology::Relationship.3.gz
  723. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipFactory.3.gz
  724. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipI.3.gz
  725. lib/perl5/site_perl/man/man3/Bio::Ontology::RelationshipType.3.gz
  726. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3.gz
  727. lib/perl5/site_perl/man/man3/Bio::Ontology::SimpleOntologyEngine.3.gz
  728. lib/perl5/site_perl/man/man3/Bio::Ontology::Term.3.gz
  729. lib/perl5/site_perl/man/man3/Bio::Ontology::TermFactory.3.gz
  730. lib/perl5/site_perl/man/man3/Bio::Ontology::TermI.3.gz
  731. lib/perl5/site_perl/man/man3/Bio::OntologyIO.3.gz
  732. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3.gz
  733. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterProHandler.3.gz
  734. lib/perl5/site_perl/man/man3/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3.gz
  735. lib/perl5/site_perl/man/man3/Bio::OntologyIO::InterProParser.3.gz
  736. lib/perl5/site_perl/man/man3/Bio::OntologyIO::dagflat.3.gz
  737. lib/perl5/site_perl/man/man3/Bio::OntologyIO::goflat.3.gz
  738. lib/perl5/site_perl/man/man3/Bio::OntologyIO::obo.3.gz
  739. lib/perl5/site_perl/man/man3/Bio::OntologyIO::simplehierarchy.3.gz
  740. lib/perl5/site_perl/man/man3/Bio::OntologyIO::soflat.3.gz
  741. lib/perl5/site_perl/man/man3/Bio::ParameterBaseI.3.gz
  742. lib/perl5/site_perl/man/man3/Bio::PrimarySeq.3.gz
  743. lib/perl5/site_perl/man/man3/Bio::PrimarySeqI.3.gz
  744. lib/perl5/site_perl/man/man3/Bio::PullParserI.3.gz
  745. lib/perl5/site_perl/man/man3/Bio::Range.3.gz
  746. lib/perl5/site_perl/man/man3/Bio::RangeI.3.gz
  747. lib/perl5/site_perl/man/man3/Bio::Root::Exception.3.gz
  748. lib/perl5/site_perl/man/man3/Bio::Root::HTTPget.3.gz
  749. lib/perl5/site_perl/man/man3/Bio::Root::IO.3.gz
  750. lib/perl5/site_perl/man/man3/Bio::Root::Root.3.gz
  751. lib/perl5/site_perl/man/man3/Bio::Root::RootI.3.gz
  752. lib/perl5/site_perl/man/man3/Bio::Root::Storable.3.gz
  753. lib/perl5/site_perl/man/man3/Bio::Root::Test.3.gz
  754. lib/perl5/site_perl/man/man3/Bio::Root::TestObject.3.gz
  755. lib/perl5/site_perl/man/man3/Bio::Root::Utilities.3.gz
  756. lib/perl5/site_perl/man/man3/Bio::Root::Version.3.gz
  757. lib/perl5/site_perl/man/man3/Bio::Search::BlastStatistics.3.gz
  758. lib/perl5/site_perl/man/man3/Bio::Search::BlastUtils.3.gz
  759. lib/perl5/site_perl/man/man3/Bio::Search::DatabaseI.3.gz
  760. lib/perl5/site_perl/man/man3/Bio::Search::GenericDatabase.3.gz
  761. lib/perl5/site_perl/man/man3/Bio::Search::GenericStatistics.3.gz
  762. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastHSP.3.gz
  763. lib/perl5/site_perl/man/man3/Bio::Search::HSP::BlastPullHSP.3.gz
  764. lib/perl5/site_perl/man/man3/Bio::Search::HSP::FastaHSP.3.gz
  765. lib/perl5/site_perl/man/man3/Bio::Search::HSP::GenericHSP.3.gz
  766. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPFactory.3.gz
  767. lib/perl5/site_perl/man/man3/Bio::Search::HSP::HSPI.3.gz
  768. lib/perl5/site_perl/man/man3/Bio::Search::HSP::ModelHSP.3.gz
  769. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PSLHSP.3.gz
  770. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PsiBlastHSP.3.gz
  771. lib/perl5/site_perl/man/man3/Bio::Search::HSP::PullHSPI.3.gz
  772. lib/perl5/site_perl/man/man3/Bio::Search::HSP::WABAHSP.3.gz
  773. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastHit.3.gz
  774. lib/perl5/site_perl/man/man3/Bio::Search::Hit::BlastPullHit.3.gz
  775. lib/perl5/site_perl/man/man3/Bio::Search::Hit::Fasta.3.gz
  776. lib/perl5/site_perl/man/man3/Bio::Search::Hit::GenericHit.3.gz
  777. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitFactory.3.gz
  778. lib/perl5/site_perl/man/man3/Bio::Search::Hit::HitI.3.gz
  779. lib/perl5/site_perl/man/man3/Bio::Search::Hit::ModelHit.3.gz
  780. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PsiBlastHit.3.gz
  781. lib/perl5/site_perl/man/man3/Bio::Search::Hit::PullHitI.3.gz
