notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Ukraine
NOTE: There is a known problem on production with searching pkg-plist - it returns no results. This problem is not present on stage.freshports.org
Port details
p5-BioPerl-Run Wrapper modules for common bioinformatics tools
1.007003 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-12-18 15:29:01
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: ART10 GPLv1+
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (211 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/catalog.mk
  2. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/LICENSE
  3. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/ART10
  4. /usr/local/share/licenses/p5-BioPerl-Run-1.007003/GPLv1+
  5. bin/bp_multi_hmmsearch
  6. bin/bp_panalysis
  7. bin/bp_papplmaker
  8. bin/bp_run_neighbor
  9. bin/bp_run_protdist
  10. lib/perl5/site_perl/Bio/DB/ESoap.pm
  11. lib/perl5/site_perl/Bio/DB/ESoap/WSDL.pm
  12. lib/perl5/site_perl/Bio/DB/SoapEUtilities.pm
  13. lib/perl5/site_perl/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
  14. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor.pm
  15. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
  16. lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
  17. lib/perl5/site_perl/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
  18. lib/perl5/site_perl/Bio/DB/SoapEUtilities/LinkAdaptor.pm
  19. lib/perl5/site_perl/Bio/DB/SoapEUtilities/Result.pm
  20. lib/perl5/site_perl/Bio/Factory/EMBOSS.pm
  21. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Amap.pm
  22. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Blat.pm
  23. lib/perl5/site_perl/Bio/Tools/Run/Alignment/DBA.pm
  24. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Exonerate.pm
  25. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Gmap.pm
  26. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Kalign.pm
  27. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Lagan.pm
  28. lib/perl5/site_perl/Bio/Tools/Run/Alignment/MAFFT.pm
  29. lib/perl5/site_perl/Bio/Tools/Run/Alignment/MSAProbs.pm
  30. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Muscle.pm
  31. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Pal2Nal.pm
  32. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probalign.pm
  33. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probcons.pm
  34. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Proda.pm
  35. lib/perl5/site_perl/Bio/Tools/Run/Alignment/Sim4.pm
  36. lib/perl5/site_perl/Bio/Tools/Run/Alignment/StandAloneFasta.pm
  37. lib/perl5/site_perl/Bio/Tools/Run/Analysis/soap.pm
  38. lib/perl5/site_perl/Bio/Tools/Run/AnalysisFactory/soap.pm
  39. lib/perl5/site_perl/Bio/Tools/Run/BEDTools.pm
  40. lib/perl5/site_perl/Bio/Tools/Run/BEDTools/Config.pm
  41. lib/perl5/site_perl/Bio/Tools/Run/BlastPlus.pm
  42. lib/perl5/site_perl/Bio/Tools/Run/BlastPlus/Config.pm
  43. lib/perl5/site_perl/Bio/Tools/Run/Coil.pm
  44. lib/perl5/site_perl/Bio/Tools/Run/EMBOSSApplication.pm
  45. lib/perl5/site_perl/Bio/Tools/Run/EMBOSSacd.pm
  46. lib/perl5/site_perl/Bio/Tools/Run/ERPIN.pm
  47. lib/perl5/site_perl/Bio/Tools/Run/Ensembl.pm
  48. lib/perl5/site_perl/Bio/Tools/Run/Eponine.pm
  49. lib/perl5/site_perl/Bio/Tools/Run/FootPrinter.pm
  50. lib/perl5/site_perl/Bio/Tools/Run/Genemark.pm
  51. lib/perl5/site_perl/Bio/Tools/Run/Genewise.pm
  52. lib/perl5/site_perl/Bio/Tools/Run/Genscan.pm
  53. lib/perl5/site_perl/Bio/Tools/Run/Glimmer.pm
  54. lib/perl5/site_perl/Bio/Tools/Run/Hmmer.pm
  55. lib/perl5/site_perl/Bio/Tools/Run/Infernal.pm
  56. lib/perl5/site_perl/Bio/Tools/Run/MCS.pm
  57. lib/perl5/site_perl/Bio/Tools/Run/Match.pm
  58. lib/perl5/site_perl/Bio/Tools/Run/Mdust.pm
  59. lib/perl5/site_perl/Bio/Tools/Run/Phylo/FastTree.pm
  60. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Gerp.pm
  61. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Base.pm
  62. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm
  63. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
  64. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
  65. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/REL.pm
  66. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
  67. lib/perl5/site_perl/Bio/Tools/Run/Phylo/LVB.pm
  68. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
  69. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Njtree/Best.pm
  70. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
  71. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
  72. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Base.pm
  73. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Consense.pm
  74. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
  75. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
  76. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
  77. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
  78. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
  79. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
  80. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
  81. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phyml.pm
  82. lib/perl5/site_perl/Bio/Tools/Run/Phylo/QuickTree.pm
  83. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Raxml.pm
  84. lib/perl5/site_perl/Bio/Tools/Run/Phylo/SLR.pm
