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Port details
smoldyn Biochemical simulator for molecular diffusion, surface interactions
2.69 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-06-09 03:26:30
Last Update: 2022-10-20 20:31:39
Commit Hash: 2e0d3b8
License: LGPL3
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (35 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/smoldyn-2.69/catalog.mk
  3. /usr/local/share/licenses/smoldyn-2.69/LICENSE
  4. /usr/local/share/licenses/smoldyn-2.69/LGPL3
  5. bin/smoldyn
  6. include/libsmoldyn.h
  7. include/smoldyn.h
  8. include/smoldynconfigure.h
  9. lib/libsmoldyn_shared.so
  10. lib/libsmoldyn_static.a
  11. @comment lib/python3.9/site-packages/smoldyn/__init__.py
  12. @comment lib/python3.9/site-packages/smoldyn/__main__.py
  13. @comment lib/python3.9/site-packages/smoldyn/__pycache__/__init__.cpython-39.pyc
  14. @comment lib/python3.9/site-packages/smoldyn/__pycache__/smoldyn.cpython-39.pyc
  15. @comment lib/python3.9/site-packages/smoldyn/__pycache__/types.cpython-39.pyc
  16. @comment lib/python3.9/site-packages/smoldyn/__pycache__/utils.cpython-39.pyc
  17. @comment lib/python3.9/site-packages/smoldyn/_smoldyn.cpython-310-darwin.so
  18. @comment lib/python3.9/site-packages/smoldyn/_smoldyn.cpython-39-darwin.so
  19. @comment lib/python3.9/site-packages/smoldyn/_smoldyn.cpython-39.so
  20. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__init__.py
  21. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__main__.py
  22. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__pycache__/__init__.cpython-39.pyc
  23. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__pycache__/_version.cpython-39.pyc
  24. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__pycache__/combine.cpython-39.pyc
  25. @comment lib/python3.9/site-packages/smoldyn/biosimulators/__pycache__/data_model.cpython-39.pyc
  26. @comment lib/python3.9/site-packages/smoldyn/biosimulators/_version.py
  27. @comment lib/python3.9/site-packages/smoldyn/biosimulators/combine.py
  28. @comment lib/python3.9/site-packages/smoldyn/biosimulators/data_model.py
  29. @comment lib/python3.9/site-packages/smoldyn/biosimulators/utils.py
  30. @comment lib/python3.9/site-packages/smoldyn/smoldyn.py
  31. @comment lib/python3.9/site-packages/smoldyn/types.py
  32. @comment lib/python3.9/site-packages/smoldyn/utils.py
  33. @owner
  34. @group
  35. @mode
Collapse this list.
Dependency lines:
  • smoldyn>0:science/smoldyn
To install the port:
cd /usr/ports/science/smoldyn/ && make install clean
To add the package, run one of these commands:
  • pkg install science/smoldyn
  • pkg install smoldyn
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: smoldyn
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
smoldyn
ABIlatestquarterly
FreeBSD:11:aarch64pkg-fallout2.61
FreeBSD:11:amd642.662.66
FreeBSD:11:armv6pkg-fallout2.61
FreeBSD:11:i3862.662.66
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch64pkg-fallout2.69
FreeBSD:12:amd642.692.69
FreeBSD:12:armv6pkg-fallout2.61
FreeBSD:12:armv7pkg-fallout2.61
FreeBSD:12:i3862.692.69
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout2.64
FreeBSD:13:aarch642.692.69
FreeBSD:13:amd642.692.69
FreeBSD:13:armv62.632.67
FreeBSD:13:armv72.692.69
FreeBSD:13:i3862.692.69
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc642.632.69
FreeBSD:13:riscv64pkg-fallout2.67
FreeBSD:14:aarch642.69pkg-fallout
FreeBSD:14:amd642.69pkg-fallout
FreeBSD:14:armv62.69pkg-fallout
FreeBSD:14:armv72.69pkg-fallout
FreeBSD:14:i3862.69pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc642.69pkg-fallout
FreeBSD:14:riscv642.67pkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
  3. xorgproto>=0 : x11/xorgproto
  4. xorgproto>=0 : x11/xorgproto
  5. xi.pc : x11/libXi
  6. xmu.pc : x11-toolkits/libXmu
Runtime dependencies:
  1. xi.pc : x11/libXi
  2. xmu.pc : x11-toolkits/libXmu
Library dependencies:
  1. libtiff.so : graphics/tiff
  2. libGL.so : graphics/libglvnd
  3. libGLU.so : graphics/libGLU
  4. libglut.so : graphics/freeglut
There are no ports dependent upon this port

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://www.smoldyn.org/
Collapse this list.

