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Port details
plumed PLUgin for MolEcular Dynamics
2.8.0 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-04 19:56:15
Last Update: 2022-05-23 11:39:54
Commit Hash: 8560bab
Also Listed In: graphics
License: LGPL3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (535 items)
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  1. @ldconfig
  2. /usr/local/share/licenses/plumed-2.8.0/catalog.mk
  3. /usr/local/share/licenses/plumed-2.8.0/LICENSE
  4. /usr/local/share/licenses/plumed-2.8.0/LGPL3
  5. bin/plumed
  6. bin/plumed-config
  7. bin/plumed-patch
  8. include/plumed/analysis/AnalysisBase.h
  9. include/plumed/analysis/AverageVessel.h
  10. include/plumed/analysis/DataCollectionObject.h
  11. include/plumed/analysis/LandmarkSelectionBase.h
  12. include/plumed/analysis/ReadAnalysisFrames.h
  13. include/plumed/asmjit/arch.h
  14. include/plumed/asmjit/arm.h
  15. include/plumed/asmjit/asmjit.h
  16. include/plumed/asmjit/asmjit_apibegin.h
  17. include/plumed/asmjit/asmjit_apiend.h
  18. include/plumed/asmjit/asmjit_build.h
  19. include/plumed/asmjit/assembler.h
  20. include/plumed/asmjit/base.h
  21. include/plumed/asmjit/codebuilder.h
  22. include/plumed/asmjit/codecompiler.h
  23. include/plumed/asmjit/codeemitter.h
  24. include/plumed/asmjit/codeholder.h
  25. include/plumed/asmjit/constpool.h
  26. include/plumed/asmjit/cpuinfo.h
  27. include/plumed/asmjit/func.h
  28. include/plumed/asmjit/globals.h
  29. include/plumed/asmjit/inst.h
  30. include/plumed/asmjit/logging.h
  31. include/plumed/asmjit/misc_p.h
  32. include/plumed/asmjit/moved_string.h
  33. include/plumed/asmjit/operand.h
  34. include/plumed/asmjit/osutils.h
  35. include/plumed/asmjit/regalloc_p.h
  36. include/plumed/asmjit/runtime.h
  37. include/plumed/asmjit/simdtypes.h
  38. include/plumed/asmjit/utils.h
  39. include/plumed/asmjit/vmem.h
  40. include/plumed/asmjit/x86.h
  41. include/plumed/asmjit/x86assembler.h
  42. include/plumed/asmjit/x86builder.h
  43. include/plumed/asmjit/x86compiler.h
  44. include/plumed/asmjit/x86emitter.h
  45. include/plumed/asmjit/x86globals.h
  46. include/plumed/asmjit/x86inst.h
  47. include/plumed/asmjit/x86instimpl_p.h
  48. include/plumed/asmjit/x86internal_p.h
  49. include/plumed/asmjit/x86logging_p.h
  50. include/plumed/asmjit/x86misc.h
  51. include/plumed/asmjit/x86operand.h
  52. include/plumed/asmjit/x86regalloc_p.h
  53. include/plumed/asmjit/zone.h
  54. include/plumed/bias/ActionRegister.h
  55. include/plumed/bias/Bias.h
  56. include/plumed/bias/ReweightBase.h
  57. include/plumed/blas/blas.h
  58. include/plumed/blas/def_external.h
  59. include/plumed/blas/def_internal.h
  60. include/plumed/blas/real.h
  61. include/plumed/cltools/CLTool.h
  62. include/plumed/cltools/CLToolRegister.h
  63. include/plumed/colvar/ActionRegister.h
  64. include/plumed/colvar/Colvar.h
  65. include/plumed/colvar/CoordinationBase.h
  66. include/plumed/colvar/PathMSDBase.h
  67. include/plumed/config/Config.h
  68. include/plumed/config/version.h
  69. include/plumed/core/Action.h
  70. include/plumed/core/ActionAnyorder.h
  71. include/plumed/core/ActionAtomistic.h
  72. include/plumed/core/ActionPilot.h
  73. include/plumed/core/ActionRegister.h
  74. include/plumed/core/ActionSet.h
  75. include/plumed/core/ActionSetup.h
  76. include/plumed/core/ActionShortcut.h
  77. include/plumed/core/ActionWithArguments.h
  78. include/plumed/core/ActionWithValue.h
  79. include/plumed/core/ActionWithVirtualAtom.h
  80. include/plumed/core/Atoms.h
  81. include/plumed/core/CLTool.h
  82. include/plumed/core/CLToolMain.h
  83. include/plumed/core/CLToolRegister.h
  84. include/plumed/core/Colvar.h
  85. include/plumed/core/DataFetchingObject.h
  86. include/plumed/core/ExchangePatterns.h
