notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Ukraine
Some details on the 2023-01-16 website outage.
We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
openstructure Molecular modelling and visualization environment
1.7.1_10 science Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Qt4 has been EOL since december 2015
Expired This port expired on: 2019-03-15
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-09 04:41:37
Last Update: 2019-03-16 21:55:51
SVN Revision: 495967
License: LGPL3
Description:
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (968 items)
Collapse this list.
  1. /usr/local/share/licenses/openstructure-1.7.1_10/catalog.mk
  2. /usr/local/share/licenses/openstructure-1.7.1_10/LICENSE
  3. /usr/local/share/licenses/openstructure-1.7.1_10/LGPL3
  4. bin/chemdict_tool
  5. bin/dng
  6. bin/lddt
  7. bin/molck
  8. bin/ost
  9. include/ost/base.hh
  10. include/ost/boost_filesystem_helper.hh
  11. include/ost/config.hh
  12. include/ost/conop/amino_acids.hh
  13. include/ost/conop/compound.hh
  14. include/ost/conop/compound_lib.hh
  15. include/ost/conop/compound_lib_base.hh
  16. include/ost/conop/conop.hh
  17. include/ost/conop/diag.hh
  18. include/ost/conop/heuristic.hh
  19. include/ost/conop/minimal_compound_lib.hh
  20. include/ost/conop/model_check.hh
  21. include/ost/conop/module_config.hh
  22. include/ost/conop/nonstandard.hh
  23. include/ost/conop/processor.hh
  24. include/ost/conop/ring_finder.hh
  25. include/ost/conop/rule_based.hh
  26. include/ost/db/module_config.hh
  27. include/ost/db/sqlite3.h
  28. include/ost/db/sqlite_conv.hh
  29. include/ost/db/sqlite_wrap.hh
  30. include/ost/dllexport.hh
  31. include/ost/dyn_cast.hh
  32. include/ost/export_helper/generic_property_def.hh
  33. include/ost/export_helper/pair_to_tuple_conv.hh
  34. include/ost/export_helper/vec_to_list_conv.hh
  35. include/ost/fixed_string.hh
  36. include/ost/generic_property.hh
  37. include/ost/geom/aligned_cuboid.hh
  38. include/ost/geom/circular_iterator.hh
  39. include/ost/geom/composite.hh
  40. include/ost/geom/composite2.hh
  41. include/ost/geom/composite2_op.hh
  42. include/ost/geom/composite3.hh
  43. include/ost/geom/composite3_op.hh
  44. include/ost/geom/composite_op.hh
  45. include/ost/geom/constants.hh
  46. include/ost/geom/def.hh
  47. include/ost/geom/exc.hh
  48. include/ost/geom/export_helper/vector.hh
  49. include/ost/geom/geom.hh
  50. include/ost/geom/mat.hh
  51. include/ost/geom/mat2.hh
  52. include/ost/geom/mat3.hh
  53. include/ost/geom/mat4.hh
  54. include/ost/geom/module_config.hh
  55. include/ost/geom/point_cloud.hh
  56. include/ost/geom/quat.hh
  57. include/ost/geom/transform.hh
  58. include/ost/geom/vec.hh
  59. include/ost/geom/vec2.hh
  60. include/ost/geom/vec3.hh
  61. include/ost/geom/vec4.hh
  62. include/ost/geom/vec_mat_predicates.hh
  63. include/ost/geom/vecmat2_op.hh
  64. include/ost/geom/vecmat3_op.hh
  65. include/ost/geom/vecmat4_op.hh
  66. include/ost/geom/vecmat_op.hh
  67. include/ost/gfx/bitmap_io.hh
  68. include/ost/gfx/collada_exporter.hh
  69. include/ost/gfx/color.hh
  70. include/ost/gfx/color_ops/basic_gradient_color_op.hh
  71. include/ost/gfx/color_ops/by_chain_color_op.hh
  72. include/ost/gfx/color_ops/by_element_color_op.hh
  73. include/ost/gfx/color_ops/color_op.hh
  74. include/ost/gfx/color_ops/entity_view_color_op.hh
  75. include/ost/gfx/color_ops/gradient_color_op.hh
  76. include/ost/gfx/color_ops/gradient_level_color_op.hh
  77. include/ost/gfx/color_ops/map_handle_color_op.hh
  78. include/ost/gfx/color_ops/uniform_color_op.hh
  79. include/ost/gfx/entity.hh
  80. include/ost/gfx/entity_fw.hh
  81. include/ost/gfx/exporter.hh
  82. include/ost/gfx/exporter_fw.hh
  83. include/ost/gfx/gfx.hh
  84. include/ost/gfx/gfx_fw.hh
  85. include/ost/gfx/gfx_node.hh
  86. include/ost/gfx/gfx_node_fw.hh
  87. include/ost/gfx/gfx_node_visitor.hh
  88. include/ost/gfx/gfx_object.hh
  89. include/ost/gfx/gfx_object_base.hh
  90. include/ost/gfx/gfx_object_fw.hh
  91. include/ost/gfx/gfx_prim.hh
  92. include/ost/gfx/gfx_test_object.hh
  93. include/ost/gfx/gl_helper.hh
  94. include/ost/gfx/gl_include.hh
  95. include/ost/gfx/glext_include.hh
  96. include/ost/gfx/glwin_base.hh
  97. include/ost/gfx/gost_exporter.hh
  98. include/ost/gfx/gradient.hh
  99. include/ost/gfx/gradient_manager.hh
  100. include/ost/gfx/impl/backbone_trace.hh
  101. include/ost/gfx/impl/cartoon_renderer.hh
  102. include/ost/gfx/impl/connect_renderer_base.hh
  103. include/ost/gfx/impl/cpk_renderer.hh
  104. include/ost/gfx/impl/custom_renderer.hh
  105. include/ost/gfx/impl/debug_renderer.hh
  106. include/ost/gfx/impl/entity_detail.hh
  107. include/ost/gfx/impl/entity_renderer.hh
  108. include/ost/gfx/impl/entity_renderer_fw.hh
  109. include/ost/gfx/impl/fast_spheres.hh
  110. include/ost/gfx/impl/glx_offscreen_buffer.hh
  111. include/ost/gfx/impl/line_trace_renderer.hh
  112. include/ost/gfx/impl/map_iso_gen.hh
  113. include/ost/gfx/impl/map_iso_gen_s.hh
  114. include/ost/gfx/impl/map_iso_spec.hh
  115. include/ost/gfx/impl/map_octree.hh
  116. include/ost/gfx/impl/mapped_property.hh
  117. include/ost/gfx/impl/octree_isocont.hh
  118. include/ost/gfx/impl/simple_renderer.hh
  119. include/ost/gfx/impl/sline_renderer.hh
  120. include/ost/gfx/impl/tabulated_trig.hh
  121. include/ost/gfx/impl/trace_renderer.hh
  122. include/ost/gfx/impl/trace_renderer_base.hh
  123. include/ost/gfx/input.hh
  124. include/ost/gfx/map_handle_color_op.hh
  125. include/ost/gfx/map_iso.hh
  126. include/ost/gfx/map_iso_prop.hh
  127. include/ost/gfx/map_slab.hh
  128. include/ost/gfx/material.hh
  129. include/ost/gfx/module_config.hh
  130. include/ost/gfx/offscreen_buffer.hh
  131. include/ost/gfx/povray.hh
  132. include/ost/gfx/povray_fw.hh
  133. include/ost/gfx/prim_list.hh
  134. include/ost/gfx/primitives.hh
  135. include/ost/gfx/render_mode.hh
  136. include/ost/gfx/render_options/cartoon_render_options.hh
  137. include/ost/gfx/render_options/cpk_render_options.hh
  138. include/ost/gfx/render_options/custom_render_options.hh
  139. include/ost/gfx/render_options/line_render_options.hh
  140. include/ost/gfx/render_options/line_trace_render_options.hh
  141. include/ost/gfx/render_options/render_options.hh
  142. include/ost/gfx/render_options/simple_render_options.hh
  143. include/ost/gfx/render_options/sline_render_options.hh
  144. include/ost/gfx/render_options/trace_render_options.hh
  145. include/ost/gfx/render_pass.hh
  146. include/ost/gfx/scene.hh
  147. include/ost/gfx/scene_observer.hh
  148. include/ost/gfx/selection.hh
  149. include/ost/gfx/surface.hh
  150. include/ost/gfx/symmetry_node.hh
  151. include/ost/gfx/texture.hh
  152. include/ost/gfx/vertex_array.hh
  153. include/ost/gfx/vertex_array_helper.hh
  154. include/ost/gui/admin.hh
  155. include/ost/gui/data_viewer/argand.hh
  156. include/ost/gui/data_viewer/data_viewer.hh
  157. include/ost/gui/data_viewer/data_viewer_panel.hh
  158. include/ost/gui/data_viewer/data_viewer_panel_base.hh
  159. include/ost/gui/data_viewer/draw_overlay.hh
  160. include/ost/gui/data_viewer/drawing_functions.hh
  161. include/ost/gui/data_viewer/fft_panel.hh
  162. include/ost/gui/data_viewer/img2qt.hh
  163. include/ost/gui/data_viewer/info_panel.hh
  164. include/ost/gui/data_viewer/mask_overlay.hh
  165. include/ost/gui/data_viewer/null_overlay.hh
  166. include/ost/gui/data_viewer/overlay.hh
  167. include/ost/gui/data_viewer/overlay_base.hh
  168. include/ost/gui/data_viewer/overlay_base_fw.hh
  169. include/ost/gui/data_viewer/overlay_manager.hh
  170. include/ost/gui/data_viewer/overlay_manager_fw.hh
  171. include/ost/gui/data_viewer/overlay_manager_gui.hh
  172. include/ost/gui/data_viewer/overlay_manager_observer.hh
  173. include/ost/gui/data_viewer/pointlist_overlay.hh
  174. include/ost/gui/data_viewer/pointlist_overlay_base.hh
  175. include/ost/gui/data_viewer/strategies.hh
  176. include/ost/gui/data_viewer/strategies_fw.hh
  177. include/ost/gui/data_viewer/viewer_normalizer.hh
  178. include/ost/gui/dock_widget.hh