  782. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::GenericIteration.3.gz
  783. lib/perl5/site_perl/man/man3/Bio::Search::Iteration::IterationI.3.gz
  784. lib/perl5/site_perl/man/man3/Bio::Search::Processor.3.gz
  785. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastPullResult.3.gz
  786. lib/perl5/site_perl/man/man3/Bio::Search::Result::BlastResult.3.gz
  787. lib/perl5/site_perl/man/man3/Bio::Search::Result::CrossMatchResult.3.gz
  788. lib/perl5/site_perl/man/man3/Bio::Search::Result::GenericResult.3.gz
  789. lib/perl5/site_perl/man/man3/Bio::Search::Result::INFERNALResult.3.gz
  790. lib/perl5/site_perl/man/man3/Bio::Search::Result::PullResultI.3.gz
  791. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultFactory.3.gz
  792. lib/perl5/site_perl/man/man3/Bio::Search::Result::ResultI.3.gz
  793. lib/perl5/site_perl/man/man3/Bio::Search::Result::WABAResult.3.gz
  794. lib/perl5/site_perl/man/man3/Bio::Search::SearchUtils.3.gz
  795. lib/perl5/site_perl/man/man3/Bio::Search::StatisticsI.3.gz
  796. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTileUtils.3.gz
  797. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::MapTiling.3.gz
  798. lib/perl5/site_perl/man/man3/Bio::Search::Tiling::TilingI.3.gz
  799. lib/perl5/site_perl/man/man3/Bio::SearchIO.3.gz
  800. lib/perl5/site_perl/man/man3/Bio::SearchIO::EventHandlerI.3.gz
  801. lib/perl5/site_perl/man/man3/Bio::SearchIO::FastHitEventBuilder.3.gz
  802. lib/perl5/site_perl/man/man3/Bio::SearchIO::IteratedSearchResultEventBuilder.3.gz
  803. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchResultEventBuilder.3.gz
  804. lib/perl5/site_perl/man/man3/Bio::SearchIO::SearchWriterI.3.gz
  805. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::GbrowseGFF.3.gz
  806. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HSPTableWriter.3.gz
  807. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HTMLResultWriter.3.gz
  808. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::HitTableWriter.3.gz
  809. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::ResultTableWriter.3.gz
  810. lib/perl5/site_perl/man/man3/Bio::SearchIO::Writer::TextResultWriter.3.gz
  811. lib/perl5/site_perl/man/man3/Bio::SearchIO::axt.3.gz
  812. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast.3.gz
  813. lib/perl5/site_perl/man/man3/Bio::SearchIO::blast_pull.3.gz
  814. lib/perl5/site_perl/man/man3/Bio::SearchIO::blasttable.3.gz
  815. lib/perl5/site_perl/man/man3/Bio::SearchIO::cross_match.3.gz
  816. lib/perl5/site_perl/man/man3/Bio::SearchIO::erpin.3.gz
  817. lib/perl5/site_perl/man/man3/Bio::SearchIO::exonerate.3.gz
  818. lib/perl5/site_perl/man/man3/Bio::SearchIO::fasta.3.gz
  819. lib/perl5/site_perl/man/man3/Bio::SearchIO::gmap_f9.3.gz
  820. lib/perl5/site_perl/man/man3/Bio::SearchIO::infernal.3.gz
  821. lib/perl5/site_perl/man/man3/Bio::SearchIO::megablast.3.gz
  822. lib/perl5/site_perl/man/man3/Bio::SearchIO::psl.3.gz
  823. lib/perl5/site_perl/man/man3/Bio::SearchIO::rnamotif.3.gz
  824. lib/perl5/site_perl/man/man3/Bio::SearchIO::sim4.3.gz
  825. lib/perl5/site_perl/man/man3/Bio::SearchIO::waba.3.gz
  826. lib/perl5/site_perl/man/man3/Bio::SearchIO::wise.3.gz
  827. lib/perl5/site_perl/man/man3/Bio::Seq.3.gz
  828. lib/perl5/site_perl/man/man3/Bio::Seq::BaseSeqProcessor.3.gz
  829. lib/perl5/site_perl/man/man3/Bio::Seq::EncodedSeq.3.gz
  830. lib/perl5/site_perl/man/man3/Bio::Seq::LargeLocatableSeq.3.gz
  831. lib/perl5/site_perl/man/man3/Bio::Seq::LargePrimarySeq.3.gz
  832. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeq.3.gz
  833. lib/perl5/site_perl/man/man3/Bio::Seq::LargeSeqI.3.gz
  834. lib/perl5/site_perl/man/man3/Bio::Seq::Meta.3.gz
  835. lib/perl5/site_perl/man/man3/Bio::Seq::Meta::Array.3.gz
  836. lib/perl5/site_perl/man/man3/Bio::Seq::MetaI.3.gz
  837. lib/perl5/site_perl/man/man3/Bio::Seq::PrimaryQual.3.gz
  838. lib/perl5/site_perl/man/man3/Bio::Seq::PrimedSeq.3.gz
  839. lib/perl5/site_perl/man/man3/Bio::Seq::QualI.3.gz