  87. include/plumed/core/FlexibleBin.h
  88. include/plumed/core/GREX.h
  89. include/plumed/core/GenericMolInfo.h
  90. include/plumed/core/MDAtoms.h
  91. include/plumed/core/PlumedMain.h
  92. include/plumed/core/PlumedMainInitializer.h
  93. include/plumed/core/TargetDist.h
  94. include/plumed/core/Value.h
  95. include/plumed/core/WithCmd.h
  96. include/plumed/function/ActionRegister.h
  97. include/plumed/function/Function.h
  98. include/plumed/gridtools/ActionWithGrid.h
  99. include/plumed/gridtools/ActionWithInputGrid.h
  100. include/plumed/gridtools/ActionWithIntegral.h
  101. include/plumed/gridtools/AverageOnGrid.h
  102. include/plumed/gridtools/ContourFindingBase.h
  103. include/plumed/gridtools/GridPrintingBase.h
  104. include/plumed/gridtools/GridSearch.h
  105. include/plumed/gridtools/GridVessel.h
  106. include/plumed/gridtools/HistogramOnGrid.h
  107. include/plumed/isdb/MetainferenceBase.h
  108. include/plumed/lapack/def_external.h
  109. include/plumed/lapack/def_internal.h
  110. include/plumed/lapack/lapack.h
  111. include/plumed/lapack/lapack_limits.h
  112. include/plumed/lapack/real.h
  113. include/plumed/lepton/CompiledExpression.h
  114. include/plumed/lepton/CustomFunction.h
  115. include/plumed/lepton/Exception.h
  116. include/plumed/lepton/ExpressionProgram.h
  117. include/plumed/lepton/ExpressionTreeNode.h
  118. include/plumed/lepton/Lepton.h
  119. include/plumed/lepton/MSVC_erfc.h
  120. include/plumed/lepton/Operation.h
  121. include/plumed/lepton/ParsedExpression.h
  122. include/plumed/lepton/Parser.h
  123. include/plumed/lepton/windowsIncludes.h
  124. include/plumed/mapping/Mapping.h
  125. include/plumed/mapping/PathBase.h
  126. include/plumed/mapping/PathReparameterization.h
  127. include/plumed/mapping/TrigonometricPathVessel.h
  128. include/plumed/molfile/Gromacs.h
  129. include/plumed/molfile/endianswap.h
  130. include/plumed/molfile/fastio.h
  131. include/plumed/molfile/largefiles.h
  132. include/plumed/molfile/libmolfile_plugin.h
  133. include/plumed/molfile/molfile_plugin.h
  134. include/plumed/molfile/periodic_table.h
  135. include/plumed/molfile/readpdb.h
  136. include/plumed/molfile/vmdplugin.h
  137. include/plumed/multicolvar/ActionVolume.h
  138. include/plumed/multicolvar/AtomValuePack.h
  139. include/plumed/multicolvar/BridgedMultiColvarFunction.h
  140. include/plumed/multicolvar/CatomPack.h
  141. include/plumed/multicolvar/MultiColvarBase.h
  142. include/plumed/multicolvar/MultiColvarFilter.h
  143. include/plumed/multicolvar/VolumeGradientBase.h
  144. include/plumed/reference/ArgumentOnlyDistance.h
  145. include/plumed/reference/DRMSD.h
  146. include/plumed/reference/Direction.h
  147. include/plumed/reference/FakeFrame.h
  148. include/plumed/reference/MetricRegister.h
  149. include/plumed/reference/MultiDomainRMSD.h
  150. include/plumed/reference/RMSDBase.h
  151. include/plumed/reference/ReferenceArguments.h
  152. include/plumed/reference/ReferenceAtoms.h
  153. include/plumed/reference/ReferenceConfiguration.h
  154. include/plumed/reference/ReferenceValuePack.h
  155. include/plumed/reference/SingleDomainRMSD.h
  156. include/plumed/secondarystructure/SecondaryStructureRMSD.h
  157. include/plumed/setup/ActionSetup.h
  158. include/plumed/tools/Angle.h
  159. include/plumed/tools/AtomNumber.h
  160. include/plumed/tools/BiasRepresentation.h
  161. include/plumed/tools/Brent1DRootSearch.h
  162. include/plumed/tools/Citations.h
  163. include/plumed/tools/Communicator.h
  164. include/plumed/tools/ConjugateGradient.h
  165. include/plumed/tools/DLLoader.h
  166. include/plumed/tools/DynamicList.h
  167. include/plumed/tools/ERMSD.h
  168. include/plumed/tools/Exception.h
  169. include/plumed/tools/File.h
  170. include/plumed/tools/FileBase.h
