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Port details
libssm C++ toolkit for superposition of macromolecules
1.4.0_3 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.4.0_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-07-08 00:40:04
Last Update: 2023-04-23 09:09:58
Commit Hash: 8d3e020
License: GPLv3
WWW:
https://launchpad.net/ssm
Description:
SSM is a macromolecular coordinate superposition library, written by Eugene Krissinel of the EBI. The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (19 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/libssm-1.4.0_3/catalog.mk
  3. /usr/local/share/licenses/libssm-1.4.0_3/LICENSE
  4. /usr/local/share/licenses/libssm-1.4.0_3/GPLv3
  5. bin/superpose
  6. include/ssm/ssm_align.h
  7. include/ssm/ssm_csia.h
  8. include/ssm/ssm_defs.h
  9. include/ssm/ssm_graph.h
  10. include/ssm/ssm_malign.h
  11. include/ssm/ssm_superpose.h
  12. include/ssm/ssm_vxedge.h
  13. lib/libssm.so
  14. lib/libssm.so.2
  15. lib/libssm.so.2.0.0
  16. libdata/pkgconfig/ssm.pc
  17. @owner
  18. @group
  19. @mode
Collapse this list.
Dependency lines:
  • libssm>0:science/libssm
To install the port:
cd /usr/ports/science/libssm/ && make install clean
To add the package, run one of these commands:
  • pkg install science/libssm
  • pkg install libssm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libssm
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1531063629 SHA256 (ssm-1.4.0.tar.gz) = dea88fd6a2716702ba064ca7c5889d98ee994b1d76227634cb3f7228893a8238 SIZE (ssm-1.4.0.tar.gz) = 431780

Packages (timestamps in pop-ups are UTC):
libssm
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-1.4.0_3-1.4.0_31.4.0_3-1.4.0_2-
FreeBSD:13:quarterly-1.4.0_3-1.4.0_31.4.0_3-1.4.0_31.4.0_3
FreeBSD:14:latest-1.4.0_3-1.4.0_31.4.0_3---
FreeBSD:14:quarterly-1.4.0_3-1.4.0_31.4.0_3-1.4.0_31.4.0_3
FreeBSD:15:latest-1.4.0_3n/a1.4.0_3n/a-1.4.0_31.4.0_3
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
Library dependencies:
  1. libccp4c.so : science/libccp4
  2. libmmdb2.so : science/mmdb2
This port is required by:
for Libraries

Deleted ports which required this port:

Expand this list of 1 deleted port
  1. science/coot*
  2. Collapse this list of deleted ports.
* - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...

Configuration Options:
No options to configure
Options name:
science_libssm
USES:
gmake libtool localbase:ldflags
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ccp4.ac.uk/opensource/
Collapse this list.

Number of commits found: 12

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.4.0_3
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.4.0_2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.4.0_2
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.4.0_2
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.4.0_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.4.0_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
1.4.0
13 Jul 2018 04:58:16
Revision:474548Original commit files touched by this commit
yuri search for other commits by this committer
science/libssm: Fix build: put spaces between quotedstrings and defined values
in C

Reported by:	fallout
1.4.0
10 Jul 2018 06:22:12
Revision:474336Original commit files touched by this commit
yuri search for other commits by this committer
science/libssm: Fix build on 12

Add spaces between quoted strings and defined values.

Reported by:	fallout
1.4.0
08 Jul 2018 15:34:16
Revision:474183Original commit files touched by this commit
yuri search for other commits by this committer
science/libssm: Version number correcton 1.4 -> 1.4.0

Reviewed by:	portscout
1.4
08 Jul 2018 00:46:45
Revision:474149Original commit files touched by this commit
yuri search for other commits by this committer
science/libssm: Remove accidentally left parts
1.4
08 Jul 2018 00:39:48
Revision:474148Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/libssm: C++ toolkit for superposition of macromolecules

Number of commits found: 12