  840. lib/perl5/site_perl/man/man3/Bio::Seq::Quality.3.gz
  841. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeq.3.gz
  842. lib/perl5/site_perl/man/man3/Bio::Seq::RichSeqI.3.gz
  843. lib/perl5/site_perl/man/man3/Bio::Seq::SeqBuilder.3.gz
  844. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFactory.3.gz
  845. lib/perl5/site_perl/man/man3/Bio::Seq::SeqFastaSpeedFactory.3.gz
  846. lib/perl5/site_perl/man/man3/Bio::Seq::SequenceTrace.3.gz
  847. lib/perl5/site_perl/man/man3/Bio::Seq::SimulatedRead.3.gz
  848. lib/perl5/site_perl/man/man3/Bio::Seq::TraceI.3.gz
  849. lib/perl5/site_perl/man/man3/Bio::SeqAnalysisParserI.3.gz
  850. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Amplicon.3.gz
  851. lib/perl5/site_perl/man/man3/Bio::SeqFeature::AnnotationAdaptor.3.gz
  852. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Collection.3.gz
  853. lib/perl5/site_perl/man/man3/Bio::SeqFeature::CollectionI.3.gz
  854. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Computation.3.gz
  855. lib/perl5/site_perl/man/man3/Bio::SeqFeature::FeaturePair.3.gz
  856. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Exon.3.gz
  857. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::ExonI.3.gz
  858. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructure.3.gz
  859. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::GeneStructureI.3.gz
  860. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Intron.3.gz
  861. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::NC_Feature.3.gz
  862. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3.gz
  863. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Promoter.3.gz
  864. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::Transcript.3.gz
  865. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::TranscriptI.3.gz
  866. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Gene::UTR.3.gz
  867. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Generic.3.gz
  868. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Lite.3.gz
  869. lib/perl5/site_perl/man/man3/Bio::SeqFeature::PositionProxy.3.gz
  870. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Primer.3.gz
  871. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Similarity.3.gz
  872. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SimilarityPair.3.gz
  873. lib/perl5/site_perl/man/man3/Bio::SeqFeature::SubSeq.3.gz
  874. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::FeatureNamer.3.gz
  875. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::IDHandler.3.gz
  876. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::TypeMapper.3.gz
  877. lib/perl5/site_perl/man/man3/Bio::SeqFeature::Tools::Unflattener.3.gz
  878. lib/perl5/site_perl/man/man3/Bio::SeqFeature::TypedSeqFeatureI.3.gz
  879. lib/perl5/site_perl/man/man3/Bio::SeqFeatureI.3.gz
  880. lib/perl5/site_perl/man/man3/Bio::SeqI.3.gz
  881. lib/perl5/site_perl/man/man3/Bio::SeqIO.3.gz
  882. lib/perl5/site_perl/man/man3/Bio::SeqIO::FTHelper.3.gz
  883. lib/perl5/site_perl/man/man3/Bio::SeqIO::Handler::GenericRichSeqHandler.3.gz
  884. lib/perl5/site_perl/man/man3/Bio::SeqIO::MultiFile.3.gz
  885. lib/perl5/site_perl/man/man3/Bio::SeqIO::ace.3.gz
  886. lib/perl5/site_perl/man/man3/Bio::SeqIO::asciitree.3.gz
  887. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml.3.gz
  888. lib/perl5/site_perl/man/man3/Bio::SeqIO::bsml_sax.3.gz
  889. lib/perl5/site_perl/man/man3/Bio::SeqIO::embl.3.gz
  890. lib/perl5/site_perl/man/man3/Bio::SeqIO::embldriver.3.gz
  891. lib/perl5/site_perl/man/man3/Bio::SeqIO::fasta.3.gz
  892. lib/perl5/site_perl/man/man3/Bio::SeqIO::fastq.3.gz
  893. lib/perl5/site_perl/man/man3/Bio::SeqIO::game.3.gz
  894. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::featHandler.3.gz
  895. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameHandler.3.gz
  896. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameSubs.3.gz
  897. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::gameWriter.3.gz