  171. include/plumed/tools/ForwardDecl.h
  172. include/plumed/tools/Grid.h
  173. include/plumed/tools/HistogramBead.h
  174. include/plumed/tools/IFile.h
  175. include/plumed/tools/KernelFunctions.h
  176. include/plumed/tools/Keywords.h
  177. include/plumed/tools/LatticeReduction.h
  178. include/plumed/tools/LinkCells.h
  179. include/plumed/tools/Log.h
  180. include/plumed/tools/LoopUnroller.h
  181. include/plumed/tools/Matrix.h
  182. include/plumed/tools/MatrixSquareBracketsAccess.h
  183. include/plumed/tools/Minimise1DBrent.h
  184. include/plumed/tools/MinimiseBase.h
  185. include/plumed/tools/MolDataClass.h
  186. include/plumed/tools/MultiValue.h
  187. include/plumed/tools/NeighborList.h
  188. include/plumed/tools/OFile.h
  189. include/plumed/tools/OpenMP.h
  190. include/plumed/tools/PDB.h
  191. include/plumed/tools/Pbc.h
  192. include/plumed/tools/PlumedHandle.h
  193. include/plumed/tools/RMSD.h
  194. include/plumed/tools/Random.h
  195. include/plumed/tools/RootFindingBase.h
  196. include/plumed/tools/Stopwatch.h
  197. include/plumed/tools/Subprocess.h
  198. include/plumed/tools/SwitchingFunction.h
  199. include/plumed/tools/Tensor.h
  200. include/plumed/tools/Tools.h
  201. include/plumed/tools/Torsion.h
  202. include/plumed/tools/Tree.h
  203. include/plumed/tools/TypesafePtr.h
  204. include/plumed/tools/Units.h
  205. include/plumed/tools/Vector.h
  206. include/plumed/tools/h36.h
  207. include/plumed/vatom/ActionRegister.h
  208. include/plumed/vatom/ActionWithVirtualAtom.h
  209. include/plumed/vesselbase/ActionWithAveraging.h
  210. include/plumed/vesselbase/ActionWithInputVessel.h
  211. include/plumed/vesselbase/ActionWithVessel.h
  212. include/plumed/vesselbase/AveragingVessel.h
  213. include/plumed/vesselbase/Between.h
  214. include/plumed/vesselbase/BridgeVessel.h
  215. include/plumed/vesselbase/FunctionVessel.h
  216. include/plumed/vesselbase/LessThan.h
  217. include/plumed/vesselbase/OrderingVessel.h
  218. include/plumed/vesselbase/ShortcutVessel.h
  219. include/plumed/vesselbase/StoreDataVessel.h
  220. include/plumed/vesselbase/ValueVessel.h
  221. include/plumed/vesselbase/Vessel.h
  222. include/plumed/vesselbase/VesselRegister.h
  223. include/plumed/wrapper/Plumed.h
  224. include/plumed/xdrfile/xdrfile.h
  225. include/plumed/xdrfile/xdrfile_trr.h
  226. include/plumed/xdrfile/xdrfile_xtc.h
  227. lib/libplumed.a
  228. lib/libplumed.so
  229. lib/libplumedKernel.so
  230. lib/libplumedWrapper.a
  231. lib/plumed/fortran/plumed.f90
  232. lib/plumed/fortran/plumed_f08.f90
  233. lib/plumed/modulefile
  234. lib/plumed/patches/gromacs-2019.6.config
  235. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/CMakeLists.txt
  236. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/CMakeLists.txt.preplumed
  237. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdlib/force.cpp
  238. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdlib/force.cpp.preplumed
  239. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  240. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  241. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.h
  242. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  243. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/md.cpp
  244. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/md.cpp.preplumed
  245. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/minimize.cpp
  246. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  247. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.cpp
  248. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  249. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.h
  250. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  251. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/runner.cpp
