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Port details
py-gemmi Macromolecular crystallography library and utilities
0.6.5 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.6.5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-10-04 01:36:50
Last Update: 2024-02-18 10:07:54
Commit Hash: 555dead
Also Listed In: python
License: MPL20
WWW:
https://gemmi.readthedocs.io/en/latest/
Description:
Gemmi is a library, accompanied by a set of programs, developed primarily for use in macromolecular crystallography (MX). For working with: * macromolecular models (content of PDB, PDBx/mmCIF and mmJSON files), * refinement restraints (CIF files), * reflection data (MTZ and mmCIF formats), * data on a 3D grid (electron density maps, masks, MRC/CCP4 format) * crystallographic symmetry.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}gemmi>0:science/py-gemmi@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-gemmi/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-gemmi
  • pkg install py39-gemmi
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-gemmi listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-gemmi
Package flavors (<flavor>: <package>)
  • py39: py39-gemmi
distinfo:
TIMESTAMP = 1708246407 SHA256 (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 9159506a16e0d22bbeeefc4d34137099318307db1b2bebf06fb2ae501571b19c SIZE (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 1785842

Packages (timestamps in pop-ups are UTC):
py39-gemmi
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.6.50.6.5-0.6.50.6.5---
FreeBSD:13:quarterly0.6.50.6.50.6.20.6.50.6.50.6.40.6.40.6.4
FreeBSD:14:latest0.6.50.6.50.5.80.6.50.6.50.6.2-0.6.2
FreeBSD:14:quarterly0.6.50.6.5-0.6.50.6.50.6.40.6.40.6.4
FreeBSD:15:latest0.6.50.6.5n/a0.6.5n/a0.6.40.6.40.6.5
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-pip>0 : devel/py-pip@py39
  2. py39-pybind11>0 : devel/py-pybind11@py39
  3. py39-wheel>0 : devel/py-wheel@py39
  4. pybind11>=2.6 : devel/pybind11
  5. cmake : devel/cmake-core
  6. ninja : devel/ninja
  7. python3.9 : lang/python39
Test dependencies:
  1. py39-biopython>0 : biology/py-biopython@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
Library dependencies:
  1. libgemmi_cpp.so : science/gemmi
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-gemmi
USES:
cmake compiler:c++20-lang localbase:ldflags python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/project-gemmi/gemmi/tar.gz/v0.6.5?dummy=/
Collapse this list.

Number of commits found: 8

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.6.5
18 Feb 2024 10:07:54
commit hash: 555deadfa394ed7671fc2630d230a37fe230c53ccommit hash: 555deadfa394ed7671fc2630d230a37fe230c53ccommit hash: 555deadfa394ed7671fc2630d230a37fe230c53ccommit hash: 555deadfa394ed7671fc2630d230a37fe230c53c files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: update 0.6.4 → 0.6.5

Reported by:	portscout
0.6.4
14 Dec 2023 21:04:02
commit hash: ce82996724b503f52faef9fb02075b9d7aa94b01commit hash: ce82996724b503f52faef9fb02075b9d7aa94b01commit hash: ce82996724b503f52faef9fb02075b9d7aa94b01commit hash: ce82996724b503f52faef9fb02075b9d7aa94b01 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: update 0.6.3 → 0.6.4

Reported by:	portscout
0.6.3
10 Sep 2023 18:10:46
commit hash: ef2fc742247825f57828cbd0b6f774cd0ca13cfacommit hash: ef2fc742247825f57828cbd0b6f774cd0ca13cfacommit hash: ef2fc742247825f57828cbd0b6f774cd0ca13cfacommit hash: ef2fc742247825f57828cbd0b6f774cd0ca13cfa files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: update 0.6.2 → 0.6.3

Reported by:	portscout
0.6.2
28 May 2023 23:41:04
commit hash: 294400f8d06a8ec06875462ce0a2cc792382efe3commit hash: 294400f8d06a8ec06875462ce0a2cc792382efe3commit hash: 294400f8d06a8ec06875462ce0a2cc792382efe3commit hash: 294400f8d06a8ec06875462ce0a2cc792382efe3 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: Update 0.6.0 → 0.6.2

Reported by:	portscout
0.6.0
08 Mar 2023 11:41:47
commit hash: 224ec2aabb2bfa9e2c5d3ad4c594536ceb70b8f7commit hash: 224ec2aabb2bfa9e2c5d3ad4c594536ceb70b8f7commit hash: 224ec2aabb2bfa9e2c5d3ad4c594536ceb70b8f7commit hash: 224ec2aabb2bfa9e2c5d3ad4c594536ceb70b8f7 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-gemmi: Update 0.5.8 → 0.6.0

Reported by:	portscout
0.5.8
25 Dec 2022 11:00:41
commit hash: 0ab73b4e27012ac29a3543695181d9a398d8e942commit hash: 0ab73b4e27012ac29a3543695181d9a398d8e942commit hash: 0ab73b4e27012ac29a3543695181d9a398d8e942commit hash: 0ab73b4e27012ac29a3543695181d9a398d8e942 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: Update 0.5.7 -> 0.5.8

Reported by:	portscout
0.5.7
04 Oct 2022 02:40:28
commit hash: 49a0e9d42e7794d0a517b0dee63e28b4fc656a26commit hash: 49a0e9d42e7794d0a517b0dee63e28b4fc656a26commit hash: 49a0e9d42e7794d0a517b0dee63e28b4fc656a26commit hash: 49a0e9d42e7794d0a517b0dee63e28b4fc656a26 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-gemmi: Correct CATEGORIES
0.5.7
04 Oct 2022 01:35:25
commit hash: 8a36560387ba1080e185f6e3cd73e1cc45fddf2ecommit hash: 8a36560387ba1080e185f6e3cd73e1cc45fddf2ecommit hash: 8a36560387ba1080e185f6e3cd73e1cc45fddf2ecommit hash: 8a36560387ba1080e185f6e3cd73e1cc45fddf2e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/{,py-}gemmi: New ports: Macromolecular crystallography library and
utilities

Number of commits found: 8