  898. lib/perl5/site_perl/man/man3/Bio::SeqIO::game::seqHandler.3.gz
  899. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbdriver.3.gz
  900. lib/perl5/site_perl/man/man3/Bio::SeqIO::gbxml.3.gz
  901. lib/perl5/site_perl/man/man3/Bio::SeqIO::gcg.3.gz
  902. lib/perl5/site_perl/man/man3/Bio::SeqIO::genbank.3.gz
  903. lib/perl5/site_perl/man/man3/Bio::SeqIO::interpro.3.gz
  904. lib/perl5/site_perl/man/man3/Bio::SeqIO::kegg.3.gz
  905. lib/perl5/site_perl/man/man3/Bio::SeqIO::largefasta.3.gz
  906. lib/perl5/site_perl/man/man3/Bio::SeqIO::locuslink.3.gz
  907. lib/perl5/site_perl/man/man3/Bio::SeqIO::mbsout.3.gz
  908. lib/perl5/site_perl/man/man3/Bio::SeqIO::metafasta.3.gz
  909. lib/perl5/site_perl/man/man3/Bio::SeqIO::msout.3.gz
  910. lib/perl5/site_perl/man/man3/Bio::SeqIO::phd.3.gz
  911. lib/perl5/site_perl/man/man3/Bio::SeqIO::pir.3.gz
  912. lib/perl5/site_perl/man/man3/Bio::SeqIO::qual.3.gz
  913. lib/perl5/site_perl/man/man3/Bio::SeqIO::raw.3.gz
  914. lib/perl5/site_perl/man/man3/Bio::SeqIO::scf.3.gz
  915. lib/perl5/site_perl/man/man3/Bio::SeqIO::seqxml.3.gz
  916. lib/perl5/site_perl/man/man3/Bio::SeqIO::swiss.3.gz
  917. lib/perl5/site_perl/man/man3/Bio::SeqIO::swissdriver.3.gz
  918. lib/perl5/site_perl/man/man3/Bio::SeqIO::tab.3.gz
  919. lib/perl5/site_perl/man/man3/Bio::SeqIO::table.3.gz
  920. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigr.3.gz
  921. lib/perl5/site_perl/man/man3/Bio::SeqIO::tigrxml.3.gz
  922. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq.3.gz
  923. lib/perl5/site_perl/man/man3/Bio::SeqIO::tinyseq::tinyseqHandler.3.gz
  924. lib/perl5/site_perl/man/man3/Bio::SeqUtils.3.gz
  925. lib/perl5/site_perl/man/man3/Bio::SimpleAlign.3.gz
  926. lib/perl5/site_perl/man/man3/Bio::SimpleAnalysisI.3.gz
  927. lib/perl5/site_perl/man/man3/Bio::Species.3.gz
  928. lib/perl5/site_perl/man/man3/Bio::Taxon.3.gz
  929. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Consed.3.gz
  930. lib/perl5/site_perl/man/man3/Bio::Tools::Alignment::Trim.3.gz
  931. lib/perl5/site_perl/man/man3/Bio::Tools::AmpliconSearch.3.gz
  932. lib/perl5/site_perl/man/man3/Bio::Tools::Analysis::SimpleAnalysisBase.3.gz
  933. lib/perl5/site_perl/man/man3/Bio::Tools::AnalysisResult.3.gz
  934. lib/perl5/site_perl/man/man3/Bio::Tools::Blat.3.gz
  935. lib/perl5/site_perl/man/man3/Bio::Tools::CodonTable.3.gz
  936. lib/perl5/site_perl/man/man3/Bio::Tools::Coil.3.gz
  937. lib/perl5/site_perl/man/man3/Bio::Tools::ECnumber.3.gz
  938. lib/perl5/site_perl/man/man3/Bio::Tools::EMBOSS::Palindrome.3.gz
  939. lib/perl5/site_perl/man/man3/Bio::Tools::EPCR.3.gz
  940. lib/perl5/site_perl/man/man3/Bio::Tools::ESTScan.3.gz
  941. lib/perl5/site_perl/man/man3/Bio::Tools::Eponine.3.gz
  942. lib/perl5/site_perl/man/man3/Bio::Tools::Est2Genome.3.gz
  943. lib/perl5/site_perl/man/man3/Bio::Tools::Fgenesh.3.gz
  944. lib/perl5/site_perl/man/man3/Bio::Tools::FootPrinter.3.gz
  945. lib/perl5/site_perl/man/man3/Bio::Tools::GFF.3.gz
  946. lib/perl5/site_perl/man/man3/Bio::Tools::Geneid.3.gz
  947. lib/perl5/site_perl/man/man3/Bio::Tools::Genemark.3.gz
  948. lib/perl5/site_perl/man/man3/Bio::Tools::Genewise.3.gz
  949. lib/perl5/site_perl/man/man3/Bio::Tools::Genomewise.3.gz
  950. lib/perl5/site_perl/man/man3/Bio::Tools::Genscan.3.gz
  951. lib/perl5/site_perl/man/man3/Bio::Tools::Glimmer.3.gz
  952. lib/perl5/site_perl/man/man3/Bio::Tools::Grail.3.gz
  953. lib/perl5/site_perl/man/man3/Bio::Tools::GuessSeqFormat.3.gz
  954. lib/perl5/site_perl/man/man3/Bio::Tools::IUPAC.3.gz
  955. lib/perl5/site_perl/man/man3/Bio::Tools::Lucy.3.gz
  956. lib/perl5/site_perl/man/man3/Bio::Tools::MZEF.3.gz
  957. lib/perl5/site_perl/man/man3/Bio::Tools::Match.3.gz
  958. lib/perl5/site_perl/man/man3/Bio::Tools::OddCodes.3.gz
  959. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Gerp.3.gz
  960. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy.3.gz
  961. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Molphy::Result.3.gz