  252. lib/plumed/patches/gromacs-2019.6.diff/src/gromacs/mdrun/runner.cpp.preplumed
  253. lib/plumed/patches/gromacs-2020.6.config
  254. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/CMakeLists.txt
  255. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/CMakeLists.txt.preplumed
  256. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.cpp
  257. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.cpp.preplumed
  258. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.h
  259. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/expanded.h.preplumed
  260. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/force.cpp
  261. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdlib/force.cpp.preplumed
  262. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  263. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  264. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.h
  265. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  266. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/md.cpp
  267. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/md.cpp.preplumed
  268. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/minimize.cpp
  269. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  270. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.cpp
  271. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  272. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.h
  273. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  274. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/runner.cpp
  275. lib/plumed/patches/gromacs-2020.6.diff/src/gromacs/mdrun/runner.cpp.preplumed
  276. lib/plumed/patches/gromacs-2021.4.config
  277. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/CMakeLists.txt
  278. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/CMakeLists.txt.preplumed
  279. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.cpp
  280. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.cpp.preplumed
  281. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.h
  282. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/expanded.h.preplumed
  283. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/sim_util.cpp
  284. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdlib/sim_util.cpp.preplumed
  285. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.cpp
  286. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.cpp.preplumed
  287. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.h
  288. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/legacymdrunoptions.h.preplumed
  289. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/md.cpp
  290. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/md.cpp.preplumed
  291. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/minimize.cpp
  292. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/minimize.cpp.preplumed
  293. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.cpp
  294. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.cpp.preplumed
  295. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.h
  296. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/replicaexchange.h.preplumed
  297. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/runner.cpp
  298. lib/plumed/patches/gromacs-2021.4.diff/src/gromacs/mdrun/runner.cpp.preplumed
  299. lib/plumed/patches/gromacs-4.5.7.config
  300. lib/plumed/patches/gromacs-4.5.7.diff
  301. lib/plumed/patches/namd-2.12.config
  302. lib/plumed/patches/namd-2.12.diff
  303. lib/plumed/patches/namd-2.13.config
  304. lib/plumed/patches/namd-2.13.diff
  305. lib/plumed/patches/namd-2.14.config
  306. lib/plumed/patches/namd-2.14.diff
  307. lib/plumed/patches/patch.sh
  308. lib/plumed/patches/qespresso-5.0.2.config
  309. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90
  310. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/forces.f90.preplumed