  85. lib/perl5/site_perl/Bio/Tools/Run/Phylo/Semphy.pm
  86. lib/perl5/site_perl/Bio/Tools/Run/Primate.pm
  87. lib/perl5/site_perl/Bio/Tools/Run/Primer3.pm
  88. lib/perl5/site_perl/Bio/Tools/Run/Prints.pm
  89. lib/perl5/site_perl/Bio/Tools/Run/Profile.pm
  90. lib/perl5/site_perl/Bio/Tools/Run/Promoterwise.pm
  91. lib/perl5/site_perl/Bio/Tools/Run/Pseudowise.pm
  92. lib/perl5/site_perl/Bio/Tools/Run/RNAMotif.pm
  93. lib/perl5/site_perl/Bio/Tools/Run/RepeatMasker.pm
  94. lib/perl5/site_perl/Bio/Tools/Run/Samtools.pm
  95. lib/perl5/site_perl/Bio/Tools/Run/Samtools/Config.pm
  96. lib/perl5/site_perl/Bio/Tools/Run/Seg.pm
  97. lib/perl5/site_perl/Bio/Tools/Run/Signalp.pm
  98. lib/perl5/site_perl/Bio/Tools/Run/Simprot.pm
  99. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlast.pm
  100. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus.pm
  101. lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
  102. lib/perl5/site_perl/Bio/Tools/Run/StandAloneNCBIBlast.pm
  103. lib/perl5/site_perl/Bio/Tools/Run/StandAloneWUBlast.pm
  104. lib/perl5/site_perl/Bio/Tools/Run/Tmhmm.pm
  105. lib/perl5/site_perl/Bio/Tools/Run/TribeMCL.pm
  106. lib/perl5/site_perl/Bio/Tools/Run/Vista.pm
  107. lib/perl5/site_perl/Bio/Tools/Run/tRNAscanSE.pm
  108. lib/perl5/site_perl/man/man3/Bio::DB::ESoap.3.gz
  109. lib/perl5/site_perl/man/man3/Bio::DB::ESoap::WSDL.3.gz
  110. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities.3.gz
  111. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3.gz
  112. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3.gz
  113. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3.gz
  114. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3.gz
  115. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3.gz
  116. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::LinkAdaptor.3.gz
  117. lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::Result.3.gz
  118. lib/perl5/site_perl/man/man3/Bio::Factory::EMBOSS.3.gz
  119. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Amap.3.gz
  120. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Blat.3.gz
  121. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::DBA.3.gz
  122. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Exonerate.3.gz
  123. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Gmap.3.gz
  124. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Kalign.3.gz
  125. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Lagan.3.gz
  126. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MAFFT.3.gz
  127. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MSAProbs.3.gz
  128. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Muscle.3.gz
  129. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3.gz
  130. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probalign.3.gz
  131. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probcons.3.gz
  132. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Proda.3.gz
  133. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Sim4.3.gz
  134. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3.gz
  135. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Analysis::soap.3.gz
  136. lib/perl5/site_perl/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3.gz
  137. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools.3.gz
  138. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools::Config.3.gz
  139. lib/perl5/site_perl/man/man3/Bio::Tools::Run::BlastPlus.3.gz
  140. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Coil.3.gz
  141. lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSApplication.3.gz
  142. lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSacd.3.gz
  143. lib/perl5/site_perl/man/man3/Bio::Tools::Run::ERPIN.3.gz
  144. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Ensembl.3.gz
  145. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Eponine.3.gz
  146. lib/perl5/site_perl/man/man3/Bio::Tools::Run::FootPrinter.3.gz
  147. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genemark.3.gz
  148. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genewise.3.gz
  149. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genscan.3.gz
  150. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Glimmer.3.gz
  151. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Hmmer.3.gz
  152. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Infernal.3.gz
  153. lib/perl5/site_perl/man/man3/Bio::Tools::Run::MCS.3.gz
  154. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Match.3.gz
  155. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Mdust.3.gz
  156. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::FastTree.3.gz
  157. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Gerp.3.gz
  158. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3.gz
  159. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3.gz
  160. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3.gz
  161. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3.gz
  162. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3.gz
  163. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3.gz
  164. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::LVB.3.gz
  165. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3.gz
  166. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3.gz
