science/py-h5py: Update to 3.6.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.6.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.5.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.5.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update version requirement of BUILD_DEPENDS

science/py-h5py: Update to 3.4.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.4.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

science/py-h5py: Update to 3.3.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.3.rst
		https://docs.h5py.org/en/stable/whatsnew/index.html

Mk: switch PYTHON_REL to 5 digits to support python 3.10.x

PR:		255013
Differential Revision:	https://reviews.freebsd.org/D29418
Exp-run by:	antoine
Approved by:	wen@, no objection from python@ or portmgr@

science/py-h5py: Remove PYNUMPY

science/py-h5py: Update to 3.2.1

- Update USES=python of dependent ports

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.2.rst

Remove # $FreeBSD$ from Makefiles.

Update to 3.1.0

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/3.1.rst

Drop python 2.7 support from a few ports

With hat:	portmgr

Update to 2.10.0

- Sort PLIST

Changes:	https://github.com/h5py/h5py/releases
		https://github.com/h5py/h5py/blob/master/docs/whatsnew/2.10.rst

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Update to 2.9.0

- Convert PORTDOCS and PORTEXAMPLES to PLIST entries

Changes:	https://github.com/h5py/h5py/releases

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Update science/hdf5 to 1.10.2

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine

Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight

Update to 2.8.0

Changes:	https://github.com/h5py/h5py/releases

Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
they now redirect to anyway. All new urls checked to return 200,
I've fixed a couple of them in the process.

Approved by:	portmgr blanket, mat

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Update to 2.7.1

- Change MASTER_SITES to CHEESESHOP
- Sort BUILD_DEPENDS
- Update pkg-descr
- Add PyPI and GitHub repository to WWW
- Take maintainership

science/py-h5py: Update to 2.7.1

Additional port changes:
* Changed to DISTVERSION
* Grouped USExx
* Added USE_PYTHON=concurrent (for docs, examples)
* Removed patching (in post-patch and files/)
* Added stripping
* Updated WWW

Approved by:	tcberner (mentor, implicit)

Give xmj@'s ports back to the pool

PR:		226157
Submitted by:	xmj

Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the

Update to 2.7.0

PR:		219754
Submitted by:	xmj (maintainer)

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

- Remove bogus NO_ARCH: this module installs .so files
- Cosmetic fixes

Approved by:	portmgr blanket

Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)

Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj

science/py-h5py: 2.5.0 -> 2.6.0

PR:		209630
Submitted by:	Johannes Jost Meixner <xmj@chaot.net> (maintainer)

- Update to 1.10.0
- Add LICENSE_FILE
- Remove outdated PORTSCOUT
- Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 2.5.0
- Switch to options helper
- Switch to do-test

PR:		205137
Submitted by:	maintainer
Approved by:	mat (mentor)
Differential Revision:	D4507

- Update to 1.8.15
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Update ports in the s* categores to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 1.8.14
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of
MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

science/py-h5py: upgrade to 2.4.0

- upgrade to 2.4.0

Differential Revision:	https://reviews.freebsd.org/D1456
Approved by:	koobs (mentor)

Update "BSD" license in science category

- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

science/py-h5py: Upgrade to 2.3.0

- Update to 2.3.0
- Remove BROKEN mark

Approved by:	swills (mentor)

Mark BROKEN: Does not build

cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include
-I/usr/local/include/python2.7 -c h5py/h5fd.c -o
build/temp.freebsd-10.0-RELEASE-p3-amd64-2.7/h5py/h5fd.o
In file included from h5py/h5fd.c:259:
In file included from h5py/api_compat.h:21:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "          "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
h5py/h5fd.c:857:39: error: use of undeclared identifier 'H5FD_MPIPOSIX'
  __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1))
{__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto
__pyx_L1_error;}
                                      ^
1 warning and 1 error generated.
error: command 'cc' failed with exit status 1
*** Error code 1

Reported by:	pkg-fallout

- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

science/py-h5py: update to 2.2.1

- Update to 2.2.1
- Add EXAMPLES

PR:		ports/184746
Submitted by:	maintainer

science/py-h5py: update to 2.2.0

- Update to 2.2.0
- Add LICENSE (BSD)
- Add DOCS
- Pass maintainership to submitter

PR:		ports/183519
Submitted by:	Johannes Jost Meixner <xmj chaot.net>
Approved by:	maintainer (timeout, 2 weeks, 3 times)

- Update to 2.1.1
- Remove leading article from COMMENT
- Use default dependency for science/hdf5-18
- Add patch

PR:		ports/181483
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	wg (mentor)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

science/py-h5py: Add OPTION support for HDF5 1.8

- Add OPTION to use science/hdf5-18 instead of science/hdf5

PR:		ports/179572
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	maintainer timeout (8 weeks)

 - remove MD5

- Add py-numpy into RUN_DEPENDS

PR:             ports/143419
Submitted by:   TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)

- Update to 1.2.1

PR:             ports/138984
Submitted by:   wenheping@gmail.com(myself)
Approved by:    maintainer,     jadawin(co-mentor)
Feature safe:   yes

Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5
library.

PR:             ports/136096
Submitted by:   TAOKA Fumiyoshi