  179. include/ost/gui/file_browser.hh
  180. include/ost/gui/file_loader.hh
  181. include/ost/gui/file_type_dialog.hh
  182. include/ost/gui/file_viewer.hh
  183. include/ost/gui/gl_canvas.hh
  184. include/ost/gui/gl_win.hh
  185. include/ost/gui/gosty_app.hh
  186. include/ost/gui/main.hh
  187. include/ost/gui/main_area.hh
  188. include/ost/gui/main_window.hh
  189. include/ost/gui/messages/log_reader.hh
  190. include/ost/gui/messages/message_box_widget.hh
  191. include/ost/gui/messages/message_widget.hh
  192. include/ost/gui/module_config.hh
  193. include/ost/gui/panels/bottom_bar.hh
  194. include/ost/gui/panels/button_bar.hh
  195. include/ost/gui/panels/button_box.hh
  196. include/ost/gui/panels/drop_box.hh
  197. include/ost/gui/panels/event_button.hh
  198. include/ost/gui/panels/panel_bar.hh
  199. include/ost/gui/panels/panel_bar_widget_holder.hh
  200. include/ost/gui/panels/panel_manager.hh
  201. include/ost/gui/panels/panel_widget_container.hh
  202. include/ost/gui/panels/side_bar.hh
  203. include/ost/gui/panels/splitter_panel_bar.hh
  204. include/ost/gui/panels/tabbed_panel_bar.hh
  205. include/ost/gui/perspective.hh
  206. include/ost/gui/python_shell/completer_base.hh
  207. include/ost/gui/python_shell/dir_model.hh
  208. include/ost/gui/python_shell/gutter.hh
  209. include/ost/gui/python_shell/main_thread_runner.hh
  210. include/ost/gui/python_shell/output_redirector.hh
  211. include/ost/gui/python_shell/path_completer.hh
  212. include/ost/gui/python_shell/python_completer.hh
  213. include/ost/gui/python_shell/python_context_parser.hh
  214. include/ost/gui/python_shell/python_interpreter.hh
  215. include/ost/gui/python_shell/python_interpreter_worker.hh
  216. include/ost/gui/python_shell/python_shell.hh
  217. include/ost/gui/python_shell/python_shell_fw.hh
  218. include/ost/gui/python_shell/python_shell_text_document_layout.hh
  219. include/ost/gui/python_shell/python_shell_widget.hh
  220. include/ost/gui/python_shell/python_syntax_highlighter.hh
  221. include/ost/gui/python_shell/python_tokenizer.hh
  222. include/ost/gui/python_shell/shell_history.hh
  223. include/ost/gui/python_shell/state.hh
  224. include/ost/gui/python_shell/state_machine.hh
  225. include/ost/gui/python_shell/text_logger.hh
  226. include/ost/gui/python_shell/transition.hh
  227. include/ost/gui/python_shell/transition_guard.hh
  228. include/ost/gui/scene_menu.hh
  229. include/ost/gui/scene_selection.hh
  230. include/ost/gui/scene_win/context_menu.hh
  231. include/ost/gui/scene_win/current_selection_node.hh
  232. include/ost/gui/scene_win/custom_part_node.hh
  233. include/ost/gui/scene_win/entity_node.hh
  234. include/ost/gui/scene_win/entity_part_node.hh
  235. include/ost/gui/scene_win/gfx_scene_node.hh
  236. include/ost/gui/scene_win/label_node.hh
  237. include/ost/gui/scene_win/render_mode_node.hh
  238. include/ost/gui/scene_win/render_modes_node.hh
  239. include/ost/gui/scene_win/root_node.hh
  240. include/ost/gui/scene_win/scene_node.hh
  241. include/ost/gui/scene_win/scene_win.hh
  242. include/ost/gui/scene_win/scene_win_model.hh
  243. include/ost/gui/sequence_viewer/align_properties_painter.hh
  244. include/ost/gui/sequence_viewer/alignment_view_object.hh
  245. include/ost/gui/sequence_viewer/background_painter.hh
  246. include/ost/gui/sequence_viewer/base_row.hh
  247. include/ost/gui/sequence_viewer/base_view_object.hh
  248. include/ost/gui/sequence_viewer/conservation_painter.hh
  249. include/ost/gui/sequence_viewer/painter.hh
  250. include/ost/gui/sequence_viewer/secstr_row.hh
  251. include/ost/gui/sequence_viewer/seq_secstr_painter.hh
  252. include/ost/gui/sequence_viewer/seq_selection_painter.hh
  253. include/ost/gui/sequence_viewer/seq_text_painter.hh
  254. include/ost/gui/sequence_viewer/sequence_delegate.hh
  255. include/ost/gui/sequence_viewer/sequence_model.hh
  256. include/ost/gui/sequence_viewer/sequence_row.hh
  257. include/ost/gui/sequence_viewer/sequence_search_bar.hh
  258. include/ost/gui/sequence_viewer/sequence_table_view.hh
  259. include/ost/gui/sequence_viewer/sequence_view_object.hh
  260. include/ost/gui/sequence_viewer/sequence_viewer.hh
  261. include/ost/gui/sequence_viewer/tick_painter.hh
  262. include/ost/gui/sequence_viewer/title_row.hh
  263. include/ost/gui/thin_splitter.hh
  264. include/ost/gui/tools/manipulator.hh
  265. include/ost/gui/tools/map_tool.hh
  266. include/ost/gui/tools/measure_tool.hh
  267. include/ost/gui/tools/mouse_event.hh
  268. include/ost/gui/tools/selection_tool.hh
  269. include/ost/gui/tools/tool.hh
  270. include/ost/gui/tools/tool_bar.hh
  271. include/ost/gui/tools/tool_manager.hh
  272. include/ost/gui/tools/tool_option.hh
  273. include/ost/gui/tools/tool_option_group.hh
  274. include/ost/gui/tools/tool_options.hh
  275. include/ost/gui/tools/tool_options_widget.hh
  276. include/ost/gui/tools/tool_options_win.hh
  277. include/ost/gui/widget.hh
  278. include/ost/gui/widget_geom_handler.hh
  279. include/ost/gui/widget_pool.hh
  280. include/ost/gui/widget_registry.hh
  281. include/ost/gui/widget_state_saver.hh
  282. include/ost/img/alg/alg_mirror.hh
  283. include/ost/img/alg/alg_shift.hh
  284. include/ost/img/alg/alg_transform.hh
  285. include/ost/img/alg/anisotropic.hh
  286. include/ost/img/alg/auto_correlate.hh
  287. include/ost/img/alg/clear.hh
  288. include/ost/img/alg/clip_min_max.hh
  289. include/ost/img/alg/conjugate.hh
  290. include/ost/img/alg/convolute.hh
  291. include/ost/img/alg/correlate.hh
  292. include/ost/img/alg/cross_correlate.hh
  293. include/ost/img/alg/density_slice.hh
  294. include/ost/img/alg/dft.hh
  295. include/ost/img/alg/discrete_shrink.hh
  296. include/ost/img/alg/fft.hh
  297. include/ost/img/alg/fftw_helper.hh
  298. include/ost/img/alg/fill.hh
  299. include/ost/img/alg/filter.hh
  300. include/ost/img/alg/fourier_filters.hh
  301. include/ost/img/alg/fractional_shift.hh
  302. include/ost/img/alg/gaussian.hh
  303. include/ost/img/alg/gaussian_gradient_magnitude.hh
  304. include/ost/img/alg/gaussian_laplacian.hh
  305. include/ost/img/alg/highest_peak_search_3d.hh
  306. include/ost/img/alg/histogram.hh
  307. include/ost/img/alg/line_average.hh
  308. include/ost/img/alg/line_iterator.hh
  309. include/ost/img/alg/local_sigma_threshold.hh
  310. include/ost/img/alg/mask_image.hh
  311. include/ost/img/alg/module_config.hh
  312. include/ost/img/alg/negate.hh
  313. include/ost/img/alg/norm.hh
  314. include/ost/img/alg/norm_linear.hh
  315. include/ost/img/alg/norm_log.hh
  316. include/ost/img/alg/norm_od.hh
  317. include/ost/img/alg/normalizer.hh
  318. include/ost/img/alg/normalizer_factory.hh
  319. include/ost/img/alg/polar.hh
  320. include/ost/img/alg/power_spectrum.hh
  321. include/ost/img/alg/randomize.hh
  322. include/ost/img/alg/rscrosscorr.hh
  323. include/ost/img/alg/smooth_mask_image.hh
  324. include/ost/img/alg/stat.hh
  325. include/ost/img/alg/stat_accumulator.hh
  326. include/ost/img/alg/stat_min_max.hh
  327. include/ost/img/alg/threshold.hh
  328. include/ost/img/alg/transcendentals.hh
  329. include/ost/img/alg/transform.hh
  330. include/ost/img/alg/transform_fw.hh
  331. include/ost/img/alg/transformation_base.hh
  332. include/ost/img/alg/transformations.hh
  333. include/ost/img/algorithm.hh
  334. include/ost/img/circle_mask.hh
  335. include/ost/img/composite_mask.hh
  336. include/ost/img/data.hh
  337. include/ost/img/data_algorithm.hh
  338. include/ost/img/data_observer.hh
  339. include/ost/img/data_types.hh
  340. include/ost/img/debug.hh
  341. include/ost/img/dllexport.hh
  342. include/ost/img/extent.hh
  343. include/ost/img/extent_iterator.hh
  344. include/ost/img/extent_mask.hh
  345. include/ost/img/image.hh
  346. include/ost/img/image_factory.hh
  347. include/ost/img/image_fw.hh
  348. include/ost/img/image_handle.hh
  349. include/ost/img/image_handle_fw.hh
  350. include/ost/img/image_impl.hh
  351. include/ost/img/image_list.hh
  352. include/ost/img/image_state.hh
  353. include/ost/img/image_state/binop.hh
  354. include/ost/img/image_state/dispatch.hh
  355. include/ost/img/image_state/image_state.hh
