Port details on branch 2022Q2 |
- py-ruffus Lightweight library for computational pipelines
- 2.8.4 science =0 2.8.4Version of this port present on the latest quarterly branch.
- Maintainer: kai@FreeBSD.org
- Port Added: 2019-07-11 16:51:11
- Last Update: 2023-12-20 10:52:13
- Commit Hash: 1621368
- Also Listed In: python
- License: MIT
- WWW:
- http://www.ruffus.org.uk
- Description:
- The Ruffus module is a lightweight way to add support for running computational
pipelines.
Computational pipelines are often conceptually quite simple, especially if we
breakdown the process into simple stages, or separate tasks.
Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple jobs.
Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}ruffus>0:science/py-ruffus@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-ruffus/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-ruffus
- pkg install py39-ruffus
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-ruffus listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-ruffus
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1702995386
SHA256 (ruffus-2.8.4.tar.gz) = 6cd3d96e459a1aedcc10341f14fddedfdc13664551757fcd429a241de63826aa
SIZE (ruffus-2.8.4.tar.gz) = 12147217
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-sqlite3>0 : databases/py-sqlite3@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-sqlite3>0 : databases/py-sqlite3@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- science_py-ruffus
- USES:
- python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|