| Port details |
- mapm3 Constructs linkage maps of markers segregating in experimental crosses
- 3.0_1 biology
 =0      3.0_1Version of this port present on the latest quarterly branch. - Maintainer: tphilipp@potion-studios.com
- Port Added: 2008-04-06 04:49:23
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- License: MAPMAKER
- WWW:
- http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
- Description:
- MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.
MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/mapm3/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/mapm3
- pkg install mapm3
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: mapm3
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (mapm3-source.tar.Z) = 107c8d0e7e89e2fe43fe17233d38c22161def851c8094435f3440a39c0cdca4c
SIZE (mapm3-source.tar.Z) = 1321227
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_mapm3
- USES:
- ncurses tar:Z
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
3.0_1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
3.0_1
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
3.0_1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
3.0_1
04 Sep 2020 12:24:23
 |
fernape |
biology/mapm3: Reformat patches.
Make them compliant with the expected format. |
3.0_1
04 Sep 2020 11:28:24
|
fernape |
biology/mapm3: Fix build with llvm11, gcc10
Another instance of -fno-common issue.
While here:
* strip executables
* add license
PR: 249077
Submitted by: tphilipp@potion-studios.com (maintainer)
MFH: 2020Q3 (build fix, -fno-common) |
3.0
19 May 2016 10:21:25
|
amdmi3 |
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
Approved by: portmgr blanket |
3.0
01 Feb 2016 22:09:10
|
marino |
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS
Also link with libncurses, not libtermcap
approved by: infrastructure blanket |
3.0
12 Jan 2014 19:07:28
|
riggs |
- Fix build with clang
- Stage support
PR: ports/185655
Submitted by: Tassilo Philipp <tphilipp@potion-studios.com> (maintainer)
Approved by: thierry (mentor) |
3.0
20 Sep 2013 15:55:44
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
3.0
19 Mar 2011 12:38:54
|
miwi |
- Get Rid MD5 support |
3.0
20 Nov 2009 22:53:09
|
pav |
- Mark MAKE_JOBS_UNSAFE
Reported by: pointyhat |
3.0
06 Apr 2008 04:49:06
|
rafan |
MAPMAKER/EXP is a linkage analysis package designed to help construct primary
linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
performs full multipoint linkage analysis (simultaneous estimation of all
recombination fractions from the primary data) for dominant, recessive, and co-
dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only
successor to the original MAPMAKER program.
MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
genes controlling polygenic quantitative traits in F2 intercrosses and BC1
backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
can be found in the technical report (included with MAPMAKER/QTL).
WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
PR: ports/122452
Submitted by: Tassilo Philipp <tphilipp at potion-studios.com> |
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