  356. include/ost/img/image_state/image_state_algorithm.hh
  357. include/ost/img/image_state/image_state_base.hh
  358. include/ost/img/image_state/image_state_base_fw.hh
  359. include/ost/img/image_state/image_state_def.hh
  360. include/ost/img/image_state/image_state_factory.hh
  361. include/ost/img/image_state/image_state_frequency_domain.hh
  362. include/ost/img/image_state/image_state_fw.hh
  363. include/ost/img/image_state/image_state_half_frequency_domain.hh
  364. include/ost/img/image_state/image_state_impl.hh
  365. include/ost/img/image_state/image_state_spatial_domain.hh
  366. include/ost/img/image_state/image_state_visitor.hh
  367. include/ost/img/image_state/image_state_visitor_fw.hh
  368. include/ost/img/image_state/index.hh
  369. include/ost/img/image_state/type_fw.hh
  370. include/ost/img/image_state/value_holder.hh
  371. include/ost/img/image_state_fw.hh
  372. include/ost/img/inverted_mask.hh
  373. include/ost/img/map.hh
  374. include/ost/img/mask.hh
  375. include/ost/img/mask_base.hh
  376. include/ost/img/mask_base_fw.hh
  377. include/ost/img/mask_info_convert.hh
  378. include/ost/img/mask_op.hh
  379. include/ost/img/mask_visitor.hh
  380. include/ost/img/module_config.hh
  381. include/ost/img/normalizer_fw.hh
  382. include/ost/img/normalizer_impl.hh
  383. include/ost/img/null_data.hh
  384. include/ost/img/observable.hh
  385. include/ost/img/paste_impl.hh
  386. include/ost/img/peak.hh
  387. include/ost/img/phase.hh
  388. include/ost/img/physical_units.hh
  389. include/ost/img/pixel_sampling.hh
  390. include/ost/img/point.hh
  391. include/ost/img/point_list.hh
  392. include/ost/img/polygon_mask.hh
  393. include/ost/img/progress.hh
  394. include/ost/img/raster_image/raster_image.hh
  395. include/ost/img/size.hh
  396. include/ost/img/spherical_mask.hh
  397. include/ost/img/util.cc
  398. include/ost/img/util.hh
  399. include/ost/img/value_util.hh
  400. include/ost/img/vecmat.hh
  401. include/ost/info/geom_info_conversion.hh
  402. include/ost/info/info.hh
  403. include/ost/info/info_error.hh
  404. include/ost/info/info_fw.hh
  405. include/ost/info/info_group.hh
  406. include/ost/info/info_handle.hh
  407. include/ost/info/info_impl.hh
  408. include/ost/info/info_impl_fw.hh
  409. include/ost/info/info_item.hh
  410. include/ost/info/info_path.hh
  411. include/ost/info/info_set.hh
  412. include/ost/info/info_verbose_visitor.hh
  413. include/ost/info/info_visitor.hh
  414. include/ost/info/item_type.hh
  415. include/ost/info/item_type_cast.hh
  416. include/ost/info/module_config.hh
  417. include/ost/integrity_error.hh
  418. include/ost/invalid_handle.hh
  419. include/ost/io/binary_data_sink.hh
  420. include/ost/io/binary_data_source.hh
  421. include/ost/io/chemdict_parser.hh
  422. include/ost/io/clustal_io_handler.hh
  423. include/ost/io/container_serialization.hh
  424. include/ost/io/convert.hh
  425. include/ost/io/convert_vax_data.h
  426. include/ost/io/converting_streams.hh
  427. include/ost/io/dcd_io.hh
  428. include/ost/io/entity_io_crd_handler.hh
  429. include/ost/io/entity_io_handler.hh
  430. include/ost/io/entity_io_mae_handler.hh
  431. include/ost/io/entity_io_mmcif_handler.hh
  432. include/ost/io/entity_io_pdb_handler.hh
  433. include/ost/io/entity_io_pqr_handler.hh
  434. include/ost/io/entity_io_sdf_handler.hh
  435. include/ost/io/fasta_io_handler.hh
  436. include/ost/io/formatted_line.hh
  437. include/ost/io/hhm_io_handler.hh
  438. include/ost/io/image_format.hh
  439. include/ost/io/image_format_conversion.cc
  440. include/ost/io/img/convert_vax_data.h
  441. include/ost/io/img/image_format.hh
  442. include/ost/io/img/image_format_conversion.cc
  443. include/ost/io/img/jpk_util.hh
  444. include/ost/io/img/load_map.hh
  445. include/ost/io/img/map_io_dat_handler.hh
  446. include/ost/io/img/map_io_df3_handler.hh
  447. include/ost/io/img/map_io_dm3_handler.hh
  448. include/ost/io/img/map_io_dx_handler.hh
  449. include/ost/io/img/map_io_handler.hh
  450. include/ost/io/img/map_io_ipl_handler.hh
  451. include/ost/io/img/map_io_jpk_handler.hh
  452. include/ost/io/img/map_io_mrc_handler.hh
  453. include/ost/io/img/map_io_nanoscope_handler.hh
  454. include/ost/io/img/map_io_png_handler.hh
  455. include/ost/io/img/map_io_situs_handler.hh
  456. include/ost/io/img/map_io_spi_handler.hh
  457. include/ost/io/img/map_io_tiff_handler.hh
  458. include/ost/io/img/tiff_util.hh
  459. include/ost/io/io_exception.hh
  460. include/ost/io/io_manager.hh
  461. include/ost/io/io_profile.hh
  462. include/ost/io/io_utils.hh
  463. include/ost/io/jpk_util.hh
  464. include/ost/io/load.hh
  465. include/ost/io/load_entity.hh
  466. include/ost/io/load_map.hh
  467. include/ost/io/load_surface.hh
  468. include/ost/io/map_io_dat_handler.hh
  469. include/ost/io/map_io_df3_handler.hh
  470. include/ost/io/map_io_dm3_handler.hh
  471. include/ost/io/map_io_dx_handler.hh
  472. include/ost/io/map_io_handler.hh
  473. include/ost/io/map_io_ipl_handler.hh
  474. include/ost/io/map_io_jpk_handler.hh
  475. include/ost/io/map_io_mrc_handler.hh
  476. include/ost/io/map_io_nanoscope_handler.hh
  477. include/ost/io/map_io_png_handler.hh
  478. include/ost/io/map_io_situs_handler.hh
  479. include/ost/io/map_io_spi_handler.hh
  480. include/ost/io/map_io_tiff_handler.hh
  481. include/ost/io/mmcif_info.hh
  482. include/ost/io/mmcif_reader.hh
  483. include/ost/io/module_config.hh
  484. include/ost/io/mol/chemdict_parser.hh
  485. include/ost/io/mol/dcd_io.hh
  486. include/ost/io/mol/entity_io_crd_handler.hh
  487. include/ost/io/mol/entity_io_handler.hh
  488. include/ost/io/mol/entity_io_mae_handler.hh
  489. include/ost/io/mol/entity_io_mmcif_handler.hh
  490. include/ost/io/mol/entity_io_pdb_handler.hh
  491. include/ost/io/mol/entity_io_pqr_handler.hh
  492. include/ost/io/mol/entity_io_sdf_handler.hh
  493. include/ost/io/mol/io_profile.hh
  494. include/ost/io/mol/load_entity.hh
  495. include/ost/io/mol/load_surface.hh
  496. include/ost/io/mol/mmcif_info.hh
  497. include/ost/io/mol/mmcif_reader.hh
  498. include/ost/io/mol/pdb_reader.hh
  499. include/ost/io/mol/pdb_str.hh
  500. include/ost/io/mol/pdb_writer.hh
  501. include/ost/io/mol/save_entity.hh
  502. include/ost/io/mol/sdf_reader.hh
  503. include/ost/io/mol/sdf_writer.hh
  504. include/ost/io/mol/star_parser.hh
  505. include/ost/io/mol/surface_io_handler.hh
  506. include/ost/io/mol/surface_io_msms_handler.hh
  507. include/ost/io/pdb_reader.hh
  508. include/ost/io/pdb_str.hh
  509. include/ost/io/pdb_writer.hh
  510. include/ost/io/pir_io_handler.hh
  511. include/ost/io/profile_io_handler.hh
  512. include/ost/io/promod_io_handler.hh
  513. include/ost/io/pssm_io_handler.hh
  514. include/ost/io/save.hh
  515. include/ost/io/save_entity.hh
  516. include/ost/io/sdf_reader.hh
  517. include/ost/io/sdf_writer.hh
  518. include/ost/io/seq/clustal_io_handler.hh
  519. include/ost/io/seq/fasta_io_handler.hh
  520. include/ost/io/seq/hhm_io_handler.hh
  521. include/ost/io/seq/load.hh
  522. include/ost/io/seq/pir_io_handler.hh
  523. include/ost/io/seq/profile_io_handler.hh
  524. include/ost/io/seq/promod_io_handler.hh
  525. include/ost/io/seq/pssm_io_handler.hh
  526. include/ost/io/seq/save.hh
  527. include/ost/io/seq/sequence_io_handler.hh
  528. include/ost/io/sequence_io_handler.hh
  529. include/ost/io/star_parser.hh
  530. include/ost/io/surface_io_handler.hh
  531. include/ost/io/surface_io_msms_handler.hh
  532. include/ost/io/swap_util.hh
  533. include/ost/io/tiff_util.hh
  534. include/ost/log.hh
  535. include/ost/log_sink.hh
  536. include/ost/message.hh
  537. include/ost/module_config.hh
  538. include/ost/mol/alg/accessibility.hh
  539. include/ost/mol/alg/adjacency_bitmap.hh
  540. include/ost/mol/alg/clash_score.hh
  541. include/ost/mol/alg/consistency_checks.hh
  542. include/ost/mol/alg/construct_cbeta.hh
  543. include/ost/mol/alg/contact_overlap.hh
  544. include/ost/mol/alg/distance_rmsd_test.hh
  545. include/ost/mol/alg/distance_test_common.hh
  546. include/ost/mol/alg/domain_find.hh
