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Port details
apbs Electrostatic and solvation properties for complex molecules
1.5.102 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.5.102Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-03 06:15:17
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: MIT
WWW:
https://www.poissonboltzmann.org/
Description:
APBS and PDB2PQR: electrostatic and solvation properties for complex molecules. APBS solves the equations of continuum electrostatics for large biomolecular assemblages. This software was designed "from the ground up" using modern design principles to ensure its ability to interface with other computational packages and evolve as methods and applications change over time.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (724 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/apbs-1.5.102/catalog.mk
  3. /usr/local/share/licenses/apbs-1.5.102/LICENSE
  4. /usr/local/share/licenses/apbs-1.5.102/MIT
  5. bin/apbs
  6. include/apbs/apbs.h
  7. include/apbs/generic/apolparm.h
  8. include/apbs/generic/bemparm.h
  9. include/apbs/generic/femparm.h
  10. include/apbs/generic/geoflowparm.h
  11. include/apbs/generic/mgparm.h
  12. include/apbs/generic/nosh.h
  13. include/apbs/generic/pbamparm.h
  14. include/apbs/generic/pbeparm.h
  15. include/apbs/generic/pbsamparm.h
  16. include/apbs/generic/vacc.h
  17. include/apbs/generic/valist.h
  18. include/apbs/generic/vatom.h
  19. include/apbs/generic/vcap.h
  20. include/apbs/generic/vclist.h
  21. include/apbs/generic/vgreen.h
  22. include/apbs/generic/vhal.h
  23. include/apbs/generic/vmatrix.h
  24. include/apbs/generic/vparam.h
  25. include/apbs/generic/vpbe.h
  26. include/apbs/generic/vstring.h
  27. include/apbs/generic/vunit.h
  28. include/apbs/mg/vgrid.h
  29. include/apbs/mg/vmgrid.h
  30. include/apbs/mg/vopot.h
  31. include/apbs/mg/vpmg.h
  32. include/apbs/mg/vpmgp.h
  33. include/apbs/pmgc/buildAd.h
  34. include/apbs/pmgc/buildBd.h
  35. include/apbs/pmgc/buildGd.h
  36. include/apbs/pmgc/buildPd.h
  37. include/apbs/pmgc/cgd.h
  38. include/apbs/pmgc/gsd.h
  39. include/apbs/pmgc/matvecd.h
  40. include/apbs/pmgc/mgcsd.h
  41. include/apbs/pmgc/mgdrvd.h
  42. include/apbs/pmgc/mgfasd.h
  43. include/apbs/pmgc/mgsubd.h
  44. include/apbs/pmgc/mikpckd.h
  45. include/apbs/pmgc/mlinpckd.h
  46. include/apbs/pmgc/mypdec.h
  47. include/apbs/pmgc/newdrvd.h
  48. include/apbs/pmgc/newtond.h
  49. include/apbs/pmgc/powerd.h
  50. include/apbs/pmgc/smoothd.h
  51. include/apbs/routines.h
  52. include/maloc/maloc.h
  53. include/maloc/maloc_base.h
  54. include/maloc/psh.h
  55. include/maloc/vcom.h
  56. include/maloc/vio.h
  57. include/maloc/vmem.h
  58. include/maloc/vmp.h
  59. include/maloc/vmpi.h
  60. include/maloc/vnm.h
  61. include/maloc/vpred.h
  62. include/maloc/vset.h
  63. include/maloc/vsh.h
  64. include/maloc/vsys.h
  65. lib/libapbs_generic.so
  66. lib/libapbs_mg.so
  67. lib/libapbs_pmgc.so
  68. lib/libapbs_routines.so
  69. lib/libmaloc.so
  70. share/apbs/doc/ChangeLog.md
  71. share/apbs/doc/README
  72. share/apbs/doc/ReleaseNotes.md
  73. share/apbs/doc/data-ontology/README.md
  74. share/apbs/doc/data-ontology/catalog-v001.xml
  75. share/apbs/doc/data-ontology/data-ontology.ttl
  76. share/apbs/doc/data-ontology/protege.sh
  77. share/apbs/doc/icons/APBS_1024.png
  78. share/apbs/doc/icons/APBS_128.png
  79. share/apbs/doc/icons/APBS_128_v2.png
  80. share/apbs/doc/icons/APBS_16.png
  81. share/apbs/doc/icons/APBS_256.png
  82. share/apbs/doc/icons/APBS_32.png
  83. share/apbs/doc/icons/APBS_512.png
  84. share/apbs/doc/icons/APBS_64.png
