| non port: biology/hmmer/Makefile |
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SVNWeb
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Number of commits found: 35 |
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Tue, 27 Jun 2023
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[ 19:34 Rene Ladan (rene)  ]    3d9a815 (Only the first 10 of 4481 ports in this commit are shown above.  )
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>
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Tue, 11 Oct 2022
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[ 20:13 Jason W. Bacon (jwb) ] b532c5d
biology/hmmer: Update to 3.3.2
No release notes. See commits for changes:
https://github.com/EddyRivasLab/hmmer
PR: 266968
Reported by: mzaki@e-mail.ne.jp
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Wed, 10 Mar 2021
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[ 16:09 pkubaj ]  
biology/hmmer: disable on powerpc64le and powerpcspe
Altivec/VSX code in this port works only on big-endian POWER.
powerpcspe has neither SSE2 nor Altivec.
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Thu, 24 Sep 2020
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[ 20:29 linimon ]
Also enable on powerpc64le.
Approved by: portmgr (tier-2 blanket)
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Wed, 29 Jan 2020
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[ 05:55 fernape ]
biology/hmmer: update to 3.3
PR: 243244
Submitted by: mzaki@e-mail.ne.jp (maintainer)
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Mon, 18 Feb 2019
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[ 01:30 linimon ]
vec_splats function is not supported by base GCC. Add USES=compiler:c11
to fix build on powerpc platforms.
PR: 235514
Submitted by: Piotr Kubaj
Approved by: portmgr (tier-2 blanket)
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Wed, 11 Jul 2018
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[ 15:15 swills ]
biology/hmmer: update to 3.2.1
PR: 229693
Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp> (maintainer)
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Mon, 18 Dec 2017
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[ 04:28 linimon ]
Back out previous commits by jbeich demand.
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[ 02:41 linimon ]
Bah. Remove spare line from cut-and-paste.
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[ 02:32 linimon ]
Attempt to fix build on non-x86 archs. Untested, but does no harm
on x86.
Approved by: portmgr (tier-2 blanket)
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Sat, 11 Nov 2017
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[ 12:51 wen ]
- Update to 3.1b2
- Pass maintainership to submitter
PR: 223561
Submitted by: mzaki@niid.go.jp
Approved by: bacon4000@gmail.com(previous maintainer)
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Fri, 13 Oct 2017
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[ 11:14 bapt ]
Remove dead master sites
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Sun, 25 Jun 2017
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[ 00:29 linimon ] (Only the first 10 of 81 ports in this commit are shown above. )
Begin deorbit burn of ia64. We have not attempted to build packages for
it for many years.
While here, alphabetize ARCHs, pet portlint, and modernize usages.
Approved by: portmgr (tier-2 blanket)
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Fri, 11 Dec 2015
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[ 08:48 miwi ] (Only the first 10 of 54 ports in this commit are shown above. )
- Update maintainer mail address
- Update/Remove MASTER_SITE
PR: 204755
Submitted by: jwbacon@tds.net (maintainer)
Approved by: mat (mentor)
Differential Revision: D4493
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Thu, 2 Apr 2015
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[ 15:41 amdmi3 ]
- Remove deprecated option
- Tweak compiler flags
- Add LICENSE
- Pass maintainership to submitter
PR: 199066
Submitted by: jwbacon@tds.net
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Tue, 15 Jul 2014
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[ 14:54 adamw ]
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
While here, use OPTIONS helpers and re-enable manpage installation.
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Mon, 30 Dec 2013
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[ 18:08 antoine ]
Stage support
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Fri, 20 Sep 2013
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[ 15:55 bapt ] (Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Sat, 3 Aug 2013
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[ 08:45 az ] (Only the first 10 of 140 ports in this commit are shown above. )
- Convert to new perl framework
- Trim Makefile header
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Sat, 20 Jul 2013
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[ 15:08 wen ]
- Update to 3.0
- Convert to optionsNG
- Drop maintainership
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Mon, 1 Oct 2012
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[ 14:55 wen ]
- Take maintainership
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[ 14:45 tabthorpe ] (Only the first 10 of 47 ports in this commit are shown above. )
- Reassign to the heap at maintainer's request
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Sun, 1 Feb 2009
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[ 08:17 pgollucci ]
- Update download locations, update WWW
Reported by: -fetch-original pointyhat run
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Thu, 25 Nov 2004
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[ 22:58 sem ]
- Remove a junk white space.
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[ 22:35 sem ]
- Update to 2.3.2
- Add WITH_PVM knob
- Pass maintainership to submitter
PR: ports/74331
Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
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Sat, 20 Nov 2004
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[ 08:09 linimon ] (Only the first 10 of 33 ports in this commit are shown above. )
With portmgr hat on, reset inactive maintainer. These ports are now up
for adoption.
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Fri, 7 Mar 2003
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[ 05:56 ade ] (Only the first 10 of 28 ports in this commit are shown above. )
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.
E Nomini Patri, E Fili, E Spiritu Sancti.
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Thu, 11 Jul 2002
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[ 10:52 wjv ]
- Add patch that will, for -CURRENT only, change: -pthread -> -lc_r
- Bump $PORTREVISION
Prompted by: Various questions from Rune Linding <linding@EMBL-Heidelberg.DE>
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Wed, 22 Aug 2001
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[ 14:18 wjv ]
- Update port to version 2.2g
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Thu, 5 Jul 2001
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[ 09:58 wjv ]
- General clean-up of port. - Install PDF and HTML documentation. - Take
over maintainership.
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Wed, 4 Jul 2001
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[ 13:16 wjv ]
- Add %%PORTDOCS%% support to pkg-plist. - $INSTALL_MAN -> $INSTALL_DATA in
Makefile where appropriate.
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Number of commits found: 35 |
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