  547. include/ost/mol/alg/entity_to_density.hh
  548. include/ost/mol/alg/filter_clashes.hh
  549. include/ost/mol/alg/local_dist_diff_test.hh
  550. include/ost/mol/alg/module_config.hh
  551. include/ost/mol/alg/pdbize.hh
  552. include/ost/mol/alg/sec_struct.hh
  553. include/ost/mol/alg/sec_structure_segments.hh
  554. include/ost/mol/alg/similarity_matrix.hh
  555. include/ost/mol/alg/structure_analysis.hh
  556. include/ost/mol/alg/superpose_frames.hh
  557. include/ost/mol/alg/svd_superpose.hh
  558. include/ost/mol/alg/trajectory_analysis.hh
  559. include/ost/mol/atom_base.hh
  560. include/ost/mol/atom_handle.hh
  561. include/ost/mol/atom_view.hh
  562. include/ost/mol/bond_handle.hh
  563. include/ost/mol/bond_table.hh
  564. include/ost/mol/bounding_box.hh
  565. include/ost/mol/builder.hh
  566. include/ost/mol/chain_base.hh
  567. include/ost/mol/chain_handle.hh
  568. include/ost/mol/chain_type.hh
  569. include/ost/mol/chain_view.hh
  570. include/ost/mol/chem_class.hh
  571. include/ost/mol/chem_type.hh
  572. include/ost/mol/coord_frame.hh
  573. include/ost/mol/coord_group.hh
  574. include/ost/mol/coord_source.hh
  575. include/ost/mol/editor_base.hh
  576. include/ost/mol/editor_type_fw.hh
  577. include/ost/mol/entity_base.hh
  578. include/ost/mol/entity_handle.hh
  579. include/ost/mol/entity_observer.hh
  580. include/ost/mol/entity_observer_fw.hh
  581. include/ost/mol/entity_property_mapper.hh
  582. include/ost/mol/entity_view.hh
  583. include/ost/mol/entity_visitor.hh
  584. include/ost/mol/entity_visitor_fw.hh
  585. include/ost/mol/handle_type_fw.hh
  586. include/ost/mol/ics_editor.hh
  587. include/ost/mol/impl/atom_group.hh
  588. include/ost/mol/impl/atom_impl.hh
  589. include/ost/mol/impl/atom_impl_fw.hh
  590. include/ost/mol/impl/atom_prop.hh
  591. include/ost/mol/impl/chain_impl.hh
  592. include/ost/mol/impl/chain_impl_fw.hh
  593. include/ost/mol/impl/connector_impl.hh
  594. include/ost/mol/impl/connector_impl_fw.hh
  595. include/ost/mol/impl/dihedral.hh
  596. include/ost/mol/impl/entity_impl.hh
  597. include/ost/mol/impl/entity_impl_fw.hh
  598. include/ost/mol/impl/fragment_impl.hh
  599. include/ost/mol/impl/fragment_impl_fw.hh
  600. include/ost/mol/impl/pointer_iterator.hh
  601. include/ost/mol/impl/query_ast.hh
  602. include/ost/mol/impl/query_ast_fw.hh
  603. include/ost/mol/impl/query_impl.hh
  604. include/ost/mol/impl/query_impl_fw.hh
  605. include/ost/mol/impl/residue_impl.hh
  606. include/ost/mol/impl/residue_impl_fw.hh
  607. include/ost/mol/impl/surface_impl.hh
  608. include/ost/mol/impl/surface_impl_fw.hh
  609. include/ost/mol/impl/torsion_impl.hh
  610. include/ost/mol/impl/torsion_impl_fw.hh
  611. include/ost/mol/in_mem_coord_source.hh
  612. include/ost/mol/module_config.hh
  613. include/ost/mol/mol.hh
  614. include/ost/mol/not_connected_error.hh
  615. include/ost/mol/property_id.hh
  616. include/ost/mol/query.hh
  617. include/ost/mol/query_error.hh
  618. include/ost/mol/query_state.hh
  619. include/ost/mol/query_view_wrapper.hh
  620. include/ost/mol/residue_base.hh
  621. include/ost/mol/residue_handle.hh
  622. include/ost/mol/residue_prop.hh
  623. include/ost/mol/residue_view.hh
  624. include/ost/mol/sec_structure.hh
  625. include/ost/mol/spatial_organizer.hh
  626. include/ost/mol/surface.hh
  627. include/ost/mol/surface_builder.hh
  628. include/ost/mol/surface_handle.hh
  629. include/ost/mol/surface_prop.hh
  630. include/ost/mol/torsion_handle.hh
  631. include/ost/mol/transfer_connectivity.hh
  632. include/ost/mol/transform.hh
  633. include/ost/mol/view_op.hh
  634. include/ost/mol/view_type_fw.hh
  635. include/ost/mol/xcs_editor.hh
  636. include/ost/platform.hh
  637. include/ost/pod_vector.hh
  638. include/ost/profile.hh
  639. include/ost/ptr_observer.hh
  640. include/ost/range.hh
  641. include/ost/seq/alg/alignment_opts.hh
  642. include/ost/seq/alg/clip_alignment.hh
  643. include/ost/seq/alg/conservation.hh
  644. include/ost/seq/alg/contact_prediction_score.hh
  645. include/ost/seq/alg/contact_weight_matrix.hh
  646. include/ost/seq/alg/default_contact_weight_matrix.hh
  647. include/ost/seq/alg/default_pair_subst_weight_matrix.hh
  648. include/ost/seq/alg/distance_map.hh
  649. include/ost/seq/alg/entropy.hh
  650. include/ost/seq/alg/global_align.hh
  651. include/ost/seq/alg/ins_del.hh
  652. include/ost/seq/alg/local_align.hh
  653. include/ost/seq/alg/merge_pairwise_alignments.hh
  654. include/ost/seq/alg/module_config.hh
  655. include/ost/seq/alg/pair_subst_weight_matrix.hh
  656. include/ost/seq/alg/semiglobal_align.hh
  657. include/ost/seq/alg/sequence_identity.hh
  658. include/ost/seq/alg/sequence_similarity.hh
  659. include/ost/seq/alg/subst_weight_matrix.hh
  660. include/ost/seq/alg/variance_map.hh
  661. include/ost/seq/aligned_column.hh
  662. include/ost/seq/aligned_column_iterator.hh
  663. include/ost/seq/aligned_region.hh
  664. include/ost/seq/alignment_handle.hh
  665. include/ost/seq/impl/sequence_impl.hh
  666. include/ost/seq/impl/sequence_impl_fw.hh
  667. include/ost/seq/impl/sequence_list_impl.hh
  668. include/ost/seq/impl/sequence_list_impl_fw.hh
  669. include/ost/seq/impl/sequence_list_iterator.hh
  670. include/ost/seq/invalid_sequence.hh
  671. include/ost/seq/module_config.hh
  672. include/ost/seq/profile_handle.hh
  673. include/ost/seq/sequence_handle.hh
  674. include/ost/seq/sequence_list.hh
  675. include/ost/seq/sequence_op.hh
  676. include/ost/seq/views_from_sequences.hh
  677. include/ost/stdint.hh
  678. include/ost/stdint_msc.hh
  679. include/ost/string_ref.hh
  680. include/ost/test_utils/compare_files.hh
  681. include/ost/tri_matrix.hh
  682. include/ost/units.hh
  683. include/ost/version.hh
  684. lib/libost_base.so
  685. lib/libost_base.so.1.7
  686. lib/libost_base.so.1.7.1
  687. lib/libost_conop.so
  688. lib/libost_conop.so.1.7
  689. lib/libost_conop.so.1.7.1
  690. lib/libost_db.so
  691. lib/libost_db.so.1.7
  692. lib/libost_db.so.1.7.1
  693. lib/libost_geom.so
  694. lib/libost_geom.so.1.7
  695. lib/libost_geom.so.1.7.1
  696. lib/libost_gfx.so
  697. lib/libost_gfx.so.1.7
  698. lib/libost_gfx.so.1.7.1
  699. lib/libost_gui.so
  700. lib/libost_gui.so.1.7
  701. lib/libost_gui.so.1.7.1
  702. lib/libost_img.so
  703. lib/libost_img.so.1.7
  704. lib/libost_img.so.1.7.1
  705. lib/libost_img_alg.so
  706. lib/libost_img_alg.so.1.7
  707. lib/libost_img_alg.so.1.7.1
  708. lib/libost_info.so
  709. lib/libost_info.so.1.7
  710. lib/libost_info.so.1.7.1
  711. lib/libost_io.so
  712. lib/libost_io.so.1.7
  713. lib/libost_io.so.1.7.1
  714. lib/libost_mol.so
  715. lib/libost_mol.so.1.7
  716. lib/libost_mol.so.1.7.1
  717. lib/libost_mol_alg.so
  718. lib/libost_mol_alg.so.1.7
  719. lib/libost_mol_alg.so.1.7.1
  720. lib/libost_seq.so
  721. lib/libost_seq.so.1.7
  722. lib/libost_seq.so.1.7.1
  723. lib/libost_seq_alg.so
  724. lib/libost_seq_alg.so.1.7
  725. lib/libost_seq_alg.so.1.7.1
  726. lib/python2.7/site-packages/ost/__init__.py
  727. lib/python2.7/site-packages/ost/_ost_base.so
  728. lib/python2.7/site-packages/ost/bindings/__init__.py
  729. lib/python2.7/site-packages/ost/bindings/__init__.pyc
  730. lib/python2.7/site-packages/ost/bindings/align_3dcomb.py
  731. lib/python2.7/site-packages/ost/bindings/align_3dcomb.pyc
  732. lib/python2.7/site-packages/ost/bindings/blast.py
  733. lib/python2.7/site-packages/ost/bindings/blast.pyc
  734. lib/python2.7/site-packages/ost/bindings/cadscore.py
  735. lib/python2.7/site-packages/ost/bindings/cadscore.pyc
  736. lib/python2.7/site-packages/ost/bindings/clustalw.py
  737. lib/python2.7/site-packages/ost/bindings/clustalw.pyc
  738. lib/python2.7/site-packages/ost/bindings/dssp.py
  739. lib/python2.7/site-packages/ost/bindings/dssp.pyc
  740. lib/python2.7/site-packages/ost/bindings/hbplus.py
  741. lib/python2.7/site-packages/ost/bindings/hbplus.pyc
  742. lib/python2.7/site-packages/ost/bindings/hhblits.py
  743. lib/python2.7/site-packages/ost/bindings/hhblits.pyc
  744. lib/python2.7/site-packages/ost/bindings/ialign.py
  745. lib/python2.7/site-packages/ost/bindings/ialign.pyc