  962. lib/perl5/site_perl/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
  963. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Exon.3.gz
  964. lib/perl5/site_perl/man/man3/Bio::Tools::Prediction::Gene.3.gz
  965. lib/perl5/site_perl/man/man3/Bio::Tools::Primer3.3.gz
  966. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Assessor::Base.3.gz
  967. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::AssessorI.3.gz
  968. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Feature.3.gz
  969. lib/perl5/site_perl/man/man3/Bio::Tools::Primer::Pair.3.gz
  970. lib/perl5/site_perl/man/man3/Bio::Tools::Prints.3.gz
  971. lib/perl5/site_perl/man/man3/Bio::Tools::Profile.3.gz
  972. lib/perl5/site_perl/man/man3/Bio::Tools::Promoterwise.3.gz
  973. lib/perl5/site_perl/man/man3/Bio::Tools::PrositeScan.3.gz
  974. lib/perl5/site_perl/man/man3/Bio::Tools::Pseudowise.3.gz
  975. lib/perl5/site_perl/man/man3/Bio::Tools::QRNA.3.gz
  976. lib/perl5/site_perl/man/man3/Bio::Tools::RandomDistFunctions.3.gz
  977. lib/perl5/site_perl/man/man3/Bio::Tools::RepeatMasker.3.gz
  978. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Analysis.3.gz
  979. lib/perl5/site_perl/man/man3/Bio::Tools::Run::AnalysisFactory.3.gz
  980. lib/perl5/site_perl/man/man3/Bio::Tools::Run::GenericParameters.3.gz
  981. lib/perl5/site_perl/man/man3/Bio::Tools::Run::ParametersI.3.gz
  982. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3.gz
  983. lib/perl5/site_perl/man/man3/Bio::Tools::Run::WrapperBase.3.gz
  984. lib/perl5/site_perl/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3.gz
  985. lib/perl5/site_perl/man/man3/Bio::Tools::Seg.3.gz
  986. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern.3.gz
  987. lib/perl5/site_perl/man/man3/Bio::Tools::SeqPattern::Backtranslate.3.gz
  988. lib/perl5/site_perl/man/man3/Bio::Tools::SeqStats.3.gz
  989. lib/perl5/site_perl/man/man3/Bio::Tools::SeqWords.3.gz
  990. lib/perl5/site_perl/man/man3/Bio::Tools::Sigcleave.3.gz
  991. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp.3.gz
  992. lib/perl5/site_perl/man/man3/Bio::Tools::Signalp::ExtendedSignalp.3.gz
  993. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Exon.3.gz
  994. lib/perl5/site_perl/man/man3/Bio::Tools::Sim4::Results.3.gz
  995. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Exon.3.gz
  996. lib/perl5/site_perl/man/man3/Bio::Tools::Spidey::Results.3.gz
  997. lib/perl5/site_perl/man/man3/Bio::Tools::TandemRepeatsFinder.3.gz
  998. lib/perl5/site_perl/man/man3/Bio::Tools::TargetP.3.gz
  999. lib/perl5/site_perl/man/man3/Bio::Tools::Tmhmm.3.gz
  1000. lib/perl5/site_perl/man/man3/Bio::Tools::ipcress.3.gz
  1001. lib/perl5/site_perl/man/man3/Bio::Tools::isPcr.3.gz
  1002. lib/perl5/site_perl/man/man3/Bio::Tools::pICalculator.3.gz
  1003. lib/perl5/site_perl/man/man3/Bio::Tools::tRNAscanSE.3.gz
  1004. lib/perl5/site_perl/man/man3/Bio::Tree::AnnotatableNode.3.gz
  1005. lib/perl5/site_perl/man/man3/Bio::Tree::Compatible.3.gz
  1006. lib/perl5/site_perl/man/man3/Bio::Tree::DistanceFactory.3.gz
  1007. lib/perl5/site_perl/man/man3/Bio::Tree::Node.3.gz
  1008. lib/perl5/site_perl/man/man3/Bio::Tree::NodeI.3.gz
  1009. lib/perl5/site_perl/man/man3/Bio::Tree::NodeNHX.3.gz
  1010. lib/perl5/site_perl/man/man3/Bio::Tree::RandomFactory.3.gz
  1011. lib/perl5/site_perl/man/man3/Bio::Tree::Statistics.3.gz
  1012. lib/perl5/site_perl/man/man3/Bio::Tree::Tree.3.gz
  1013. lib/perl5/site_perl/man/man3/Bio::Tree::TreeFunctionsI.3.gz
  1014. lib/perl5/site_perl/man/man3/Bio::Tree::TreeI.3.gz
  1015. lib/perl5/site_perl/man/man3/Bio::TreeIO.3.gz
  1016. lib/perl5/site_perl/man/man3/Bio::TreeIO::NewickParser.3.gz
  1017. lib/perl5/site_perl/man/man3/Bio::TreeIO::TreeEventBuilder.3.gz
  1018. lib/perl5/site_perl/man/man3/Bio::TreeIO::cluster.3.gz
  1019. lib/perl5/site_perl/man/man3/Bio::TreeIO::lintree.3.gz
  1020. lib/perl5/site_perl/man/man3/Bio::TreeIO::newick.3.gz