  167. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3.gz
  168. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3.gz
  169. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3.gz
  170. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3.gz
  171. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3.gz
  172. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3.gz
  173. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3.gz
  174. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3.gz
  175. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3.gz
  176. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3.gz
  177. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3.gz
  178. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phyml.3.gz
  179. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::QuickTree.3.gz
  180. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Raxml.3.gz
  181. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::SLR.3.gz
  182. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Semphy.3.gz
  183. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primate.3.gz
  184. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primer3.3.gz
  185. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Prints.3.gz
  186. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Profile.3.gz
  187. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Promoterwise.3.gz
  188. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Pseudowise.3.gz
  189. lib/perl5/site_perl/man/man3/Bio::Tools::Run::RNAMotif.3.gz
  190. lib/perl5/site_perl/man/man3/Bio::Tools::Run::RepeatMasker.3.gz
  191. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools.3.gz
  192. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools::Config.3.gz
  193. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Seg.3.gz
  194. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Signalp.3.gz
  195. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Simprot.3.gz
  196. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlast.3.gz
  197. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3.gz
  198. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3.gz
  199. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneNCBIBlast.3.gz
  200. lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneWUBlast.3.gz
  201. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Tmhmm.3.gz
  202. lib/perl5/site_perl/man/man3/Bio::Tools::Run::TribeMCL.3.gz
  203. lib/perl5/site_perl/man/man3/Bio::Tools::Run::Vista.3.gz
  204. lib/perl5/site_perl/man/man3/Bio::Tools::Run::tRNAscanSE.3.gz
  205. share/doc/BioPerl-Run/AUTHORS
  206. share/doc/BioPerl-Run/Changes
  207. share/doc/BioPerl-Run/INSTALL.PROGRAMS
  208. share/doc/BioPerl-Run/README.md
  209. @owner
  210. @group
  211. @mode
Collapse this list.
Dependency lines:
  • p5-BioPerl-Run>0:biology/p5-BioPerl-Run
To install the port:
cd /usr/ports/biology/p5-BioPerl-Run/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-BioPerl-Run
  • pkg install p5-BioPerl-Run
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-BioPerl-Run
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
p5-BioPerl-Run
ABIlatestquarterly
FreeBSD:11:aarch641.0070021.007003
FreeBSD:11:amd641.0070031.007003
FreeBSD:11:armv6pkg-fallout1.007003
FreeBSD:11:i3861.0070031.007003
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-fallout1.007003
FreeBSD:12:aarch641.0070021.007003
FreeBSD:12:amd641.0070031.007003
FreeBSD:12:armv61.0070021.007003
FreeBSD:12:armv71.0070021.007003
FreeBSD:12:i3861.0070031.007003
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-fallout1.007003
FreeBSD:12:powerpc64pkg-fallout1.007003
FreeBSD:13:aarch641.0070031.007003
FreeBSD:13:amd641.0070031.007003
FreeBSD:13:armv61.0070031.007003
FreeBSD:13:armv71.0070031.007003
FreeBSD:13:i3861.0070031.007003
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips641.0070031.007003
FreeBSD:13:powerpc641.0070031.007003
FreeBSD:13:riscv64pkg-fallout1.007003
FreeBSD:14:aarch641.007003pkg-fallout
FreeBSD:14:amd641.007003pkg-fallout
FreeBSD:14:armv61.007003pkg-fallout
FreeBSD:14:armv71.007003pkg-fallout
FreeBSD:14:i3861.007003pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc641.007003pkg-fallout
FreeBSD:14:riscv641.007003pkg-fallout
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
  2. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  3. p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
  4. p5-BioPerl>=1.007000 : biology/p5-BioPerl
  5. p5-Config-Any>=0 : devel/p5-Config-Any
  6. p5-File-Sort>=0 : misc/p5-File-Sort
  7. p5-IO-String>=0 : devel/p5-IO-String
  8. p5-IPC-Run>=0 : devel/p5-IPC-Run
  9. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  10. perl5>=5.32.r0<5.33 : lang/perl5.32
  11. p5-Module-Build>=0.4206 : devel/p5-Module-Build
  12. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
  2. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  3. p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
  4. p5-BioPerl>=1.007000 : biology/p5-BioPerl
  5. p5-Config-Any>=0 : devel/p5-Config-Any
  6. p5-File-Sort>=0 : misc/p5-File-Sort
  7. p5-IO-String>=0 : devel/p5-IO-String
  8. p5-IPC-Run>=0 : devel/p5-IPC-Run
  9. p5-XML-Twig>=0 : textproc/p5-XML-Twig
  10. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message