  746. lib/python2.7/site-packages/ost/bindings/kclust.py
  747. lib/python2.7/site-packages/ost/bindings/kclust.pyc
  748. lib/python2.7/site-packages/ost/bindings/lga.py
  749. lib/python2.7/site-packages/ost/bindings/lga.pyc
  750. lib/python2.7/site-packages/ost/bindings/msms.py
  751. lib/python2.7/site-packages/ost/bindings/msms.pyc
  752. lib/python2.7/site-packages/ost/bindings/naccess.py
  753. lib/python2.7/site-packages/ost/bindings/naccess.pyc
  754. lib/python2.7/site-packages/ost/bindings/tmtools.py
  755. lib/python2.7/site-packages/ost/bindings/tmtools.pyc
  756. lib/python2.7/site-packages/ost/bindings/utils.py
  757. lib/python2.7/site-packages/ost/bindings/utils.pyc
  758. lib/python2.7/site-packages/ost/conop/__init__.py
  759. lib/python2.7/site-packages/ost/conop/__init__.pyc
  760. lib/python2.7/site-packages/ost/conop/_ost_conop.so
  761. lib/python2.7/site-packages/ost/conop/cleanup.py
  762. lib/python2.7/site-packages/ost/conop/cleanup.pyc
  763. lib/python2.7/site-packages/ost/db/__init__.py
  764. lib/python2.7/site-packages/ost/db/__init__.pyc
  765. lib/python2.7/site-packages/ost/dng_startup.py
  766. lib/python2.7/site-packages/ost/geom/__init__.py
  767. lib/python2.7/site-packages/ost/geom/__init__.pyc
  768. lib/python2.7/site-packages/ost/geom/_ost_geom.so
  769. lib/python2.7/site-packages/ost/gfx/__init__.py
  770. lib/python2.7/site-packages/ost/gfx/__init__.pyc
  771. lib/python2.7/site-packages/ost/gfx/_ost_gfx.so
  772. lib/python2.7/site-packages/ost/gfx/py_gfx_obj.py
  773. lib/python2.7/site-packages/ost/gfx/py_gfx_obj.pyc
  774. lib/python2.7/site-packages/ost/gui/__init__.py
  775. lib/python2.7/site-packages/ost/gui/__init__.pyc
  776. lib/python2.7/site-packages/ost/gui/_ost_gui.so
  777. lib/python2.7/site-packages/ost/gui/dng/__init__.py
  778. lib/python2.7/site-packages/ost/gui/dng/__init__.pyc
  779. lib/python2.7/site-packages/ost/gui/dng/init.py
  780. lib/python2.7/site-packages/ost/gui/dng/init.pyc
  781. lib/python2.7/site-packages/ost/gui/dng/menu.py
  782. lib/python2.7/site-packages/ost/gui/dng/menu.pyc
  783. lib/python2.7/site-packages/ost/gui/dng/superpositiondialog.py
  784. lib/python2.7/site-packages/ost/gui/dng/superpositiondialog.pyc
  785. lib/python2.7/site-packages/ost/gui/dng/termuse.py
  786. lib/python2.7/site-packages/ost/gui/dng/termuse.pyc
  787. lib/python2.7/site-packages/ost/gui/gosty_startup.py
  788. lib/python2.7/site-packages/ost/gui/gosty_startup.pyc
  789. lib/python2.7/site-packages/ost/gui/helpwidget.py
  790. lib/python2.7/site-packages/ost/gui/helpwidget.pyc
  791. lib/python2.7/site-packages/ost/gui/init_context_menu.py
  792. lib/python2.7/site-packages/ost/gui/init_context_menu.pyc
  793. lib/python2.7/site-packages/ost/gui/init_menubar.py
  794. lib/python2.7/site-packages/ost/gui/init_menubar.pyc
  795. lib/python2.7/site-packages/ost/gui/init_spacenav.py
  796. lib/python2.7/site-packages/ost/gui/init_spacenav.pyc
  797. lib/python2.7/site-packages/ost/gui/init_splash.py
  798. lib/python2.7/site-packages/ost/gui/init_splash.pyc
  799. lib/python2.7/site-packages/ost/gui/scene/__init__.py
  800. lib/python2.7/site-packages/ost/gui/scene/__init__.pyc
  801. lib/python2.7/site-packages/ost/gui/scene/color_options_widget.py
  802. lib/python2.7/site-packages/ost/gui/scene/color_options_widget.pyc
  803. lib/python2.7/site-packages/ost/gui/scene/color_select_widget.py
  804. lib/python2.7/site-packages/ost/gui/scene/color_select_widget.pyc
  805. lib/python2.7/site-packages/ost/gui/scene/combo_options_widget.py
  806. lib/python2.7/site-packages/ost/gui/scene/combo_options_widget.pyc
  807. lib/python2.7/site-packages/ost/gui/scene/cpk_widget.py
  808. lib/python2.7/site-packages/ost/gui/scene/cpk_widget.pyc
  809. lib/python2.7/site-packages/ost/gui/scene/custom_widget.py
  810. lib/python2.7/site-packages/ost/gui/scene/custom_widget.pyc
  811. lib/python2.7/site-packages/ost/gui/scene/gradient_editor_widget.py
  812. lib/python2.7/site-packages/ost/gui/scene/gradient_editor_widget.pyc
  813. lib/python2.7/site-packages/ost/gui/scene/gradient_info_handler.py
  814. lib/python2.7/site-packages/ost/gui/scene/gradient_info_handler.pyc
  815. lib/python2.7/site-packages/ost/gui/scene/gradient_list_model.py
  816. lib/python2.7/site-packages/ost/gui/scene/gradient_list_model.pyc
  817. lib/python2.7/site-packages/ost/gui/scene/gradient_preset_widget.py
  818. lib/python2.7/site-packages/ost/gui/scene/gradient_preset_widget.pyc
  819. lib/python2.7/site-packages/ost/gui/scene/hsc_widget.py
  820. lib/python2.7/site-packages/ost/gui/scene/hsc_widget.pyc
  821. lib/python2.7/site-packages/ost/gui/scene/immutable_gradient_info_handler.py
  822. lib/python2.7/site-packages/ost/gui/scene/immutable_gradient_info_handler.pyc
  823. lib/python2.7/site-packages/ost/gui/scene/immutable_preset_info_handler.py
  824. lib/python2.7/site-packages/ost/gui/scene/immutable_preset_info_handler.pyc
  825. lib/python2.7/site-packages/ost/gui/scene/init_inspector.py
  826. lib/python2.7/site-packages/ost/gui/scene/init_inspector.pyc
  827. lib/python2.7/site-packages/ost/gui/scene/inspector_widget.py
  828. lib/python2.7/site-packages/ost/gui/scene/inspector_widget.pyc
  829. lib/python2.7/site-packages/ost/gui/scene/line_trace_widget.py
  830. lib/python2.7/site-packages/ost/gui/scene/line_trace_widget.pyc
  831. lib/python2.7/site-packages/ost/gui/scene/map_level_widget.py
  832. lib/python2.7/site-packages/ost/gui/scene/map_level_widget.pyc
  833. lib/python2.7/site-packages/ost/gui/scene/preset.py
  834. lib/python2.7/site-packages/ost/gui/scene/preset.pyc
  835. lib/python2.7/site-packages/ost/gui/scene/preset_editor_list_model.py
  836. lib/python2.7/site-packages/ost/gui/scene/preset_editor_list_model.pyc
  837. lib/python2.7/site-packages/ost/gui/scene/preset_editor_widget.py
  838. lib/python2.7/site-packages/ost/gui/scene/preset_editor_widget.pyc
  839. lib/python2.7/site-packages/ost/gui/scene/preset_info_handler.py
  840. lib/python2.7/site-packages/ost/gui/scene/preset_info_handler.pyc
  841. lib/python2.7/site-packages/ost/gui/scene/preset_list_model.py
  842. lib/python2.7/site-packages/ost/gui/scene/preset_list_model.pyc
  843. lib/python2.7/site-packages/ost/gui/scene/preset_widget.py
  844. lib/python2.7/site-packages/ost/gui/scene/preset_widget.pyc
  845. lib/python2.7/site-packages/ost/gui/scene/query_editor.py
  846. lib/python2.7/site-packages/ost/gui/scene/query_editor.pyc
  847. lib/python2.7/site-packages/ost/gui/scene/remote.py
  848. lib/python2.7/site-packages/ost/gui/scene/remote.pyc
  849. lib/python2.7/site-packages/ost/gui/scene/render_mode_widget.py
  850. lib/python2.7/site-packages/ost/gui/scene/render_mode_widget.pyc
  851. lib/python2.7/site-packages/ost/gui/scene/render_op.py
  852. lib/python2.7/site-packages/ost/gui/scene/render_op.pyc
  853. lib/python2.7/site-packages/ost/gui/scene/render_options_widget.py
  854. lib/python2.7/site-packages/ost/gui/scene/render_options_widget.pyc
  855. lib/python2.7/site-packages/ost/gui/scene/scene_observer_impl.py
  856. lib/python2.7/site-packages/ost/gui/scene/scene_observer_impl.pyc
  857. lib/python2.7/site-packages/ost/gui/scene/scene_selection_helper.py
  858. lib/python2.7/site-packages/ost/gui/scene/scene_selection_helper.pyc
  859. lib/python2.7/site-packages/ost/gui/scene/simple_widget.py
  860. lib/python2.7/site-packages/ost/gui/scene/simple_widget.pyc
  861. lib/python2.7/site-packages/ost/gui/scene/sline_widget.py
  862. lib/python2.7/site-packages/ost/gui/scene/sline_widget.pyc
  863. lib/python2.7/site-packages/ost/gui/scene/toolbar_options_widget.py
  864. lib/python2.7/site-packages/ost/gui/scene/toolbar_options_widget.pyc
  865. lib/python2.7/site-packages/ost/gui/scene/trace_widget.py
  866. lib/python2.7/site-packages/ost/gui/scene/trace_widget.pyc
  867. lib/python2.7/site-packages/ost/gui/scene/tube_widget.py
  868. lib/python2.7/site-packages/ost/gui/scene/tube_widget.pyc
  869. lib/python2.7/site-packages/ost/gui/scene/uniform_color_widget.py
  870. lib/python2.7/site-packages/ost/gui/scene/uniform_color_widget.pyc