  311. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90
  312. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_forces.f90.preplumed
  313. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90
  314. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/plugin_initialization.f90.preplumed
  315. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90
  316. lib/plumed/patches/qespresso-5.0.2.diff/PW/src/pwscf.f90.preplumed
  317. lib/plumed/patches/qespresso-6.2.config
  318. lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90
  319. lib/plumed/patches/qespresso-6.2.diff/PW/src/forces.f90.preplumed
  320. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90
  321. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_ext_forces.f90.preplumed
  322. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90
  323. lib/plumed/patches/qespresso-6.2.diff/PW/src/plugin_initialization.f90.preplumed
  324. lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90
  325. lib/plumed/patches/qespresso-6.2.diff/PW/src/run_pwscf.f90.preplumed
  326. lib/plumed/plumed-config
  327. lib/plumed/plumed-mklib
  328. lib/plumed/plumed-newcv
  329. lib/plumed/plumed-partial_tempering
  330. lib/plumed/plumed-patch
  331. lib/plumed/plumed-runtime
  332. lib/plumed/plumed-selector
  333. lib/plumed/plumed-vim2html
  334. lib/plumed/scripts/config.sh
  335. lib/plumed/scripts/mklib.sh
  336. lib/plumed/scripts/newcv.sh
  337. lib/plumed/scripts/partial_tempering.sh
  338. lib/plumed/scripts/patch.sh
  339. lib/plumed/scripts/selector.sh
  340. lib/plumed/scripts/vim2html.sh
  341. lib/plumed/src/colvar/Template.cpp
  342. lib/plumed/src/config/compile_options.sh
  343. lib/plumed/src/config/config.txt
  344. lib/plumed/src/lib/Plumed.cmake
  345. lib/plumed/src/lib/Plumed.cmake.runtime
  346. lib/plumed/src/lib/Plumed.cmake.shared
  347. lib/plumed/src/lib/Plumed.cmake.static
  348. lib/plumed/src/lib/Plumed.inc
  349. lib/plumed/src/lib/Plumed.inc.runtime
  350. lib/plumed/src/lib/Plumed.inc.shared
  351. lib/plumed/src/lib/Plumed.inc.static
  352. lib/plumed/vim/help/ABMD.txt
  353. lib/plumed/vim/help/ADAPTIVE_PATH.txt
  354. lib/plumed/vim/help/ALPHABETA.txt
  355. lib/plumed/vim/help/ALPHARMSD.txt
  356. lib/plumed/vim/help/ANGLE.txt
  357. lib/plumed/vim/help/ANGLES.txt
  358. lib/plumed/vim/help/ANTIBETARMSD.txt
  359. lib/plumed/vim/help/AROUND.txt
  360. lib/plumed/vim/help/AVERAGE.txt
  361. lib/plumed/vim/help/BIASVALUE.txt
  362. lib/plumed/vim/help/BRIDGE.txt
  363. lib/plumed/vim/help/CALIBER.txt
  364. lib/plumed/vim/help/CAVITY.txt
  365. lib/plumed/vim/help/CELL.txt
  366. lib/plumed/vim/help/CENTER.txt
  367. lib/plumed/vim/help/CENTER_OF_MULTICOLVAR.txt
  368. lib/plumed/vim/help/COLLECT_FRAMES.txt
  369. lib/plumed/vim/help/COM.txt
  370. lib/plumed/vim/help/COMBINE.txt
  371. lib/plumed/vim/help/COMMITTOR.txt
  372. lib/plumed/vim/help/CONSTANT.txt
  373. lib/plumed/vim/help/CONTACTMAP.txt
  374. lib/plumed/vim/help/CONVERT_TO_FES.txt
  375. lib/plumed/vim/help/COORDINATION.txt
  376. lib/plumed/vim/help/COORDINATIONNUMBER.txt
  377. lib/plumed/vim/help/CS2BACKBONE.txt
  378. lib/plumed/vim/help/CUSTOM.txt
  379. lib/plumed/vim/help/DEBUG.txt
  380. lib/plumed/vim/help/DENSITY.txt
  381. lib/plumed/vim/help/DHENERGY.txt
  382. lib/plumed/vim/help/DIHCOR.txt
  383. lib/plumed/vim/help/DIMER.txt
  384. lib/plumed/vim/help/DIPOLE.txt
  385. lib/plumed/vim/help/DISTANCE.txt
  386. lib/plumed/vim/help/DISTANCES.txt
  387. lib/plumed/vim/help/DISTANCE_FROM_CONTOUR.txt
  388. lib/plumed/vim/help/DRMSD.txt
  389. lib/plumed/vim/help/DUMPATOMS.txt
  390. lib/plumed/vim/help/DUMPCUBE.txt
  391. lib/plumed/vim/help/DUMPDERIVATIVES.txt
  392. lib/plumed/vim/help/DUMPFORCES.txt
  393. lib/plumed/vim/help/DUMPGRID.txt
