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Port details
py-DendroPy Phylogenetic computing library
4.4.0 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.4.0Version of this port present on the latest quarterly branch.
Maintainer: cs@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2010-01-09 12:20:30
Last Update: 2021-04-06 14:31:07
Commit Hash: 305f148
Also Listed In: python
License: BSD3CLAUSE
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}DendroPy>0:science/py-DendroPy@${PY_FLAVOR}
To install the port:
cd /usr/ports/science/py-DendroPy/ && make install clean
To add the package, run one of these commands:
  • pkg install science/py-DendroPy
  • pkg install py38-DendroPy
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.NOTE: This is a Python port. Instead of py38-DendroPy listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py38-DendroPy
Package flavors (<flavor>: <package>)
  • py38: py38-DendroPy
distinfo:
Packages (timestamps in pop-ups are UTC):
py27-DendroPy
ABIlatestquarterly
FreeBSD:11:aarch644.3.04.4.0
FreeBSD:11:amd64--
FreeBSD:11:armv64.1.04.4.0
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips644.1.04.4.0
FreeBSD:12:aarch644.3.0-
FreeBSD:12:amd64--
FreeBSD:12:armv64.3.04.4.0
FreeBSD:12:armv74.4.04.4.0
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips644.4.04.4.0
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py36-DendroPy
ABIlatestquarterly
FreeBSD:11:aarch644.3.0-
FreeBSD:11:amd64--
FreeBSD:11:armv6--
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch644.3.0-
FreeBSD:12:amd64--
FreeBSD:12:armv64.3.0-
FreeBSD:12:armv7--
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips644.4.0-
FreeBSD:12:powerpc64--
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 
py37-DendroPy
ABIlatestquarterly
FreeBSD:11:aarch64-4.4.0
FreeBSD:11:amd64--
FreeBSD:11:armv6-4.4.0
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64-4.4.0
FreeBSD:12:aarch64--
FreeBSD:12:amd64--
FreeBSD:12:armv6-4.4.0
FreeBSD:12:armv7-4.4.0
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64-4.4.0
FreeBSD:12:powerpc64-4.4.0
FreeBSD:13:aarch64--
FreeBSD:13:amd64--
FreeBSD:13:armv64.4.0-
FreeBSD:13:armv74.4.0-
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc644.4.0-
FreeBSD:14:aarch64--
FreeBSD:14:amd64--
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc644.4.0-
 
py38-DendroPy
ABIlatestquarterly
FreeBSD:11:aarch64--
FreeBSD:11:amd644.4.04.4.0
FreeBSD:11:armv6--
FreeBSD:11:i3864.4.04.4.0
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-4.4.0
FreeBSD:12:amd644.4.04.4.0
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3864.4.04.4.0
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64--
FreeBSD:13:aarch644.4.04.4.0
FreeBSD:13:amd644.4.04.4.0
FreeBSD:13:armv6-4.4.0
FreeBSD:13:armv7-4.4.0
FreeBSD:13:i3864.4.04.4.0
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64-4.4.0
FreeBSD:14:aarch644.4.0-
FreeBSD:14:amd644.4.0-
FreeBSD:14:armv64.4.0-
FreeBSD:14:armv74.4.0-
FreeBSD:14:i3864.4.0-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc64--
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
This port is required by:
for Run
  1. biology/checkm

Configuration Options:
Options name:

USES:

pkg-message:
For install:
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/D/DendroPy/
  2. https://pypi.org/packages/source/D/DendroPy/
Collapse this list.

Number of commits found: 37

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  4.4.0
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
28 Dec 2020 23:02:15
Original commit files touched by this commit Revision:559531  4.4.0
antoine search for other commits by this committer
Drop python 2.7 support from a few ports

With hat:	portmgr
14 Aug 2019 12:16:13
Original commit files touched by this commit Revision:508909  4.4.0
mat search for other commits by this committer
Convert to UCL & cleanup pkg-message (categories s)
12 Oct 2018 14:58:58
Original commit files touched by this commit Revision:481907  4.4.0
antoine search for other commits by this committer
Fix packaging with python 3.x

Reported by:	pkg-fallout
09 Oct 2018 21:04:29
Original commit files touched by this commit Revision:481669  4.4.0
cs search for other commits by this committer
Update to 4.4.0
28 Jan 2018 22:26:46
Original commit files touched by this commit Revision:460232  4.3.0
antoine search for other commits by this committer
%%PYTHON_PYOEXTENSION%% is harmful in python2 style plists

Pointy hat:	cs@
27 Jan 2018 19:16:04
Original commit files touched by this commit Revision:460143  4.3.0
cs search for other commits by this committer
Update to 4.3.0
20 Jan 2018 20:08:15
Original commit files touched by this commit Revision:459546  4.2.0
antoine search for other commits by this committer
Fix packaging with python 3 by using py3kplist
30 Nov 2017 15:50:34
Original commit files touched by this commit Revision:455210  4.2.0  Sanity Test Failure
mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
29 Mar 2017 21:16:07
Original commit files touched by this commit Revision:437243  4.2.0
cs search for other commits by this committer
Update to 4.2.0
23 May 2016 18:36:52
Original commit files touched by this commit Revision:415738  4.1.0
amdmi3 search for other commits by this committer
Convert tab after WWW: in pkg-descrs to single space as per PHB