Master Sites:
Expand this list (13 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  2. ftp://ftp.cpan.org/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/BioPerl/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/authors/id/C/CJ/CJFIELDS/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/authors/id/C/CJ/CJFIELDS/
  7. http://backpan.perl.org/authors/id/C/CJ/CJFIELDS/
  8. http://ftp.jaist.ac.jp/pub/CPAN/authors/id/C/CJ/CJFIELDS/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/authors/id/C/CJ/CJFIELDS/
  10. https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/
  11. https://cpan.metacpan.org/modules/by-module/BioPerl/
  12. https://www.cpan.org/authors/id/C/CJ/CJFIELDS/
Collapse this list.
Port Moves

Number of commits found: 13

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.007003
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.007003
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.007003
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.007003
08 Jan 2020 18:36:40
Revision:522441Original commit files touched by this commit
sunpoet search for other commits by this committer
Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over 3
years ago
1.007003
20 Feb 2019 20:46:59
Revision:493448Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007003

- Take maintainership

Changes:	https://metacpan.org/changes/distribution/BioPerl-Run
1.007002
06 Oct 2018 13:06:45
Revision:481365Original commit files touched by this commit
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
1.007002
15 Sep 2017 19:17:44
Revision:449927Original commit files touched by this commit
sunpoet search for other commits by this committer
Update to 1.007002

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
1.007001_1
15 Sep 2017 08:58:50
Revision:449893Original commit files touched by this commit
mat search for other commits by this committer
Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight
1.007001_1
31 Jan 2017 16:21:46
Revision:432932Original commit files touched by this commit
mat search for other commits by this committer
Bump PORTREVISION for ports affected by the fix the last commit.

Done with:	Tools/scripts/bump-revision.sh
Sponsored by:	Absolight
1.007001
20 Dec 2016 18:35:26
Revision:429017Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.007001

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
1.007000
19 Dec 2016 15:54:34
Revision:428941Original commit files touched by this commit
sunpoet search for other commits by this committer
- Update to 1.007000
- Change MASTER_SITES back to CPAN
- Update LICENSE
- Add LICENSE_FILE
- Use PORTDOCS
- Convert to options target helper
- Use INSTALL_SCRIPT
- Pet portlint: fix diff header of patch file

Changes:	http://search.cpan.org/dist/BioPerl-Run/Changes
1.6.901_2
18 Dec 2016 15:25:44
Revision:428872Original commit files touched by this commit
sunpoet search for other commits by this committer
- Move biology/p5-bioperl-run to biology/p5-BioPerl-Run
- Sort *_DEPENDS
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming

Number of commits found: 13