  871. lib/python2.7/site-packages/ost/gui/scene/visibility_op.py
  872. lib/python2.7/site-packages/ost/gui/scene/visibility_op.pyc
  873. lib/python2.7/site-packages/ost/gui/scene/wireframe_widget.py
  874. lib/python2.7/site-packages/ost/gui/scene/wireframe_widget.pyc
  875. lib/python2.7/site-packages/ost/gui/table.py
  876. lib/python2.7/site-packages/ost/gui/table.pyc
  877. lib/python2.7/site-packages/ost/gui/trajectory_viewer.py
  878. lib/python2.7/site-packages/ost/gui/trajectory_viewer.pyc
  879. lib/python2.7/site-packages/ost/img/__init__.py
  880. lib/python2.7/site-packages/ost/img/__init__.pyc
  881. lib/python2.7/site-packages/ost/img/_ost_img.so
  882. lib/python2.7/site-packages/ost/img/alg/__init__.py
  883. lib/python2.7/site-packages/ost/img/alg/__init__.pyc
  884. lib/python2.7/site-packages/ost/img/alg/_ost_img_alg.so
  885. lib/python2.7/site-packages/ost/info/__init__.py
  886. lib/python2.7/site-packages/ost/info/__init__.pyc
  887. lib/python2.7/site-packages/ost/info/_ost_info.so
  888. lib/python2.7/site-packages/ost/io/__init__.py
  889. lib/python2.7/site-packages/ost/io/__init__.pyc
  890. lib/python2.7/site-packages/ost/io/_ost_io.so
  891. lib/python2.7/site-packages/ost/io/remote.py
  892. lib/python2.7/site-packages/ost/io/remote.pyc
  893. lib/python2.7/site-packages/ost/io/repository.py
  894. lib/python2.7/site-packages/ost/io/repository.pyc
  895. lib/python2.7/site-packages/ost/mol/__init__.py
  896. lib/python2.7/site-packages/ost/mol/__init__.pyc
  897. lib/python2.7/site-packages/ost/mol/_ost_mol.so
  898. lib/python2.7/site-packages/ost/mol/alg/__init__.py
  899. lib/python2.7/site-packages/ost/mol/alg/__init__.pyc
  900. lib/python2.7/site-packages/ost/mol/alg/_ost_mol_alg.so
  901. lib/python2.7/site-packages/ost/mol/alg/hbond.py
  902. lib/python2.7/site-packages/ost/mol/alg/hbond.pyc
  903. lib/python2.7/site-packages/ost/mol/alg/helix_kinks.py
  904. lib/python2.7/site-packages/ost/mol/alg/helix_kinks.pyc
  905. lib/python2.7/site-packages/ost/mol/alg/qsscoring.py
  906. lib/python2.7/site-packages/ost/mol/alg/qsscoring.pyc
  907. lib/python2.7/site-packages/ost/mol/alg/structure_analysis.py
  908. lib/python2.7/site-packages/ost/mol/alg/structure_analysis.pyc
  909. lib/python2.7/site-packages/ost/mol/alg/superpose.py
  910. lib/python2.7/site-packages/ost/mol/alg/superpose.pyc
  911. lib/python2.7/site-packages/ost/mol/alg/trajectory_analysis.py
  912. lib/python2.7/site-packages/ost/mol/alg/trajectory_analysis.pyc
  913. lib/python2.7/site-packages/ost/mol/alg/views.py
  914. lib/python2.7/site-packages/ost/mol/alg/views.pyc
  915. lib/python2.7/site-packages/ost/ost_startup.py
  916. lib/python2.7/site-packages/ost/seq/__init__.py
  917. lib/python2.7/site-packages/ost/seq/__init__.pyc
  918. lib/python2.7/site-packages/ost/seq/_ost_seq.so
  919. lib/python2.7/site-packages/ost/seq/alg/__init__.py
  920. lib/python2.7/site-packages/ost/seq/alg/__init__.pyc
  921. lib/python2.7/site-packages/ost/seq/alg/_ost_seq_alg.so
  922. lib/python2.7/site-packages/ost/seq/alg/mat.py
  923. lib/python2.7/site-packages/ost/seq/alg/mat.pyc
  924. lib/python2.7/site-packages/ost/seq/alg/renumber.py
  925. lib/python2.7/site-packages/ost/seq/alg/renumber.pyc
  926. lib/python2.7/site-packages/ost/settings.py
  927. lib/python2.7/site-packages/ost/settings.pyc
  928. lib/python2.7/site-packages/ost/stutil.py
  929. lib/python2.7/site-packages/ost/stutil.pyc
  930. lib/python2.7/site-packages/ost/table.py
  931. lib/python2.7/site-packages/ost/table.pyc
  932. lib/python2.7/site-packages/ost/table_selector.py
  933. lib/python2.7/site-packages/ost/table_selector.pyc
  934. lib/python2.7/site-packages/ost/testutils.py
  935. lib/python2.7/site-packages/ost/testutils.pyc
  936. lib/python2.7/site-packages/ost/xmlrunner.py
  937. lib/python2.7/site-packages/ost/xmlrunner.pyc
  938. libexec/openstructure/gosty
  939. libexec/openstructure/ost_config
  940. share/openstructure/atom_scattering_properties.txt
  941. share/openstructure/gui/icons/add_icon.png
  942. share/openstructure/gui/icons/close_icon.png
  943. share/openstructure/gui/icons/critical_icon.png
  944. share/openstructure/gui/icons/delete_icon.png
  945. share/openstructure/gui/icons/distance_icon.png
  946. share/openstructure/gui/icons/find_icon.png
  947. share/openstructure/gui/icons/information_icon.png
  948. share/openstructure/gui/icons/map_icon.png
  949. share/openstructure/gui/icons/menubar_icon.png
  950. share/openstructure/gui/icons/refresh.png
  951. share/openstructure/gui/icons/rigid_body_manipulator_icon.png
  952. share/openstructure/gui/icons/selection_icon.png
  953. share/openstructure/gui/icons/show_sidebar_icon.png
  954. share/openstructure/gui/icons/site_icon.png
  955. share/openstructure/gui/icons/split_icon.png
  956. share/openstructure/gui/icons/warning_icon.png
  957. share/openstructure/gui/images/logo-small.png
  958. share/openstructure/scene/gradients.xml
  959. share/openstructure/scene/icons/color_icon.png
  960. share/openstructure/scene/icons/preset_icon.png
  961. share/openstructure/scene/icons/render_icon.png
  962. share/openstructure/scene/icons/tool_icon.png
  963. share/openstructure/scene/presets.xml
  964. share/openstructure/stereo_chemical_props.txt
  965. share/openstructure/textures/glyph_texture.png
  966. share/openstructure/textures/test_texture.png
  967. @postexec /usr/sbin/service ldconfig restart > /dev/null
  968. @postunexec /usr/sbin/service ldconfig restart > /dev/null
Collapse this list.
Dependency lines:
  • openstructure>0:science/openstructure
No installation instructions:
This port has been deleted.
PKGNAME: openstructure
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
openstructure
ABIlatestquarterly
FreeBSD:11:aarch641.7.1_6pkg-fallout
FreeBSD:11:amd64pkg-falloutpkg-fallout
FreeBSD:11:armv6pkg-falloutpkg-fallout
FreeBSD:11:i386pkg-falloutpkg-fallout
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips64pkg-falloutpkg-fallout
FreeBSD:12:aarch641.7.1_6pkg-fallout
FreeBSD:12:amd64pkg-falloutpkg-fallout
FreeBSD:12:armv61.7.1_6pkg-fallout
FreeBSD:12:armv7pkg-falloutpkg-fallout
FreeBSD:12:i386pkg-falloutpkg-fallout
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:aarch64pkg-falloutpkg-fallout
FreeBSD:13:amd64pkg-falloutpkg-fallout
FreeBSD:13:armv6pkg-falloutpkg-fallout
FreeBSD:13:armv7pkg-falloutpkg-fallout
FreeBSD:13:i386pkg-falloutpkg-fallout
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips64pkg-falloutpkg-fallout
FreeBSD:13:powerpc64pkg-falloutpkg-fallout
FreeBSD:13:riscv64pkg-falloutpkg-fallout
FreeBSD:14:aarch64pkg-falloutpkg-fallout
FreeBSD:14:amd64pkg-falloutpkg-fallout
FreeBSD:14:armv6pkg-falloutpkg-fallout
FreeBSD:14:armv7pkg-falloutpkg-fallout
FreeBSD:14:i386pkg-falloutpkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc64pkg-falloutpkg-fallout
FreeBSD:14:riscv64pkg-falloutpkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. fftw3>0 : math/fftw3
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. eigen3.pc : math/eigen3
  5. python2.7 : lang/python27
  6. py27-qt4-core>=4.12.1 : devel/py-qt4-core@py27
  7. py27-qt4-gui>=4.12.1 : x11-toolkits/py-qt4-gui@py27
  8. xorgproto>=0 : x11/xorgproto
  9. xorgproto>=0 : x11/xorgproto
  10. moc : devel/qt4-moc
  11. qmake : devel/qt4-qmake
  12. rcc : devel/qt4-rcc
  13. uic : devel/qt4-uic
Runtime dependencies:
  1. py27-numpy>0 : math/py-numpy@py27
  2. bash : shells/bash
  3. python2.7 : lang/python27
  4. py27-qt4-core>=4.12.1 : devel/py-qt4-core@py27
  5. py27-qt4-gui>=4.12.1 : x11-toolkits/py-qt4-gui@py27
Library dependencies:
  1. libboost_filesystem.so : devel/boost-libs
  2. libfftw3f.so : math/fftw3-float
  3. libpng16.so : graphics/png
  4. libtiff.so : graphics/tiff
  5. libboost_python27.so : devel/boost-python-libs@py27
  6. libGL.so : graphics/mesa-libs
  7. libGLU.so : graphics/libGLU
  8. libQtCore.so : devel/qt4-corelib
  9. libQtGui.so : x11-toolkits/qt4-gui
  10. libQtNetwork.so : net/qt4-network
  11. libQtOpenGL.so : graphics/qt4-opengl
  12. libQtXml.so : textproc/qt4-xml
There are no ports dependent upon this port