  394. lib/plumed/vim/help/DUMPMASSCHARGE.txt
  395. lib/plumed/vim/help/DUMPMULTICOLVAR.txt
  396. lib/plumed/vim/help/DUMPPROJECTIONS.txt
  397. lib/plumed/vim/help/EEFSOLV.txt
  398. lib/plumed/vim/help/EFFECTIVE_ENERGY_DRIFT.txt
  399. lib/plumed/vim/help/EMMI.txt
  400. lib/plumed/vim/help/ENDPLUMED.txt
  401. lib/plumed/vim/help/ENERGY.txt
  402. lib/plumed/vim/help/ENSEMBLE.txt
  403. lib/plumed/vim/help/ERMSD.txt
  404. lib/plumed/vim/help/EUCLIDEAN_DISSIMILARITIES.txt
  405. lib/plumed/vim/help/EXTENDED_LAGRANGIAN.txt
  406. lib/plumed/vim/help/EXTERNAL.txt
  407. lib/plumed/vim/help/EXTRACV.txt
  408. lib/plumed/vim/help/FAKE.txt
  409. lib/plumed/vim/help/FIND_CONTOUR.txt
  410. lib/plumed/vim/help/FIND_CONTOUR_SURFACE.txt
  411. lib/plumed/vim/help/FIND_SPHERICAL_CONTOUR.txt
  412. lib/plumed/vim/help/FIT_TO_TEMPLATE.txt
  413. lib/plumed/vim/help/FIXEDATOM.txt
  414. lib/plumed/vim/help/FLUSH.txt
  415. lib/plumed/vim/help/FOURIER_TRANSFORM.txt
  416. lib/plumed/vim/help/FRET.txt
  417. lib/plumed/vim/help/FUNCPATHGENERAL.txt
  418. lib/plumed/vim/help/FUNCPATHMSD.txt
  419. lib/plumed/vim/help/FUNCSUMHILLS.txt
  420. lib/plumed/vim/help/GHBFIX.txt
  421. lib/plumed/vim/help/GHOST.txt
  422. lib/plumed/vim/help/GPROPERTYMAP.txt
  423. lib/plumed/vim/help/GRID_TO_XYZ.txt
  424. lib/plumed/vim/help/GROUP.txt
  425. lib/plumed/vim/help/GYRATION.txt
  426. lib/plumed/vim/help/HISTOGRAM.txt
  427. lib/plumed/vim/help/INCLUDE.txt
  428. lib/plumed/vim/help/INCYLINDER.txt
  429. lib/plumed/vim/help/INENVELOPE.txt
  430. lib/plumed/vim/help/INPLANEDISTANCES.txt
  431. lib/plumed/vim/help/INSPHERE.txt
  432. lib/plumed/vim/help/INTEGRATE_GRID.txt
  433. lib/plumed/vim/help/INTERPOLATE_GRID.txt
  434. lib/plumed/vim/help/JCOUPLING.txt
  435. lib/plumed/vim/help/LANDMARK_SELECT_FPS.txt
  436. lib/plumed/vim/help/LANDMARK_SELECT_RANDOM.txt
  437. lib/plumed/vim/help/LANDMARK_SELECT_STAGED.txt
  438. lib/plumed/vim/help/LANDMARK_SELECT_STRIDE.txt
  439. lib/plumed/vim/help/LOAD.txt
  440. lib/plumed/vim/help/LOCALENSEMBLE.txt
  441. lib/plumed/vim/help/LOCAL_AVERAGE.txt
  442. lib/plumed/vim/help/LOWER_WALLS.txt
  443. lib/plumed/vim/help/MATHEVAL.txt
  444. lib/plumed/vim/help/MAXENT.txt
  445. lib/plumed/vim/help/MCOLV_COMBINE.txt
  446. lib/plumed/vim/help/MCOLV_PRODUCT.txt
  447. lib/plumed/vim/help/METAD.txt
  448. lib/plumed/vim/help/METAINFERENCE.txt
  449. lib/plumed/vim/help/MFILTER_BETWEEN.txt
  450. lib/plumed/vim/help/MFILTER_LESS.txt
  451. lib/plumed/vim/help/MFILTER_MORE.txt
  452. lib/plumed/vim/help/MOLINFO.txt
  453. lib/plumed/vim/help/MOVINGRESTRAINT.txt
  454. lib/plumed/vim/help/MTRANSFORM_BETWEEN.txt
  455. lib/plumed/vim/help/MTRANSFORM_LESS.txt
  456. lib/plumed/vim/help/MTRANSFORM_MORE.txt
  457. lib/plumed/vim/help/MULTICOLVARDENS.txt
  458. lib/plumed/vim/help/MULTI_RMSD.txt
  459. lib/plumed/vim/help/NLINKS.txt
  460. lib/plumed/vim/help/NOE.txt
  461. lib/plumed/vim/help/OUTPUT_ANALYSIS_DATA_TO_COLVAR.txt
  462. lib/plumed/vim/help/OUTPUT_ANALYSIS_DATA_TO_PDB.txt
  463. lib/plumed/vim/help/PARABETARMSD.txt
  464. lib/plumed/vim/help/PATH.txt
  465. lib/plumed/vim/help/PATHMSD.txt
  466. lib/plumed/vim/help/PBMETAD.txt
  467. lib/plumed/vim/help/PCARMSD.txt
  468. lib/plumed/vim/help/PCAVARS.txt
  469. lib/plumed/vim/help/PCS.txt
  470. lib/plumed/vim/help/PIECEWISE.txt
  471. lib/plumed/vim/help/PLUMED.txt
  472. lib/plumed/vim/help/POSITION.txt
  473. lib/plumed/vim/help/PRE.txt
  474. lib/plumed/vim/help/PRINT.txt
  475. lib/plumed/vim/help/PRINT_DISSIMILARITY_MATRIX.txt
  476. lib/plumed/vim/help/PROJECTION_ON_AXIS.txt
  477. lib/plumed/vim/help/PROPERTYMAP.txt
  478. lib/plumed/vim/help/PUCKERING.txt
  479. lib/plumed/vim/help/RANDOM_EXCHANGES.txt
  480. lib/plumed/vim/help/RDC.txt
  481. lib/plumed/vim/help/READ.txt