  1021. lib/perl5/site_perl/man/man3/Bio::TreeIO::nexus.3.gz
  1022. lib/perl5/site_perl/man/man3/Bio::TreeIO::nhx.3.gz
  1023. lib/perl5/site_perl/man/man3/Bio::TreeIO::pag.3.gz
  1024. lib/perl5/site_perl/man/man3/Bio::TreeIO::phyloxml.3.gz
  1025. lib/perl5/site_perl/man/man3/Bio::TreeIO::tabtree.3.gz
  1026. lib/perl5/site_perl/man/man3/Bio::UpdateableSeqI.3.gz
  1027. lib/perl5/site_perl/man/man3/Bio::WebAgent.3.gz
  1028. lib/perl5/site_perl/man/man3/BioPerl.3.gz
  1029. share/doc/BioPerl/AUTHORS
  1030. share/doc/BioPerl/Changes
  1031. share/doc/BioPerl/MANIFEST
  1032. share/doc/BioPerl/README.md
  1033. share/examples/BioPerl/Bio-DB-GFF/load_ucsc.pl
  1034. share/examples/BioPerl/align/FastAlign.pl
  1035. share/examples/BioPerl/align/align_on_codons.pl
  1036. share/examples/BioPerl/align/aligntutorial.pl
  1037. share/examples/BioPerl/align/simplealign.pl
  1038. share/examples/BioPerl/classify_hits_kingdom
  1039. share/examples/BioPerl/contributed/nmrpdb_parse.pl
  1040. share/examples/BioPerl/contributed/prosite2perl.pl
  1041. share/examples/BioPerl/contributed/rebase2list.pl
  1042. share/examples/BioPerl/db/est_tissue_query.pl
  1043. share/examples/BioPerl/db/get_seqs.pl
  1044. share/examples/BioPerl/db/rfetch.pl
  1045. share/examples/BioPerl/db/use_registry.pl
  1046. share/examples/BioPerl/generate_random_seq.pl
  1047. share/examples/BioPerl/longorf.pl
  1048. share/examples/BioPerl/make_primers.pl
  1049. share/examples/BioPerl/quality/svgtrace.pl
  1050. share/examples/BioPerl/rev_and_trans.pl
  1051. share/examples/BioPerl/revcom_dir.pl
  1052. share/examples/BioPerl/root/README
  1053. share/examples/BioPerl/root/exceptions1.pl
  1054. share/examples/BioPerl/root/exceptions2.pl
  1055. share/examples/BioPerl/root/exceptions3.pl
  1056. share/examples/BioPerl/root/exceptions4.pl
  1057. share/examples/BioPerl/searchio/blast_example.pl
  1058. share/examples/BioPerl/searchio/custom_writer.pl
  1059. share/examples/BioPerl/searchio/hitwriter.pl
  1060. share/examples/BioPerl/searchio/hspwriter.pl
  1061. share/examples/BioPerl/searchio/htmlwriter.pl
  1062. share/examples/BioPerl/searchio/psiblast_features.pl
  1063. share/examples/BioPerl/searchio/psiblast_iterations.pl
  1064. share/examples/BioPerl/searchio/rawwriter.pl
  1065. share/examples/BioPerl/searchio/resultwriter.pl
  1066. share/examples/BioPerl/searchio/waba2gff.pl
  1067. share/examples/BioPerl/searchio/waba2gff3.pl
  1068. share/examples/BioPerl/tk/gsequence.pl
  1069. share/examples/BioPerl/tk/hitdisplay.pl
  1070. share/examples/BioPerl/tools/extract_genes.pl
  1071. share/examples/BioPerl/tools/gb_to_gff.pl
  1072. share/examples/BioPerl/tools/gff2ps.pl
  1073. share/examples/BioPerl/tools/parse_codeml.pl
  1074. share/examples/BioPerl/tools/reverse-translate.pl
  1075. share/examples/BioPerl/tools/run_genscan.pl
  1076. share/examples/BioPerl/tools/run_primer3.pl
  1077. share/examples/BioPerl/tools/seq_pattern.pl
  1078. share/examples/BioPerl/tools/standaloneblast.pl
  1079. share/examples/BioPerl/tree/paup2phylip.pl
  1080. @owner
  1081. @group
  1082. @mode
Collapse this list.
Dependency lines:
  • p5-BioPerl>0:biology/p5-BioPerl
To install the port:
cd /usr/ports/biology/p5-BioPerl/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-BioPerl
  • pkg install p5-BioPerl
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-BioPerl
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
p5-BioPerl
ABIlatestquarterly
FreeBSD:11:aarch641.0070021.007007_1
FreeBSD:11:amd641.007007_11.007007_1
FreeBSD:11:armv6pkg-fallout1.007007_1
FreeBSD:11:i3861.007007_11.007007_1
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-fallout1.007007_1
FreeBSD:12:aarch641.0070021.007007_1
FreeBSD:12:amd641.007007_11.007007_1
FreeBSD:12:armv61.0070021.007007_1
FreeBSD:12:armv71.0070021.007007_1
FreeBSD:12:i3861.007007_11.007007_1
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-fallout1.007007_1
FreeBSD:12:powerpc64pkg-fallout1.007007_1
