science/code_saturne: upgrade to 7.1.1

Release notes at
<https://github.com/code-saturne/code_saturne/blob/v7.1/NEWS.md#release-711-march-16-2022>

textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)

textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246

devel/py-qt5, devel/py-sip: Update versions

- Update sip to 6.5.1
- Update PyQt5 to 5.15.6
- Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5
- Update PyQtSip to 12.9.1
- Update PyQtBuilder to 1.12.2
- Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino)

PR:		261685
Exp-run by:	antoine

PyQt: Update sip to 6.5.0, reintroduce sip4 and simplify PyQt framework.

SIP:
As mentioned in the update from sip to sip5, this is a transitional version
to remove what is deprecated in sip4.
Sip6 completely removes the deprecated parts.
Unfortunately, some ports — mostly cura things — can not use sip6, so we
reintroduce sip4.

PyQt:
At the same time, we took the opportunity to simplify PyQT and propose only one
package as for devel/pyside2. */py-qt5-* have been merged — excepted chart,
networkauth and webengine — into devel/py-qt5-pyqt.

This allows us to be in adequacy with the packages that the author of these

science/PETSc: Update 3.14.1 -> 3.16.3

Reported by:	portscout

science/code_saturne: upgrade to 7.1.0

Release notes at
<https://github.com/code-saturne/code_saturne/blob/v7.1/NEWS.md#release-710-december-21-2021>

science/code_saturne: upgrade to 7.0.2

Changelog at
<https://github.com/code-saturne/code_saturne/blob/v7.0/NEWS.md>.

science/code_saturne: upgrade to 7.0

Changelog at <https://github.com/code-saturne/code_saturne/blob/v7.0/NEWS.md>.

math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet

Remove # $FreeBSD$ from Makefiles.

PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1

PR:		254218
Exp-run by:	antoine

PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0

* PyQt5: update to 5.15.3

This is a minor feature and bug-fix release. There are corresponding releases of
the other PyQt5-related packages.

 - Added the missing QImage.setAlphaChannel().
 - Support for the QtNetworkAuth library has been moved to a separate
PyQtNetworkAuth package.
 - Wheels no longer bundle the corresponding Qt libraries and instead
automatically install them from an external wheel.

* QScintilla2: update to 2.12.0

This adds support for Qt6 and removes support for Qt4.

 - Change the new distname (again)i due to a conflict
 - Use the new sip-build system

* devel/py-qtbuilder: update to 1.9.0
* devel/py-sip: fix flavor for sip-distinfo

PR:		253865
Exp-run by:	antoine

Set USES=mpi.

Remove PY_SPHINX from ports using Python 3

Approved by:	 portmgr blanket
Differential Revision:	https://reviews.freebsd.org/D28093

Upgrade to 6.1.3 and enable Python bindings for PLE.

Changelog at <https://github.com/code-saturne/code_saturne/blob/v6.1/NEWS.md>.

Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to
12.8.1

PR:		251764
Exp-run by: antoine

Modify cad/scotch to support int64.

Bump PORTREVISION of consumers because this changes the ABI.

Modify cad/scotch to install shared libraries.

Chase these libraries to the consumers ports.

Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5

- Update PyQt to 5.15.0, py-sip to 4.19.24 and qscintilla2 to 2.11.5
- Use pypi for PYQT [1]
- Add devel/py-qt5-sip (Don't use it for now. It will be used in future updates
of PyQt with py-sip >= 5)
- Add missing py-qt5 ports: comms/py-qt5-sensors, devel/py-qt5-location,
devel/py-qt5-remoteobjects, net/py-qt5-networkauth
- Strip libs
- Refactor *_PATH and *_PORT parts

[1] RiverBankComputing doesn't offer links to download latest version of some
ports

PR:		247369
Reviewed by:	tcberner
Differential Revision:	https://reviews.freebsd.org/D25749
Exp-run by:	antoine

Upgrade to v6.1.2 (6.2.0 is still an intermediate release).

science/code_saturne: fix build on GCC architectures

Use C++11 compiler:
cs_paramedmem_remapper.cxx:124: error: ISO C++ forbids initialization of member
'_sphere_cen'

Define __XSI_VISIBLE to make gettimeofday() available.

MFH:		2020Q3 (fix build blanket)

Upgrade to v6.1.1 and add Scotch's support.

Update Sphinx

- Repocopy textproc/py-sphinx to textproc/py-sphinx18

  Update it to 1.8.5 (latest version from 1.8.X).
  This version supports Python 2 and 3.
  Add test target.

- textproc/py-sphinx: Update to 3.0.2

  Python 3 only (3.5+).
  Add test target.

- Mk/Uses/python.mk: Add PY_SPHINX

Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.

Upgrade to 6.1.0 + some post-release fixes.

Release notes at
<https://github.com/code-saturne/code_saturne/blob/v6.1/NEWS.md>.

Update py-sip to 4.19.21 and qscintilla2 to 2.11.4

  - Update py-sip to 4.19.21
  - Update qscintilla2 to 2.11.4
  - Replace MASTER_SITE_RIVERBANK with https versions
  - Replace QSCI2_DISTNAME to match with the new one

PR:		245308
Approved by:	tcberner (mentor)
Exp-run by:	antoine

Remove the test about openmp.

Upgrade CGNS to 4.0.0.

Release notes at <https://github.com/CGNS/CGNS/releases/tag/v4.0.0>.

Upgrade to v6.0.2.

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

Remove the dependency on libomp, but note that at least openmp 8.0.0
final release is needed.

Upgrade to 6.0.1.

Changelog at <https://github.com/code-saturne/code_saturne/blob/v6.0/NEWS.md>.

Unbreak bulk -a with non default version of python3

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

- Add LICENSE_FILE
- Switch to options helpers
- Update WWW

Approved by:	portmgr blanket

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Switch to Python 3.6 and upgrade to v5.3.3.

Note: Code_Saturne does not run with Qt5 in combination with Python 2.7.
See <https://github.com/code-saturne/code_saturne/issues/44>.

devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

- Upgrade science/cgnslib to 3.4.0
  Release notes at <https://github.com/CGNS/CGNS/releases/tag/v3.4.0>.

- Split tests and fortran option

- Bump PORTREVISION of consumers.

Upgrade to 5.3.2.

Release notes at
https://github.com/code-saturne/code_saturne/blob/v5.3/NEWS.md#release-532---january-29-2019

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call

Fix build with DEFAULT_OPTIONS=python=3.x

PR:		234633

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

Clean up plist

Remove build dependency on the python metaport

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Upgrade to v5.3.1.

On i386, OpenMP seems incompatible with libatomic.

bft, ecs, fvm, mei and ncs have been merged to code_saturne.

Upgrade it to v5.3.0.