  482. lib/plumed/vim/help/READ_DISSIMILARITY_MATRIX.txt
  483. lib/plumed/vim/help/RESCALE.txt
  484. lib/plumed/vim/help/RESELECT_LANDMARKS.txt
  485. lib/plumed/vim/help/RESET_CELL.txt
  486. lib/plumed/vim/help/RESTART.txt
  487. lib/plumed/vim/help/RESTRAINT.txt
  488. lib/plumed/vim/help/REWEIGHT_BIAS.txt
  489. lib/plumed/vim/help/REWEIGHT_METAD.txt
  490. lib/plumed/vim/help/REWEIGHT_TEMP_PRESS.txt
  491. lib/plumed/vim/help/REWEIGHT_WHAM.txt
  492. lib/plumed/vim/help/RMSD.txt
  493. lib/plumed/vim/help/SAXS.txt
  494. lib/plumed/vim/help/SELECT.txt
  495. lib/plumed/vim/help/SELECTOR.txt
  496. lib/plumed/vim/help/SORT.txt
  497. lib/plumed/vim/help/STATS.txt
  498. lib/plumed/vim/help/TARGET.txt
  499. lib/plumed/vim/help/TEMPLATE.txt
  500. lib/plumed/vim/help/TETRAHEDRALPORE.txt
  501. lib/plumed/vim/help/TIME.txt
  502. lib/plumed/vim/help/TORSION.txt
  503. lib/plumed/vim/help/TORSIONS.txt
  504. lib/plumed/vim/help/UNITS.txt
  505. lib/plumed/vim/help/UPDATE_IF.txt
  506. lib/plumed/vim/help/UPPER_WALLS.txt
  507. lib/plumed/vim/help/VOLUME.txt
  508. lib/plumed/vim/help/WHAM_HISTOGRAM.txt
  509. lib/plumed/vim/help/WHAM_WEIGHTS.txt
  510. lib/plumed/vim/help/WHOLEMOLECULES.txt
  511. lib/plumed/vim/help/WRAPAROUND.txt
  512. lib/plumed/vim/help/XANGLES.txt
  513. lib/plumed/vim/help/XDISTANCES.txt
  514. lib/plumed/vim/help/XYDISTANCES.txt
  515. lib/plumed/vim/help/XYTORSIONS.txt
  516. lib/plumed/vim/help/XZDISTANCES.txt
  517. lib/plumed/vim/help/XZTORSIONS.txt
  518. lib/plumed/vim/help/YANGLES.txt
  519. lib/plumed/vim/help/YDISTANCES.txt
  520. lib/plumed/vim/help/YXTORSIONS.txt
  521. lib/plumed/vim/help/YZDISTANCES.txt
  522. lib/plumed/vim/help/YZTORSIONS.txt
  523. lib/plumed/vim/help/ZANGLES.txt
  524. lib/plumed/vim/help/ZDISTANCES.txt
  525. lib/plumed/vim/help/ZXTORSIONS.txt
  526. lib/plumed/vim/help/ZYTORSIONS.txt
  527. lib/plumed/vim/scripts.vim
  528. lib/plumed/vim/syntax/plumed.vim
  529. lib/plumed/vim/syntax/plumedf.vim
  530. libdata/pkgconfig/plumed.pc
  531. libdata/pkgconfig/plumedInternals.pc
  532. libdata/pkgconfig/plumedWrapper.pc
  533. @owner
  534. @group
  535. @mode
Collapse this list.
Dependency lines:
  • plumed>0:science/plumed
To install the port:
cd /usr/ports/science/plumed/ && make install clean
To add the package, run one of these commands:
  • pkg install science/plumed
  • pkg install plumed
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: plumed
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
plumed
ABIlatestquarterly
FreeBSD:11:aarch64-2.6.0
FreeBSD:11:amd642.7.22.7.1
FreeBSD:11:armv6-2.6.0
FreeBSD:11:i386--
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-2.8.0
FreeBSD:12:amd642.8.02.8.0
FreeBSD:12:armv6-2.6.1
FreeBSD:12:armv7-2.6.1
FreeBSD:12:i386--
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-2.7.0
FreeBSD:13:aarch642.8.02.8.0
FreeBSD:13:amd642.8.02.8.0
FreeBSD:13:armv62.7.0-
FreeBSD:13:armv72.8.02.8.0
FreeBSD:13:i386--
FreeBSD:13:mips--
FreeBSD:13:mips642.7.02.7.0
FreeBSD:13:powerpc642.7.02.7.1
FreeBSD:13:riscv64--
FreeBSD:14:aarch642.8.0-
FreeBSD:14:amd642.8.0-
FreeBSD:14:armv6--
FreeBSD:14:armv72.8.0-
FreeBSD:14:i386--
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc642.7.0-
FreeBSD:14:riscv642.7.2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. gmake>=4.3 : devel/gmake
  3. pkgconf>=1.3.0_1 : devel/pkgconf
  4. autoconf>=2.69 : devel/autoconf
  5. automake>=1.16.1 : devel/automake
Runtime dependencies:
  1. bash : shells/bash
Library dependencies:
  1. libblas.so : math/blas
  2. libfftw3.so : math/fftw3
  3. libgsl.so : math/gsl
  4. liblapack.so : math/lapack
This port is required by:
for Libraries
  1. science/dftbplus
  2. science/lammps

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://github.com/plumed/plumed2/releases/download/v2.8.0/
Collapse this list.