FreeBSD:13:aarch641.007007_11.007007_1
FreeBSD:13:amd641.007007_11.007007_1
FreeBSD:13:armv61.007007_11.007007_1
FreeBSD:13:armv71.007007_11.007007_1
FreeBSD:13:i3861.007007_11.007007_1
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips641.007007_11.007007_1
FreeBSD:13:powerpc641.007007_11.007007_1
FreeBSD:13:riscv64pkg-fallout1.007007_1
FreeBSD:14:aarch641.007007_1pkg-fallout
FreeBSD:14:amd641.007007_1pkg-fallout
FreeBSD:14:armv61.007007_1pkg-fallout
FreeBSD:14:armv71.007007_1pkg-fallout
FreeBSD:14:i3861.007007_1pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc641.007007_1pkg-fallout
FreeBSD:14:riscv641.007007_1pkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Data-Stag>=0 : devel/p5-Data-Stag
  2. p5-Error>=0 : lang/p5-Error
  3. p5-Graph>=0 : math/p5-Graph
  4. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  5. p5-IO-String>=0 : devel/p5-IO-String
  6. p5-IO-Stringy>=0 : devel/p5-IO-Stringy
  7. p5-IPC-Run>=0 : devel/p5-IPC-Run
  8. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  9. p5-Module-Build>=0 : devel/p5-Module-Build
  10. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  11. p5-Test-Most>=0 : devel/p5-Test-Most
  12. p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
  13. p5-URI>=0 : net/p5-URI
  14. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  15. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  16. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  17. p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
  18. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  19. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  20. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  21. p5-XML-Writer>=0 : textproc/p5-XML-Writer
  22. p5-YAML>=0 : textproc/p5-YAML
  23. p5-libwww>=0 : www/p5-libwww
  24. p5-libxml>=0 : textproc/p5-libxml
  25. perl5>=5.32.r0<5.33 : lang/perl5.32
  26. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Data-Stag>=0 : devel/p5-Data-Stag
  2. p5-Error>=0 : lang/p5-Error
  3. p5-Graph>=0 : math/p5-Graph
  4. p5-HTTP-Message>=0 : www/p5-HTTP-Message
  5. p5-IO-String>=0 : devel/p5-IO-String
  6. p5-IO-Stringy>=0 : devel/p5-IO-Stringy
  7. p5-IPC-Run>=0 : devel/p5-IPC-Run
  8. p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
  9. p5-Module-Build>=0 : devel/p5-Module-Build
  10. p5-Set-Scalar>=0 : devel/p5-Set-Scalar
  11. p5-Test-Most>=0 : devel/p5-Test-Most
  12. p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
  13. p5-URI>=0 : net/p5-URI
  14. p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
  15. p5-XML-DOM>=0 : textproc/p5-XML-DOM
  16. p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
  17. p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
  18. p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
  19. p5-XML-SAX>=0 : textproc/p5-XML-SAX
  20. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  21. p5-XML-Writer>=0 : textproc/p5-XML-Writer
  22. p5-YAML>=0 : textproc/p5-YAML
  23. p5-libwww>=0 : www/p5-libwww
  24. p5-libxml>=0 : textproc/p5-libxml
  25. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-Bio-Cluster
  3. biology/p5-Bio-Coordinate
  4. biology/p5-Bio-DB-EMBL
  5. biology/p5-Bio-DB-NCBIHelper
  6. biology/p5-Bio-Das
  7. biology/p5-Bio-FeatureIO
Expand this list (11 items / 4 hidden - sorry, this count includes any deleted ports)
  1. Collapse this list).
  2. biology/p5-Bio-Graphics
  3. biology/p5-Bio-Phylo
  4. biology/p5-Bio-Variation
  5. biology/p5-BioPerl-Run
  6. Collapse this list.
for Run
  1. biology/p5-Bio-ASN1-EntrezGene
  2. biology/p5-Bio-Cluster
  3. biology/p5-Bio-Coordinate
  4. biology/p5-Bio-DB-EMBL
  5. biology/p5-Bio-DB-NCBIHelper
  6. biology/p5-Bio-Das
  7. biology/p5-Bio-FeatureIO
Expand this list (11 items / 4 hidden - sorry, this count includes any deleted ports)
  1. Collapse this list).
  2. biology/p5-Bio-Graphics
  3. biology/p5-Bio-Phylo
  4. biology/p5-Bio-Variation
  5. biology/p5-BioPerl-Run
  6. Collapse this list.