Approved by:	portmgr blanket
07 Apr 2016 20:30:12
Original commit files touched by this commit Revision:412694  4.1.0
cs search for other commits by this committer
Update to 4.1.0
25 Dec 2015 12:30:50
Original commit files touched by this commit Revision:404418  4.0.3
cs search for other commits by this committer
Update to 4.0.3
27 May 2015 00:15:05
Original commit files touched by this commit Revision:387529  3.12.0_1
amdmi3 search for other commits by this committer
- Don't cat pkg-message from Makefiles

Approved by:	portmgr blanket
12 Nov 2014 18:48:53
Original commit files touched by this commit Revision:372500  3.12.0_1
antoine search for other commits by this committer
Cleanup plist
24 Oct 2014 16:50:43
Original commit files touched by this commit Revision:371453  3.12.0_1
mva search for other commits by this committer
- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)
01 Jun 2014 21:30:41
Original commit files touched by this commit Revision:356177  3.12.0_1
cs search for other commits by this committer
- Support staging
- Minor edits
20 Sep 2013 22:48:31
Original commit files touched by this commit Revision:327767  3.12.0
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
18 Jul 2012 06:21:15
Original commit files touched by this commit   3.12.0  Sanity Test Failure
cs search for other commits by this committer
Update to 3.12.0
14 Apr 2012 18:41:27
Original commit files touched by this commit   3.11.0
cs search for other commits by this committer
Update to 3.11.0
31 Jan 2012 23:23:38
Original commit files touched by this commit   3.10.1
cs search for other commits by this committer
Update to 3.10.1

Approved by:    glarkin@ (mentor, implicit)
15 Sep 2011 12:33:27
Original commit files touched by this commit   3.9.0
cs search for other commits by this committer
Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)
24 Aug 2011 18:15:24
Original commit files touched by this commit   3.9.0
glarkin search for other commits by this committer
- Updated to 3.9.0
  ChangeLog: http://packages.python.org/DendroPy/changes.html

PR:             ports/159157
Submitted by:   C-S <c-s@c-s.li> (maintainer)
16 Jun 2011 08:07:58
Original commit files touched by this commit   3.8.1
wen search for other commits by this committer
- Update to 3.8.1
21 Oct 2010 01:45:15
Original commit files touched by this commit   3.7.1
wen search for other commits by this committer
- Update to 3.7.1
08 Oct 2010 17:24:54
Original commit files touched by this commit   3.7.0
glarkin search for other commits by this committer
- Updated to 3.7.0
- Passed maintainership to submitter
- Switched to BSD license to adhere to upstream package

PR:             ports/151178
Submitted by:   Carlo Strub <c-s at c-s dot li>
03 Sep 2010 10:46:39
Original commit files touched by this commit   3.6.1
wen search for other commits by this committer
- Update to 3.6.1
22 Aug 2010 18:09:23
Original commit files touched by this commit   3.5.0
lwhsu search for other commits by this committer
- Update to 3.5.0
08 Aug 2010 09:22:03
Original commit files touched by this commit   3.4.1
lwhsu search for other commits by this committer
- Update to 3.4.1

PR:             ports/149415
Submitted by:   Frederic Culot <frederic AT culot.org>
06 Jul 2010 01:45:21
Original commit files touched by this commit   3.4.0
wen search for other commits by this committer
- Update to 3.4.0

Feature safe:   yes
13 May 2010 06:08:26
Original commit files touched by this commit   3.3.0
wen search for other commits by this committer
- Update to 3.3.0
- Reset maintainer
30 Mar 2010 01:24:46
Original commit files touched by this commit   3.2.0
wen search for other commits by this committer
- Update to 3.2.0
25 Feb 2010 07:18:49
Original commit files touched by this commit   3.1.3
wen search for other commits by this committer
- Update to 3.1.3

Feature safe:   yes
02 Feb 2010 05:55:43
Original commit files touched by this commit   3.1.2
wen search for other commits by this committer
- Update to 3.1.2
21 Jan 2010 08:09:16
Original commit files touched by this commit   3.0.7
wen search for other commits by this committer
- Update to 3.0.7
15 Jan 2010 06:21:10
Original commit files touched by this commit   3.0.5
wen search for other commits by this committer
- Update to 3.0.5
09 Jan 2010 12:19:58
Original commit files touched by this commit   3.0.2
wen search for other commits by this committer
py-DendroPy is a python library for phylogenetic scripting,
simulation, data processing and manipulation.

WWW:    http://packages.python.org/DendroPy/

Number of commits found: 37