  85. share/apbs/doc/license/LICENSE.txt
  86. share/apbs/doc/license/license.html
  87. share/apbs/doc/release_procedure.txt
  88. share/apbs/examples/FKBP/1d7h-dmso-complex.pqr
  89. share/apbs/examples/FKBP/1d7h-dmso-mol.in
  90. share/apbs/examples/FKBP/1d7h-dmso-smol.in
  91. share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd
  92. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp
  93. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log
  94. share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog
  95. share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd
  96. share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd
  97. share/apbs/examples/FKBP/1d7h-min.pqr
  98. share/apbs/examples/FKBP/1d7i-dss-complex.pqr
  99. share/apbs/examples/FKBP/1d7i-dss-mol.in
  100. share/apbs/examples/FKBP/1d7i-dss-smol.in
  101. share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd
  102. share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp
  103. share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log
  104. share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd
  105. share/apbs/examples/FKBP/1d7i-min.pqr
  106. share/apbs/examples/FKBP/README.md
  107. share/apbs/examples/FKBP/dmso-min.pqr
  108. share/apbs/examples/FKBP/dss-min.pqr
  109. share/apbs/examples/README.md
  110. share/apbs/examples/actin-dimer/README.md
  111. share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat
  112. share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log
  113. share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp
  114. share/apbs/examples/actin-dimer/UHBD/prot3.pdb
  115. share/apbs/examples/actin-dimer/UHBD/prot4.pdb
  116. share/apbs/examples/actin-dimer/UHBD/single.inp
  117. share/apbs/examples/actin-dimer/UHBD/srsrf.dot
  118. share/apbs/examples/actin-dimer/apbs-mol-auto.in
  119. share/apbs/examples/actin-dimer/apbs-mol-parallel.in
  120. share/apbs/examples/actin-dimer/apbs-smol-auto.in
  121. share/apbs/examples/actin-dimer/apbs-smol-parallel.in
  122. share/apbs/examples/actin-dimer/complex.pqr
  123. share/apbs/examples/actin-dimer/mesh.m
  124. share/apbs/examples/actin-dimer/mol1.pqr
  125. share/apbs/examples/actin-dimer/mol2.pqr
  126. share/apbs/examples/alkanes/2-methylbutane.pdb
  127. share/apbs/examples/alkanes/Makefile.in
  128. share/apbs/examples/alkanes/README.md
  129. share/apbs/examples/alkanes/alkanes.in
  130. share/apbs/examples/alkanes/apbs-forces.in
  131. share/apbs/examples/alkanes/butane.pdb
  132. share/apbs/examples/alkanes/cyclohexane.pdb
  133. share/apbs/examples/alkanes/cyclopentane.pdb
  134. share/apbs/examples/alkanes/ethane.pdb
  135. share/apbs/examples/alkanes/force.result
  136. share/apbs/examples/alkanes/hexane.pdb
  137. share/apbs/examples/alkanes/isobutane.pdb
  138. share/apbs/examples/alkanes/methane.pdb
  139. share/apbs/examples/alkanes/mol.pdb
  140. share/apbs/examples/alkanes/neopentane.pdb
  141. share/apbs/examples/alkanes/parm.dat
  142. share/apbs/examples/alkanes/pentane.pdb
  143. share/apbs/examples/alkanes/propane.pdb
  144. share/apbs/examples/bem-binding-energy/1d30.in
  145. share/apbs/examples/bem-binding-energy/1d30_monomer1.in
  146. share/apbs/examples/bem-binding-energy/1d30_monomer2.in
  147. share/apbs/examples/bem-binding-energy/README.md
  148. share/apbs/examples/bem-binding-energy/test_proteins/1d30.pqr
  149. share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr
  150. share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr
  151. share/apbs/examples/bem-pKa/2LZT-ASH66.in
  152. share/apbs/examples/bem-pKa/2LZT-ASP66.in
  153. share/apbs/examples/bem-pKa/2LZT-noASH66.in
