| Port details on branch 2022Q2 |
- py-pyteomics Python modules for proteomics data analysis
- 4.7.1_1 science
 =0      4.7.1_1Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
- Port Added: 2015-11-02 09:24:59
- Last Update: 2024-03-09 14:06:14
- Commit Hash: 14b7df3
- Also Listed In: python
- License: APACHE20
- WWW:
- https://pyteomics.readthedocs.io/en/latest/
- https://github.com/levitsky/pyteomics
- Description:
- Pyteomics is a collection of lightweight and handy tools for Python that help to
handle various sorts of proteomics data. Pyteomics provides a growing set of
modules to facilitate the most common tasks in proteomics data analysis, such
as:
- calculation of basic physico-chemical properties of polypeptides:
- mass and isotopic distribution
- charge and pI
- chromatographic retention time
- access to common proteomics data:
- MS or LC-MS data
- FASTA databases
- search engines output
- easy manipulation of sequences of modified peptides and proteins
The goal of the Pyteomics project is to provide a versatile, reliable and
well-documented set of open tools for the wide proteomics community. One of the
project's key features is Python itself, an open source language increasingly
popular in scientific programming. The main applications of the library are
reproducible statistical data analysis and rapid software prototyping.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}pyteomics>0:science/py-pyteomics@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-pyteomics/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-pyteomics
- pkg install py39-pyteomics
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-pyteomics listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-pyteomics
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1709764215
SHA256 (pyteomics-4.7.1.tar.gz) = e5e5d3204af3050b9bf95bb64941b6156331335216e125ac253e7c8dfb1cf0ab
SIZE (pyteomics-4.7.1.tar.gz) = 233874
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=0 : devel/py-setuptools@py39
- py39-wheel>=0 : devel/py-wheel@py39
- python3.9 : lang/python39
- py39-build>=0 : devel/py-build@py39
- py39-installer>=0 : devel/py-installer@py39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-pandas>=0.17,1 : math/py-pandas@py39
- py39-matplotlib>=0 : math/py-matplotlib@py39
- py39-numpy>=0,1 : math/py-numpy@py39
- py39-lxml>=0 : devel/py-lxml@py39
- py39-sqlalchemy14>=0 : databases/py-sqlalchemy14@py39
- py39-lxml>=0 : devel/py-lxml@py39
- py39-numpy>=0,1 : math/py-numpy@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for py39-pyteomics-4.7.1_1:
DF=on: DataFrame support
GRAPHICS=on: Graphics support
TDA=on: Target-decoy approach support
UNIMOD=on: Unimod database support
XML=on: XML support
===> Use 'make config' to modify these settings
- Options name:
- science_py-pyteomics
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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