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://git.scicore.unibas.ch/schwede/openstructure/repository/1.7.1/archive.tar.gz?dummy=/
Collapse this list.
Port Moves
  • port deleted on 2019-03-16
    REASON: Has expired: Qt4 has been EOL since december 2015

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.7.1_10
16 Mar 2019 21:55:51
Revision:495967Original commit files touched by this commit
tcberner search for other commits by this committer
Qt4 deprecation: Remove Qt4 and its consumes.

2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.7.1_10
16 Feb 2019 19:05:33
Revision:493059Original commit files touched by this commit
yuri search for other commits by this committer
science/openstructure: python:2.7 for now

PR:		234781
Reported by:	antoine
1.7.1_10
26 Dec 2018 09:06:35
Revision:488363Original commit files touched by this commit
tcberner search for other commits by this committer
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
1.7.1_9
25 Dec 2018 20:25:40
Revision:488341Original commit files touched by this commit
tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
1.7.1_9
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.7.1_8
12 Dec 2018 00:15:50
Revision:487266Original commit files touched by this commit
jbeich search for other commits by this committer
devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645
1.7.1_7
02 Dec 2018 15:41:48
Revision:486467Original commit files touched by this commit
rene search for other commits by this committer
Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741
1.7.1_7
22 Nov 2018 20:18:37
Revision:485614Original commit files touched by this commit
tcberner search for other commits by this committer
pyqt: Change install directories for Python flavor support

