| Port details |
- py-DendroPy Phylogenetic computing library
- 4.4.0 science
 =0      4.4.0Version of this port present on the latest quarterly branch. - Maintainer: cs@FreeBSD.org
- Port Added: 2010-01-09 12:20:30
- Last Update: 2021-04-06 14:31:07
- Commit Hash: 305f148
- Also Listed In: python
- License: BSD3CLAUSE
- Description:
- py-DendroPy is a python library for phylogenetic scripting,
simulation, data processing and manipulation.
WWW: http://packages.python.org/DendroPy/
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}DendroPy>0:science/py-DendroPy@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/science/py-DendroPy/ && make install clean
- To add the package, run one of these commands:
- pkg install science/py-DendroPy
- pkg install py38-DendroPy
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.NOTE: This is a Python port. Instead of py38-DendroPy listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py38-DendroPy
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1539118893
SHA256 (DendroPy-4.4.0.tar.gz) = f0a0e2ce78b3ed213d6c1791332d57778b7f63d602430c1548a5d822acf2799c
SIZE (DendroPy-4.4.0.tar.gz) = 15166418
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py38-setuptools>0 : devel/py-setuptools@py38
- python3.8 : lang/python38
- Runtime dependencies:
-
- py38-setuptools>0 : devel/py-setuptools@py38
- python3.8 : lang/python38
- This port is required by:
- for Run
-
- biology/checkm
- Configuration Options:
- No options to configure
- Options name:
- science_py-DendroPy
- USES:
- python:3.6+
- pkg-message:
- For install:
- If you use this library either in whole or in part in your analysis, or
use any code derived from it, please cite it as:
Sukumaran, J. and Mark T. Holder. 2010. DendroPy: A Python library
for phylogenetic computing. Bioinformatics 26: 1569-1571.
- Master Sites:
|
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
|---|
06 Apr 2021 14:31:07
  4.4.0
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
28 Dec 2020 23:02:15
  4.4.0
|
antoine |
Drop python 2.7 support from a few ports
With hat: portmgr |
14 Aug 2019 12:16:13
4.4.0
|
mat |
Convert to UCL & cleanup pkg-message (categories s) |
12 Oct 2018 14:58:58
4.4.0
|
antoine |
Fix packaging with python 3.x
Reported by: pkg-fallout |
09 Oct 2018 21:04:29
4.4.0
|
cs |
Update to 4.4.0 |
28 Jan 2018 22:26:46
4.3.0
|
antoine |
%%PYTHON_PYOEXTENSION%% is harmful in python2 style plists
Pointy hat: cs@ |
27 Jan 2018 19:16:04
4.3.0
|
cs |
Update to 4.3.0 |
20 Jan 2018 20:08:15
4.2.0
|
antoine |
Fix packaging with python 3 by using py3kplist |
30 Nov 2017 15:50:34
4.2.0 
|
mat |
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the (Only the first 15 lines of the commit message are shown above  ) |
29 Mar 2017 21:16:07
4.2.0
|
cs |
Update to 4.2.0 |
23 May 2016 18:36:52
4.1.0
|
amdmi3 |
Convert tab after WWW: in pkg-descrs to single space as per PHB
Approved by: portmgr blanket |
07 Apr 2016 20:30:12
4.1.0
|
cs |
Update to 4.1.0 |
25 Dec 2015 12:30:50
4.0.3
|
cs |
Update to 4.0.3 |
27 May 2015 00:15:05
3.12.0_1
|
amdmi3 |
- Don't cat pkg-message from Makefiles
Approved by: portmgr blanket |
12 Nov 2014 18:48:53
3.12.0_1
|
antoine |
Cleanup plist |
24 Oct 2014 16:50:43
3.12.0_1
|
mva |
- Convert ports of science/ and security to new USES=python
Approved by: portmgr (implicit) |
01 Jun 2014 21:30:41
3.12.0_1
|
cs |
- Support staging
- Minor edits |
20 Sep 2013 22:48:31
3.12.0
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
science) |
18 Jul 2012 06:21:15
3.12.0
|
cs |
Update to 3.12.0 |
14 Apr 2012 18:41:27
3.11.0
|
cs |
Update to 3.11.0 |
31 Jan 2012 23:23:38
3.10.1
|
cs |
Update to 3.10.1
Approved by: glarkin@ (mentor, implicit) |
15 Sep 2011 12:33:27
3.9.0
|
cs |
Change maintainer address to my FreeBSD address
Approved by: wen@ (mentor) |
24 Aug 2011 18:15:24
3.9.0
|
glarkin |
- Updated to 3.9.0
ChangeLog: http://packages.python.org/DendroPy/changes.html
PR: ports/159157
Submitted by: C-S <c-s@c-s.li> (maintainer) |
16 Jun 2011 08:07:58
3.8.1
|
wen |
- Update to 3.8.1 |
21 Oct 2010 01:45:15
3.7.1
|
wen |
- Update to 3.7.1 |
08 Oct 2010 17:24:54
3.7.0
|
glarkin |
- Updated to 3.7.0
- Passed maintainership to submitter
- Switched to BSD license to adhere to upstream package
PR: ports/151178
Submitted by: Carlo Strub <c-s at c-s dot li> |
03 Sep 2010 10:46:39
3.6.1
|
wen |
- Update to 3.6.1 |
22 Aug 2010 18:09:23
3.5.0
|
lwhsu |
- Update to 3.5.0 |
08 Aug 2010 09:22:03
3.4.1
|
lwhsu |
- Update to 3.4.1
PR: ports/149415
Submitted by: Frederic Culot <frederic AT culot.org> |
06 Jul 2010 01:45:21
3.4.0
|
wen |
- Update to 3.4.0
Feature safe: yes |
13 May 2010 06:08:26
3.3.0
|
wen |
- Update to 3.3.0
- Reset maintainer |
30 Mar 2010 01:24:46
3.2.0
|
wen |
- Update to 3.2.0 |
25 Feb 2010 07:18:49
3.1.3
|
wen |
- Update to 3.1.3
Feature safe: yes |
02 Feb 2010 05:55:43
3.1.2
|
wen |
- Update to 3.1.2 |
21 Jan 2010 08:09:16
3.0.7
|
wen |
- Update to 3.0.7 |
15 Jan 2010 06:21:10
3.0.5
|
wen |
- Update to 3.0.5 |
09 Jan 2010 12:19:58
3.0.2
|
wen |
py-DendroPy is a python library for phylogenetic scripting,
simulation, data processing and manipulation.
WWW: http://packages.python.org/DendroPy/ |
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