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (13 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/BioPerl/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/C/CJ/CJFIELDS/
  7. http://backpan.perl.org/authors/id/C/CJ/CJFIELDS/
  8. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/C/CJ/CJFIELDS/
  10. https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/
  11. https://cpan.metacpan.org/modules/by-module/BioPerl/
  12. https://www.cpan.org/authors/id/C/CJ/CJFIELDS/
Collapse this list.
Port Moves
  • port moved here from biology/p5-bioperl on 2016-12-18
    REASON: Rename to match upstream naming

Number of commits found: 19

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.007007_1
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.007007_1
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.007007_1
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.007007_1
26 Jun 2020 11:55:23
Revision:540492Original commit files touched by this commit
sunpoet search for other commits by this committer
Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113

- Fix LICENSE_FILE
- Update pkg-descr
- Update WWW
- Bump PORTREVISION of dependent ports for dependency change

Changes:	https://metacpan.org/changes/distribution/IO-Stringy
1.007007
08 Dec 2019 16:57:24
Revision:519356Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007007 (1.7.7)

Changes:	https://metacpan.org/changes/distribution/BioPerl
1.007006
07 Sep 2019 22:44:02
Revision:511437Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007006 (1.7.6)

- Remove PGTEST and SQLITETEST options: DBD::Pg and DBD::SQLite have been
removed from BioPerl by upstream for the move of modules and programs into
separate distributions

Changes:	https://metacpan.org/changes/distribution/BioPerl
1.007005_1
11 Aug 2019 16:49:24
Revision:508637Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007005 (1.7.5)

- Fix DISTNAME
- Bump PORTREVISION for package change

Changes:	https://metacpan.org/changes/distribution/BioPerl
1.007005
11 Aug 2019 11:28:17
Revision:508608Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW
1.007005
22 Feb 2019 19:54:12
Revision:493589Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007005 (1.7.5)

Changes:	https://metacpan.org/changes/distribution/BioPerl
1.007004
20 Feb 2019 20:46:53
Revision:493447Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007004 (1.7.4)

- Add LICENSE_FILE
- Use USES=shebangfix
- Use COPYTREE_SHARE instead of CP -R
- Take maintainership

Changes:	https://metacpan.org/changes/distribution/BioPerl
1.007002
06 Oct 2018 13:06:45
Revision:481365Original commit files touched by this commit
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
1.007002
15 Sep 2017 08:58:50
Revision:449893Original commit files touched by this commit
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
1.007002
13 Sep 2017 01:45:35
Revision:449746Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.007002
Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes
1.007001_2
01 Jun 2017 23:50:33
Revision:442335Original commit files touched by this commit
sunpoet search for other commits by this committer
Remove outdated PERL_LEVEL check
1.007001_2
22 Apr 2017 12:45:43
Revision:439170Original commit files touched by this commit
miwi search for other commits by this committer
- Fix shebangs
1.007001_1
31 Jan 2017 16:21:46
Revision:432932Original commit files touched by this commit
mat search for other commits by this committer
Bump PORTREVISION for ports affected by the fix the last commit.

Done with:	Tools/scripts/bump-revision.sh
Sponsored by:	Absolight
1.007001
19 Dec 2016 15:54:29
Revision:428940Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.007001
- Update *_DEPENDS
- Use TEST_DEPENDS: Test::Most and URI::Escape are test-only dependencies
- Use PORTDATA, PORTDOCS and PORTEXAMPLES

Changes:	http://search.cpan.org/dist/BioPerl/Changes
1.6.924_5
18 Dec 2016 15:25:04
Revision:428868Original commit files touched by this commit
sunpoet search for other commits by this committer
- Move biology/p5-bioperl to biology/p5-BioPerl
- Sort *_DEPENDS
- Bump PORTREVISION for dependent ports

Number of commits found: 19