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Port details on branch 2022Q2
py-rmsd Calculate root-mean-square deviation (RMSD) between coordinate sets
1.4_1 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.4_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-01-18 02:03:56
Last Update: 2023-06-27 19:34:34
Commit Hash: 3d9a815
License: BSD2CLAUSE
WWW:
https://github.com/charnley/rmsd
Description:
Calculate Root-mean-square deviation (RMSD) of Two Molecules Using Rotation. The root-mean-square deviation (RMSD) is calculated, using Kabsch algorithm (1976) or Quaternion algorithm (1991) for rotation, between two Cartesian coordinates in either .xyz or .pdb format, resulting in the minimal RMSD.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}rmsd>0:science/py-rmsd@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-rmsd/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-rmsd
  • pkg install py39-rmsd
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-rmsd listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-rmsd
Package flavors (<flavor>: <package>)
  • py39: py39-rmsd
distinfo:
TIMESTAMP = 1605074347 SHA256 (rmsd-1.4.tar.gz) = 16a84a5f919faa0f2361e55ad4009a7c28e19a21ee9cc3bdb83f28ffb566563f SIZE (rmsd-1.4.tar.gz) = 18001

Packages (timestamps in pop-ups are UTC):
py39-rmsd
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.4_11.4_1-1.4_11.4_1---
FreeBSD:13:quarterly1.4_11.4_1--1.4_1-1.4_1-
FreeBSD:14:latest1.4_11.4_1-1.4_11.4_1---
FreeBSD:14:quarterly1.4_11.4_1--1.4_1-1.4_1-
FreeBSD:15:latest1.4_11.4_1n/a1.4_1n/a-1.4_11.4_1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  2. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.25,1 : math/py-numpy@py39
  2. py39-scipy>0 : science/py-scipy@py39
  3. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  4. python3.9 : lang/python39
This port is required by:
for Build
  1. science/py-atomium
for Run
  1. science/py-atomium

Configuration Options:
No options to configure
Options name:
science_py-rmsd
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/r/rmsd/
  2. https://pypi.org/packages/source/r/rmsd/
Collapse this list.

There are no commits on branch 2022Q2 for this port