Number of commits found: 17

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
23 May 2022 11:39:54
 files touched by this commit commit hash:8560babc8acaaf83032e9549b8953c7bfd1677b7  2.8.0
Daniel Engberg (diizzy) search for other commits by this committer
science/plumed: Use upsteam release archive

Use upstream release archive as recommended by Porters Handbook

PR:		264023
Approved by:	yuri (maintainer)
23 Feb 2022 17:02:06
 files touched by this commit commit hash:265b2b6c62dd4a18440d88bf62ecb21034f29b87  2.8.0
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.8b -> 2.8.0

Reported by:	portscout
12 Jan 2022 19:41:22
 files touched by this commit commit hash:654acd81409d31495f8b1b11db61e1afbf640981  2.8.b_2
Tobias C. Berner (tcberner) search for other commits by this committer
math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201
05 Jan 2022 01:31:24
 files touched by this commit commit hash:521a9557f0bb69046cffd25dfd76a3ff3798bd99  2.8.b_1
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Add missing dependencies and binary alias which fixes most
tests.
04 Jan 2022 22:30:11
 files touched by this commit commit hash:29c3e2e6e1de61d7811499849a3755aa5e40bbdb  2.8.b
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Fix the test target
04 Jan 2022 07:11:22
 files touched by this commit commit hash:1e450a952cb8dcc8270dbb1d5fee8e301d39d98e  2.8.b
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.2 -> 2.8b
02 Sep 2021 18:09:29
 files touched by this commit commit hash:58f45200bc83594c793dab6d1bb65347f061c6bf  2.7.2
Adam Weinberger (adamw) search for other commits by this committer
many: Depend on vim instead of vim-console
28 Jul 2021 17:13:47
 files touched by this commit commit hash:3ab9c7e06555a6f9c6e28b1016ab432af6a2c7c3  2.7.2
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.1 -> 2.7.2

Reported by:	portscout
17 Apr 2021 04:00:57
 files touched by this commit commit hash:70eb5bbeb0ab2c8f4cf1ece3242eb552db1f1c3a  2.7.1
Yuri Victorovich (yuri) search for other commits by this committer
science/plumed: Update 2.7.0 -> 2.7.1

Reported by:	portscout
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  2.7.0
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  2.7.0
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
03 Jan 2021 06:32:47
Original commit files touched by this commit Revision:559994  2.7.0
yuri search for other commits by this committer
science/plumed: Update 2.6.2 -> 2.7.0

Reported by:	portscout
28 Oct 2020 01:33:15
Original commit files touched by this commit Revision:553521  2.6.2
yuri search for other commits by this committer
science/plumed: Update 2.6.1 -> 2.6.2

Reported by:	portscout
16 Jul 2020 19:51:31
Original commit files touched by this commit Revision:542385  2.6.1
yuri search for other commits by this committer
science/plumed: Update 2.6.0 -> 2.6.1

Reported by:	portscout
23 May 2020 21:59:28
Original commit files touched by this commit Revision:536357  2.6.0
yuri search for other commits by this committer
science/plumed: Broken on i386

Reported by:	fallout
06 May 2020 12:00:53
Original commit files touched by this commit Revision:534167  2.6.0
linimon search for other commits by this committer
Add compiler:c++11-lang to USES to fix build on GCC-based systems:

  core/../../core/tools/../../tools/Vector.h:27:17: error: array: No such file
or directory
04 May 2020 19:55:51
Original commit files touched by this commit Revision:533981  2.6.0
yuri search for other commits by this committer
New port: science/plumed: PLUgin for MolEcular Dynamics

Number of commits found: 17