non port: biology/bwa/Makefile |
SVNWeb
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Number of commits found: 18 |
Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 1 Dec 2021
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[ 17:34 Piotr Kubaj (pkubaj) ] f75ac0c
biology/bwa: don't use GCC on powerpc64le
Now that the port uses simde, it builds fine without gcc's translation.
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[ 14:56 Jason W. Bacon (jwb) ] c74d976
biology/bwa: Unbreak on most non-x86 platforms using simde
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Tue, 2 Mar 2021
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[ 15:01 pkubaj ]
biology/bwa: fix build on powerpc64le
Use GCC's SSE->Altivec translation:
In file included from ksw.c:29:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
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Sat, 2 Jan 2021
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[ 01:46 linimon ] (Only the first 10 of 34 ports in this commit are shown above. )
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.
While here, pet portlint (Makevar order).
Approved by: portmgr (tier-2 blanket)
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Fri, 28 Aug 2020
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[ 11:17 tcberner ]
biology/bwa: fix build on recent current
Obtained
from: https://github.com/lh3/bwa/commit/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284
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Wed, 31 Jan 2018
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[ 01:07 jwb ] (Only the first 10 of 56 ports in this commit are shown above. )
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14128
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Thu, 30 Nov 2017
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[ 06:13 linimon ] (Only the first 10 of 189 ports in this commit are shown above. )
For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.
This is part two of a multipart commit to bring armv7 ports to parity
with armv6.
Approved by: portmgr (tier-2 blanket)
Obtained from: lonesome.com -exp run
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Tue, 28 Nov 2017
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[ 15:21 jwb ]
biology/bwa: Upgrade to 0.7.17
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13283
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Fri, 26 May 2017
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[ 20:02 linimon ] (Only the first 10 of 32 ports in this commit are shown above. )
Mark some ports failing on armv6, for errors classified as "???".
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Sat, 13 May 2017
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[ 03:35 linimon ] (Only the first 10 of 34 ports in this commit are shown above. )
Mark some ports failing on power64. In cases where the error message
was a stub, provide a real one.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Tue, 31 Jan 2017
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[ 03:40 linimon ] (Only the first 10 of 37 ports in this commit are shown above. )
Mark various ports broken on aarch64 and armv6.
Approved by: portmgr (tier-2 blanket)
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Fri, 11 Nov 2016
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[ 09:07 linimon ]
Attempt to fix build on non-x86 archs.
Approved by: portmgr (tier-2 blanket)
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Sun, 13 Dec 2015
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[ 16:07 swills ] (Only the first 10 of 26 ports in this commit are shown above. )
mark some of the ports that don't build on powerpc64 for me
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Fri, 11 Dec 2015
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[ 08:48 miwi ] (Only the first 10 of 54 ports in this commit are shown above. )
- Update maintainer mail address
- Update/Remove MASTER_SITE
PR: 204755
Submitted by: jwbacon@tds.net (maintainer)
Approved by: mat (mentor)
Differential Revision: D4493
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Fri, 25 Sep 2015
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[ 18:39 rm ]
BWA is a program for aligning sequencing reads against a large reference
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.
WWW: http://sourceforge.net/projects/bio-bwa/
PR: 203158
Submitted by: Jason Bacon <jwbacon@tds.net>
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Number of commits found: 18 |