science/kst2: fix build with C++17

Drop register keyword to fix build with clang16.

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

astro/cfitsio: Update to 4.2.0

- Convert REINPLACE_CMD to patch file
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt

Mk/Uses: always use colon for build/run suffix

Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.

Document in CHANGES.

PR:			266034
Exp-run by:		antoine
Approved by:		tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D36349

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen

science/kst2: Fix build with newer HDF5 (1.10.8+ or 1.12.1+)

science/kst2: Update to 2022.02.16 snapshot

- Drop upstreamed patches.

science/netcdf: Update to 4.8.1

- Update MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases

astro/cfitsio: Update to 4.0.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6

KDE_INVENT: drop WRKSRC hack

When USE_GITLAB was changed to follow upstream GitLab's change
in the way tag-tarballs were delivered, a hack was added to
KDE_INVENT because **that** GitLab installation lagged behind
(by one minor revision, Ithink). Now KDE's installation has
been upgraded, it had the same tag-tarball layout as other
GitLabs and the hack is no longer needed.

The ports that use KDE_INVENT have their distinfo updated,
but the ports themselves do not change so I'm not bumping
PORTREVISION; it's the same git checkout, just with different
icing on top.

science/kst2: fix build ahead of CMake 3.20

Multiple else() blocks with one if() were treated as if they
were elseif() blocks except for the last one; this is now a
syntax error.

Remove # $FreeBSD$ from Makefiles.

science/kst2:
- Add support for HDF5 v1.12
- while here replace sed with patch

PR:		251894

science/kst2:
- Switch from GitHub to the primary source repo (KDE invent) [1]
  and update to 2021.01.24 snapshot. The project development is stalled,
  therefore no changes in this update except translations.
- Drop stale patches.
- Amend description and WWW.
- Install man page to the default path.

Suggested by:	adridg [1]

Bump PORTREVISION for astro/cfitsio shlib change

Force to rebuild after math/matio update

science/kst2: prepare for Qt5-5.15

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

Update to 3.47

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

science/kst2:
- Update to 2019.03.25 snapshot
- Download tarball from the official KDE repo on Github
- Remove kde from CATEGORIES: kst is pure Qt app
- Add option for HDF5 data files support
- Enable all options by default

- bump PORTREVISION after math/matio update

science/kst2: remove QT4/QT5 options (Qt4 deprecation)

Approved by:	portmgr (implicit)

Update science/netcdf to 4.6.3

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases
		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741

USES=compiler:c++11-lang is necessary to fix build on GCC-based
architectures.

PR:		233615
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)

science/kst2:
- Update to 2018.11.23 snapshot
- Add LICENSE
- Pass additional args to cmake instead of patching CMakeLists.txt

Fix build with Qt 5.11

PR:		230884
Obtained from:	upstream (partly)

Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540

Update math/gsl to 2.5

PR:		229067

Add explicit dependence on Qt components

science/kst2:
- Switch to GITHUB and update to 2018.04.05 snapshot
- Remove stale patch
- Build Qt 5 version by default
- Take maintainership

Update to 4.5.0

- Pet portlint: reorder LICENSE knobs

Changes:	https://github.com/Unidata/netcdf-c/releases

Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408

Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522

Reassign makc's ports back to the pool.

See "Maintainer Reset" in
https://www.freebsd.org/portmgr/policies_contributors.html. makc's last commit
was in March 31st (r412218), and his ports have been timing out since at least
July (r418155).

I also emailed him 2 weeks ago and have received no response so far.

Convert tab after WWW: in pkg-descrs to single space as per PHB

Approved by:	portmgr blanket

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

Convert my ports to new options helpers

- Switch my ports to USE_QT4=linguisttools_build and adjust Qt components
- Use LUPDATE/LRELEASE provided by bsd.qt.mk
- Drop needless stripping

science/kst2:
- NetCDF 4 is not supported yet, set INGORE if NETCDF option is requested.

PR:		194936
Reported by:	nwhitehorn

science/kst2:
- Update to 2.0.8
- Remove now needless patches
- Add option for building with Qt 5

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)

- Update to 3.360
- Build and install static library
- Bump PORTREVISION for astro/cfitsio shlib change

Changes:	http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt

- Update to 4.3.2 (from science/netcdf4)
- Bump PORTREVISION for science/netcdf shlib change and
  dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]

graphics/vips and the rest:
- bump PORTREVISION after math/matio update

math/dynare:
- fix configure check for matio
- while here, remove needless patch for configure.ac, and convert to USES=tar:xz

Approved by:	Fernando Apesteguia (maintainer)

math/scilab:
- mark BROKEN when building with MATIO option (doesn't support new matio)

science/kst2:
- fix dependency type for matio
- add dependence on pkgconfig

- Bump PORTREVISION for astro/cfitsio shlib change
- While I'm here, convert to new LIB_DEPENDS format

PR:		ports/185951
Submitted by:	Florian Degner <f.degner@gmx.de>

Add patches to fix build on 10 and head

- Support staging
- Use new LIB_DEPENDS syntax
- Use options helpers
- Convert to USES
- Minor changes/fixes

- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [st])

Approved by:	portmgr (bdrewery)

- Remove LATEST_LINK from my Qt4/KDE4 ports
- Use new LIB_DEPENDS syntax
- Use options helpers

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

Update math/gsl to 1.16 and adjust some dependent ports

- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)

- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)

Update to 2.0.6
Add optional support for Matlab files via math/matio
Trip Makefile header

Feature safe:	yes

- Convert my ports to new options framework
- use CONFLICTS_INSTALL
- other minor changes

- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4

Review by:      bapt, David Naylor (kde team)

- update png to 1.5.10

Update to 2.0.5

Add patch from upstream to fix build on i386

Reported by:    erwin/pointyhat

Update to 2.0.4

Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports

CMAKE_BUILD_TYPE is set in bsd.cmake.mk now, remove it from Makefiles

- Kst is broken with undefined CMAKE_BUILD_TYPE. Set CMAKE_BUILD_TYPE to
Release, until a proper fix will be committed to bsd.cmake.mk
- Enable MAKE_JOBS_SAFE again

Reported by:    pointyhat

Unset MAKE_JOBS_SAFE to figure out why the port fails on pointyhat

Update to 2.0.3

- Bump PORTREVISION to chase the update of astro/cfitsio

Tarball was rerolled to update version string.
Bump PORTREVISION

Reported by:    QAT, pointyhat

Update to 2.0.2

Update to 2.0.0 - the first release based on Qt4.
It still lacks scripting support and backward compatibility with kst 1.x series.

Forced commit to note repocopy from science/kst to science/kst2