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non port: biology/hmmer/Makefile
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Number of commits found: 35

Tue, 27 Jun 2023
[ 19:34 Rene Ladan (rene) search for other commits by this committer ]    commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  3d9a815  (Only the first 10 of 4481 ports in this commit are shown above. View all ports for this commit)
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
Tue, 11 Oct 2022
[ 20:13 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:b532c5dd966eb638a5616fc7819657f007c08848  commit hash:b532c5dd966eb638a5616fc7819657f007c08848  commit hash:b532c5dd966eb638a5616fc7819657f007c08848  b532c5d 
biology/hmmer: Update to 3.3.2

No release notes.  See commits for changes:
https://github.com/EddyRivasLab/hmmer

PR:             266968
Reported by:    mzaki@e-mail.ne.jp
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 20 Jul 2022
[ 14:20 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  37526bb  (Only the first 10 of 82 ports in this commit are shown above. View all ports for this commit)
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Wed, 10 Mar 2021
[ 16:09 pkubaj search for other commits by this committer ] Original commit   Revision:568013
biology/hmmer: disable on powerpc64le and powerpcspe

Altivec/VSX code in this port works only on big-endian POWER.
powerpcspe has neither SSE2 nor Altivec.
Thu, 24 Sep 2020
[ 20:29 linimon search for other commits by this committer ] Original commit   Revision:549947
Also enable on powerpc64le.

Approved by:	portmgr (tier-2 blanket)
Wed, 29 Jan 2020
[ 05:55 fernape search for other commits by this committer ] Original commit   Revision:524533
biology/hmmer: update to 3.3

PR:	243244
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Mon, 18 Feb 2019
[ 01:30 linimon search for other commits by this committer ] Original commit   Revision:493230
vec_splats function is not supported by base GCC.  Add USES=compiler:c11
to fix build on powerpc platforms.

PR:		235514
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)
Wed, 11 Jul 2018
[ 15:15 swills search for other commits by this committer ] Original commit   Revision:474455
biology/hmmer: update to 3.2.1

PR:		229693
Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp> (maintainer)
Mon, 18 Dec 2017
[ 04:28 linimon search for other commits by this committer ] Original commit   Revision:456588
Back out previous commits by jbeich demand.
[ 02:41 linimon search for other commits by this committer ] Original commit   Revision:456579
Bah.  Remove spare line from cut-and-paste.
[ 02:32 linimon search for other commits by this committer ] Original commit   Revision:456578
Attempt to fix build on non-x86 archs.  Untested, but does no harm
on x86.

Approved by:	portmgr (tier-2 blanket)
Sat, 11 Nov 2017
[ 12:51 wen search for other commits by this committer ] Original commit   Revision:453972
- Update to 3.1b2
- Pass maintainership to submitter

PR:		223561
Submitted by:	mzaki@niid.go.jp
Approved by:	bacon4000@gmail.com(previous maintainer)
Fri, 13 Oct 2017
[ 11:14 bapt search for other commits by this committer ] Original commit   Revision:451981
Remove dead master sites
Sun, 25 Jun 2017
[ 00:29 linimon search for other commits by this committer ] Original commit   Revision:444251 (Only the first 10 of 81 ports in this commit are shown above. View all ports for this commit)
Begin deorbit burn of ia64.  We have not attempted to build packages for
it for many years.

While here, alphabetize ARCHs, pet portlint, and modernize usages.

Approved by:	portmgr (tier-2 blanket)
Fri, 11 Dec 2015
[ 08:48 miwi search for other commits by this committer ] Original commit   Revision:403506 (Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Thu, 2 Apr 2015
[ 15:41 amdmi3 search for other commits by this committer ] Original commit   Revision:383013
- Remove deprecated option
- Tweak compiler flags
- Add LICENSE
- Pass maintainership to submitter

PR:		199066
Submitted by:	jwbacon@tds.net
Tue, 15 Jul 2014
[ 14:54 adamw search for other commits by this committer ] Original commit   Revision:361934
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.

While here, use OPTIONS helpers and re-enable manpage installation.
Mon, 30 Dec 2013
[ 18:08 antoine search for other commits by this committer ] Original commit   Revision:338155
Stage support
Fri, 20 Sep 2013
[ 15:55 bapt search for other commits by this committer ] Original commit   Revision:327709 (Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 3 Aug 2013
[ 08:45 az search for other commits by this committer ] Original commit   Revision:324181 (Only the first 10 of 140 ports in this commit are shown above. View all ports for this commit)
- Convert to new perl framework
- Trim Makefile header
Sat, 20 Jul 2013
[ 15:08 wen search for other commits by this committer ] Original commit   Revision:323349
- Update to 3.0
- Convert to optionsNG
- Drop maintainership
Mon, 1 Oct 2012
[ 14:55 wen search for other commits by this committer ] Original commit   Revision:305131
- Take maintainership
[ 14:45 tabthorpe search for other commits by this committer ] Original commit   Revision:305130 (Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
- Reassign to the heap at maintainer's request
Sun, 1 Feb 2009
[ 08:17 pgollucci search for other commits by this committer ] Original commit 
- Update download locations, update WWW

Reported by:    -fetch-original pointyhat run
Thu, 25 Nov 2004
[ 22:58 sem search for other commits by this committer ] Original commit 
- Remove a junk white space.
[ 22:35 sem search for other commits by this committer ] Original commit 
- Update to 2.3.2
- Add WITH_PVM knob
- Pass maintainership to submitter

PR:             ports/74331
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
Sat, 20 Nov 2004
[ 08:09 linimon search for other commits by this committer ] Original commit  (Only the first 10 of 33 ports in this commit are shown above. View all ports for this commit)
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Fri, 7 Mar 2003
[ 05:56 ade search for other commits by this committer ] Original commit  (Only the first 10 of 28 ports in this commit are shown above. View all ports for this commit)
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Thu, 11 Jul 2002
[ 10:52 wjv search for other commits by this committer ] Original commit 
- Add patch that will, for -CURRENT only, change:  -pthread -> -lc_r
- Bump $PORTREVISION

Prompted by:    Various questions from Rune Linding <linding@EMBL-Heidelberg.DE>
Wed, 22 Aug 2001
[ 14:18 wjv search for other commits by this committer ] Original commit 
- Update port to version 2.2g    
Thu, 5 Jul 2001
[ 09:58 wjv search for other commits by this committer ] Original commit 
- General clean-up of port.   - Install PDF and HTML documentation.   - Take
over maintainership.    
Wed, 4 Jul 2001
[ 13:16 wjv search for other commits by this committer ] Original commit 
- Add %%PORTDOCS%% support to pkg-plist.   - $INSTALL_MAN -> $INSTALL_DATA in
Makefile where appropriate.    

Number of commits found: 35