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Port details
py-atomium Molecular modeller and file parser
1.0.11_2 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.11_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-10-04 04:09:29
Last Update: 2024-05-20 10:33:03
Commit Hash: b66e494
Also Listed In: biology python
License: MIT
WWW:
https://atomium.bio/
Description:
atomium is a molecular modeller and file parser, capable of reading from and writing to .pdb, .cif and .mmtf files.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}atomium>0:science/py-atomium@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-atomium/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-atomium
  • pkg install py39-atomium
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-atomium listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-atomium
Package flavors (<flavor>: <package>)
  • py39: py39-atomium
distinfo:
TIMESTAMP = 1664851734 SHA256 (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = f26fec07ab7777032e2f829e4338021543f5ccbd76f59dc47c12decc9b1ebe88 SIZE (samirelanduk-atomium-v1.0.11_GH0.tar.gz) = 21454532

Packages (timestamps in pop-ups are UTC):
py39-atomium
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.0.11_21.0.11_2--1.0.11_2---
FreeBSD:13:quarterly1.0.11_11.0.11_1--1.0.11_1-1.0.11_1-
FreeBSD:14:latest1.0.11_11.0.11_2--1.0.11_2---
FreeBSD:14:quarterly1.0.11_11.0.11_1--1.0.11_1-1.0.11_1-
FreeBSD:15:latest1.0.11_11.0.11_2n/a-n/a-1.0.11_1-
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-coveralls>0 : devel/py-coveralls@py39
  2. py39-msgpack>=0.6.1 : devel/py-msgpack@py39
  3. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  4. py39-paramiko>0 : security/py-paramiko@py39
  5. py39-requests>0 : www/py-requests@py39
  6. py39-rmsd>0 : science/py-rmsd@py39
  7. py39-sphinx>0 : textproc/py-sphinx@py39
  8. py39-sphinx_rtd_theme>0 : textproc/py-sphinx_rtd_theme@py39
  9. py39-tqdm>0 : misc/py-tqdm@py39
  10. py39-valerius>=0.2 : biology/py-valerius@py39
  11. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  12. python3.9 : lang/python39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-coveralls>0 : devel/py-coveralls@py39
  2. py39-msgpack>=0.6.1 : devel/py-msgpack@py39
  3. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  4. py39-paramiko>0 : security/py-paramiko@py39
  5. py39-requests>0 : www/py-requests@py39
  6. py39-rmsd>0 : science/py-rmsd@py39
  7. py39-sphinx>0 : textproc/py-sphinx@py39
  8. py39-sphinx_rtd_theme>0 : textproc/py-sphinx_rtd_theme@py39
  9. py39-tqdm>0 : misc/py-tqdm@py39
  10. py39-valerius>=0.2 : biology/py-valerius@py39
  11. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  12. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_py-atomium
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/samirelanduk/atomium/tar.gz/v1.0.11?dummy=/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.0.11_2
20 May 2024 10:33:03
commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377 files touched by this commit
Vsevolod Stakhov (vsevolod) search for other commits by this committer
security/libsodium: update to 1.0.19, bump dependent ports

PR:	278259
Reported by:	Andrey Korobkov <alster-vinterdalen.se>
1.0.11_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.0.11
04 Oct 2022 04:06:22
commit hash: c8a9968da25a57597a29511b65cc66f78b212096commit hash: c8a9968da25a57597a29511b65cc66f78b212096commit hash: c8a9968da25a57597a29511b65cc66f78b212096commit hash: c8a9968da25a57597a29511b65cc66f78b212096 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
science/py-atomium: New port: Molecular modeller and file parser

Number of commits found: 3