Number of commits found: 18

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.69
20 Oct 2022 20:31:39
commit hash:2e0d3b8d4533f5472ade919e5c3e71aaefad9da4commit hash:2e0d3b8d4533f5472ade919e5c3e71aaefad9da4commit hash:2e0d3b8d4533f5472ade919e5c3e71aaefad9da4commit hash:2e0d3b8d4533f5472ade919e5c3e71aaefad9da4 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Update 2.68 -> 2.69; Fix tests

PYTHON options was added but it is disabled because one dependency
is missing. Tests, however, pass with PYTHON=ON
(and only with PYTHON=ON).
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.68
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.68
31 Jul 2022 08:12:49
commit hash:ed20ed0f88e595fc57b0e0757e405ad32a099c0acommit hash:ed20ed0f88e595fc57b0e0757e405ad32a099c0acommit hash:ed20ed0f88e595fc57b0e0757e405ad32a099c0acommit hash:ed20ed0f88e595fc57b0e0757e405ad32a099c0a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Update 2.67 -> 2.68
2.67
06 Nov 2021 23:56:37
commit hash:23df0ea7912929781c92dfd681c01ec13bff3021commit hash:23df0ea7912929781c92dfd681c01ec13bff3021commit hash:23df0ea7912929781c92dfd681c01ec13bff3021commit hash:23df0ea7912929781c92dfd681c01ec13bff3021 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Update 2.66 -> 2.67

Also
* replace MASTER_SITES and WWW with their https:// counterparts
* add the test target which is broken due to tarballs lacking test code

Reported by:	portscout
2.66
20 Jun 2021 17:58:51
commit hash:afec60b83fd2b3c95997e79fae8f25bf4dd099a3commit hash:afec60b83fd2b3c95997e79fae8f25bf4dd099a3commit hash:afec60b83fd2b3c95997e79fae8f25bf4dd099a3commit hash:afec60b83fd2b3c95997e79fae8f25bf4dd099a3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Update 2.65 -> 2.66

Reported by:	portscout
2.65_1
10 Jun 2021 00:24:37
commit hash:ba805707a74b37343321aedf365b40578114ce3acommit hash:ba805707a74b37343321aedf365b40578114ce3acommit hash:ba805707a74b37343321aedf365b40578114ce3acommit hash:ba805707a74b37343321aedf365b40578114ce3a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Fix build - release was rerolled

The upstream has confirmed that they rerolled it.

Reported by:	fallout
2.65
21 May 2021 10:00:48
commit hash:51b1e120d72ea53d77c7da9e2d4f11978f2efff9commit hash:51b1e120d72ea53d77c7da9e2d4f11978f2efff9commit hash:51b1e120d72ea53d77c7da9e2d4f11978f2efff9commit hash:51b1e120d72ea53d77c7da9e2d4f11978f2efff9 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/smoldyn: Update 2.64 -> 2.65

Reported by:	portscout
2.64
07 Apr 2021 08:09:01
commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
2.64
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.64
25 Mar 2021 09:57:48
Revision:569194Original commit files touched by this commit
yuri search for other commits by this committer
science/smoldyn: Update 2.63 -> 2.64

Reported by:	portscout
2.63
20 Dec 2020 06:45:09
Revision:558716Original commit files touched by this commit
yuri search for other commits by this committer
science/smoldyn: Update 2.62 -> 2.63

Reported by:	portscout
2.62
03 Nov 2020 20:46:52
Revision:554035Original commit files touched by this commit
pkubaj search for other commits by this committer
science/smoldyn: fix build on GCC architectures

/wrkdirs/usr/ports/science/smoldyn/work/smoldyn-2.62/source/pybind11/include/pybind11/buffer_info.h:18:
error: 'nullptr' was not declared in this scope
2.62
19 Oct 2020 03:49:24
Revision:552708Original commit files touched by this commit
yuri search for other commits by this committer
science/smoldyn: Update distinfo after the upstream rerolled the release tarball

The changes only affect the Windows build and not FreeBSD.

Reported by:	fallout
2.62
15 Oct 2020 22:37:53
Revision:552484Original commit files touched by this commit
yuri search for other commits by this committer
science/smoldyn: Update 2.61 -> 2.62

Reported by:	portscout
2.61
07 Nov 2019 17:17:54
Revision:516988Original commit files touched by this commit
zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories s

Add USES=xorg and USES=gl to ports in categories starting with 's'
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.
2.61
31 Jul 2019 06:15:13
Revision:507699Original commit files touched by this commit
yuri search for other commits by this committer
science/smoldyn: Update 2.60 -> 2.61

Reported by:	portscout
2.60
09 Jun 2019 03:26:16
Revision:503774Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/smoldyn: Biochemical simulator for molecular diffusion,
surface interactions

Number of commits found: 18