* PyQt could not be installed for multiple Python versions at
  the same time, as there were conflicting files.

  This patch creates Python-version versioned directories for
  all these, and further installs binaries with a version number.

* Note, there might be some hickups for software that depends on
  on of the .so's provided by PyQt5, which might not be found
  anymore autmotically, and maybe need some LD-flaggery.

* Update PyQt5 to 5.10.1

* Mark www/py-qt5-webengine broken. It is unforuntately no longer
  compatible with the old qt5-webengine-5.9.4 we ship.

PR:		232745
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D8714
1.7.1_6
11 Sep 2018 18:34:28
Revision:479538Original commit files touched by this commit
zeising search for other commits by this committer
Change x11/xorgproto to become a build dep

Change x11/xorgproto to become a build time dependency when added to
USE_XORG.  Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.

PR:		230909
Reviewed by:	eadler
Approved by:	portmgr (antoine)
Obtained
from:	https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run:	antoine
Differential Revision:	https://reviews.freebsd.org/D16906
1.7.1_5
09 Aug 2018 06:58:31
Revision:476723Original commit files touched by this commit
jbeich search for other commits by this committer
devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
1.7.1_4
13 Jul 2018 09:24:52
Revision:474569Original commit files touched by this commit
yuri search for other commits by this committer
science/openstructure: Add USE_CXXSTD=c++98; Use MASTER_SITES instead of
USE_GITLAB

USE_GITLAB doesn't work in this case because it requires GL_COMMIT while only
DISTVERSION
should be sufficient.

USE_CXXSTD=c++98 is used because -DCMAKE_CXX_FLAGS='-std=c++98' os overridden.

Reported by:	tobik
1.7.1_3
13 Jul 2018 05:32:19
Revision:474549Original commit files touched by this commit
yuri search for other commits by this committer
science/openstructure: Fix build by using -std=c++98

The upstream recommended to use -std=c++98 to fix C++ errors on CURRENT.
Also switch to USE_GITLAB.

Reported by:	fallout (build failure)
Reported by:	mat (USE_GITLAB use)
1.7.1_2
10 Jul 2018 06:13:50
Revision:474335Original commit files touched by this commit
yuri search for other commits by this committer
science/openstructure: Fix build on 12 broken due to the obvious misuse of
std::getline

Reported by:	fallout
1.7.1_1
09 Jul 2018 19:48:44
Revision:474299Original commit files touched by this commit
yuri search for other commits by this committer
science/openstructure: Change MASTER_SITES to project's gitlab tarball URL

Also add bas as runtime dependency
1.7.1
09 Jul 2018 04:41:17
Revision:474223Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/openstructure: Molecular modelling and visualization
environment

Number of commits found: 15