  154. share/apbs/examples/bem-pKa/2LZT-noASP66.in
  155. share/apbs/examples/bem-pKa/ASH66.in
  156. share/apbs/examples/bem-pKa/ASP66.in
  157. share/apbs/examples/bem-pKa/README.md
  158. share/apbs/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr
  159. share/apbs/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr
  160. share/apbs/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr
  161. share/apbs/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr
  162. share/apbs/examples/bem-pKa/test_proteins/ASH66.pqr
  163. share/apbs/examples/bem-pKa/test_proteins/ASP66.pqr
  164. share/apbs/examples/bem/1a63_NanoShaper_SES.in
  165. share/apbs/examples/bem/1a63_NanoShaper_Skin.in
  166. share/apbs/examples/bem/1a63_msms.in
  167. share/apbs/examples/bem/451c_order1.in
  168. share/apbs/examples/bem/451c_order5.in
  169. share/apbs/examples/bem/README.md
  170. share/apbs/examples/bem/test_proteins/1a63.pqr
  171. share/apbs/examples/bem/test_proteins/1ajj.pqr
  172. share/apbs/examples/bem/test_proteins/1bbl.pqr
  173. share/apbs/examples/bem/test_proteins/451c.pqr
  174. share/apbs/examples/bem/test_proteins/oneb.pqr
  175. share/apbs/examples/bem/test_proteins/twob.pqr
  176. share/apbs/examples/bem/test_proteins/twob2.pqr
  177. share/apbs/examples/born/README.md
  178. share/apbs/examples/born/apbs-apolar.in
  179. share/apbs/examples/born/apbs-forces.in
  180. share/apbs/examples/born/apbs-mol-auto.in
  181. share/apbs/examples/born/apbs-mol-fem-extmesh.in
  182. share/apbs/examples/born/apbs-mol-fem.in
  183. share/apbs/examples/born/apbs-mol-parallel.in
  184. share/apbs/examples/born/apbs-smol-auto.in
  185. share/apbs/examples/born/apbs-smol-fem.in
  186. share/apbs/examples/born/apbs-smol-parallel.in
  187. share/apbs/examples/born/apolarforces
  188. share/apbs/examples/born/ion.pqr
  189. share/apbs/examples/born/ion.xml
  190. share/apbs/examples/born/mesh.m
  191. share/apbs/examples/born/parm.dat
  192. share/apbs/examples/born/pmf.dat
  193. share/apbs/examples/born/polarforces
  194. share/apbs/examples/geoflow/1a63.in
  195. share/apbs/examples/geoflow/1a63.pqr
  196. share/apbs/examples/geoflow/README.md
  197. share/apbs/examples/geoflow/gly.pdb
  198. share/apbs/examples/geoflow/gly.pqr
  199. share/apbs/examples/geoflow/glycerol.in
  200. share/apbs/examples/geoflow/imidazole.in
  201. share/apbs/examples/geoflow/imidazole_zap.pqr
  202. share/apbs/examples/hca-bind/README.md
  203. share/apbs/examples/hca-bind/UHBD/bindf-nmap.err
  204. share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp
  205. share/apbs/examples/hca-bind/UHBD/bindf-nmap.out
  206. share/apbs/examples/hca-bind/UHBD/bindf.inp
  207. share/apbs/examples/hca-bind/UHBD/bindf.log
  208. share/apbs/examples/hca-bind/UHBD/bindf.out.orig
  209. share/apbs/examples/hca-bind/UHBD/bindf1.qcd
  210. share/apbs/examples/hca-bind/UHBD/bindf2.err
  211. share/apbs/examples/hca-bind/UHBD/bindf2.qcd
  212. share/apbs/examples/hca-bind/UHBD/srsrf.dot
  213. share/apbs/examples/hca-bind/acet.pqr
  214. share/apbs/examples/hca-bind/apbs-mol.in
  215. share/apbs/examples/hca-bind/apbs-smol.in
  216. share/apbs/examples/hca-bind/complex.pqr
  217. share/apbs/examples/hca-bind/hca.pqr
  218. share/apbs/examples/hca-bind/mesh.m
  219. share/apbs/examples/helix/Apbs_dummy-TEMPLATE.in
  220. share/apbs/examples/helix/Apbs_dummy.in
  221. share/apbs/examples/helix/Apbs_solv-TEMPLATE.in
  222. share/apbs/examples/helix/Membrane-helix-0.pqr
  223. share/apbs/examples/helix/Membrane-helix-12.pqr
  224. share/apbs/examples/helix/Membrane-helix-16.pqr
  225. share/apbs/examples/helix/Membrane-helix-4.pqr
  226. share/apbs/examples/helix/Membrane-helix-8.pqr
  227. share/apbs/examples/helix/Run_membrane-helix.sh
  228. share/apbs/examples/helix/draw_membrane2.c
  229. share/apbs/examples/ion-pmf/README.md
  230. share/apbs/examples/ion-pmf/apolarforces
  231. share/apbs/examples/ion-pmf/complex.in
  232. share/apbs/examples/ion-pmf/ion-pmf.in
  233. share/apbs/examples/ion-pmf/ion-pmf.pdb
  234. share/apbs/examples/ion-pmf/parm.dat
  235. share/apbs/examples/ion-pmf/polarforces
  236. share/apbs/examples/ion-pmf/runme.sh
  237. share/apbs/examples/ion-protein/491.pqr
  238. share/apbs/examples/ion-protein/README.md
  239. share/apbs/examples/ion-protein/UHBD/491.pdb
  240. share/apbs/examples/ion-protein/UHBD/small491.e2.log
  241. share/apbs/examples/ion-protein/UHBD/small491.inp
  242. share/apbs/examples/ion-protein/UHBD/small491.log
  243. share/apbs/examples/ion-protein/UHBD/small491.pdb
  244. share/apbs/examples/ion-protein/apbs-mol-pdiel12.in
  245. share/apbs/examples/ion-protein/apbs-mol-pdiel2.in
  246. share/apbs/examples/ion-protein/apbs-smol-pdiel12.in
  247. share/apbs/examples/ion-protein/apbs-smol-pdiel2.in
  248. share/apbs/examples/ion-protein/complex.pqr
  249. share/apbs/examples/ion-protein/small491.pqr
  250. share/apbs/examples/ionize/README.md
  251. share/apbs/examples/ionize/UHBD/elec.dat.exam
  252. share/apbs/examples/ionize/UHBD/elec.inp.exam
  253. share/apbs/examples/ionize/UHBD/elec.out.orig.exam
  254. share/apbs/examples/ionize/UHBD/elec.pdb.exam
  255. share/apbs/examples/ionize/acetate.pqr
  256. share/apbs/examples/ionize/acetate.xml
  257. share/apbs/examples/ionize/acetic-acid.pqr
  258. share/apbs/examples/ionize/acetic-acid.xml
  259. share/apbs/examples/ionize/apbs-mol.in
  260. share/apbs/examples/ionize/apbs-smol.in
  261. share/apbs/examples/ionize/proton.pqr
  262. share/apbs/examples/ionize/proton.xml
  263. share/apbs/examples/membrane/memv.in
  264. share/apbs/examples/membrane/pot.pqr
  265. share/apbs/examples/membrane/readme.md
  266. share/apbs/examples/misc/README.md
  267. share/apbs/examples/misc/achbp.pqr
  268. share/apbs/examples/misc/apbs-PDB.in
  269. share/apbs/examples/misc/apbs.in
  270. share/apbs/examples/misc/fas2.pqr
  271. share/apbs/examples/misc/mache.pqr
  272. share/apbs/examples/misc/param.dat
  273. share/apbs/examples/opal/README.md
  274. share/apbs/examples/opal/actin-complex.pqr
  275. share/apbs/examples/opal/actin-dimer-para.in
  276. share/apbs/examples/opal/actin-dimer.in
  277. share/apbs/examples/opal/actin-mol1.pqr
  278. share/apbs/examples/opal/actin-mol2.pqr
  279. share/apbs/examples/opal/born.xml
  280. share/apbs/examples/pbam/1a63.in
  281. share/apbs/examples/pbam/1a63.pqr
  282. share/apbs/examples/pbam/README.md
  283. share/apbs/examples/pbam/neg_1.xyz
  284. share/apbs/examples/pbam/neg_2.xyz
  285. share/apbs/examples/pbam/neg_3.xyz
  286. share/apbs/examples/pbam/neg_charge.pqr
  287. share/apbs/examples/pbam/pos_1.xyz
  288. share/apbs/examples/pbam/pos_2.xyz
  289. share/apbs/examples/pbam/pos_3.xyz
  290. share/apbs/examples/pbam/pos_charge.pqr
  291. share/apbs/examples/pbam/toy_dynamics.in
  292. share/apbs/examples/pbam/toy_electrostatic.in
  293. share/apbs/examples/pbam/toy_energyforce.in
  294. share/apbs/examples/pbsam-barn_bars/barn_bars_electro.in
  295. share/apbs/examples/pbsam-barn_bars/barnase.pqr
  296. share/apbs/examples/pbsam-barn_bars/barstar.pqr
  297. share/apbs/examples/pbsam-gly/README.md
  298. share/apbs/examples/pbsam-gly/gly.pqr
  299. share/apbs/examples/pbsam-gly/gly.vert
  300. share/apbs/examples/pbsam-gly/gly_cg.pqr
  301. share/apbs/examples/pbsam-gly/gly_cg2.pqr
  302. share/apbs/examples/pbsam-gly/gly_dynamics.in
  303. share/apbs/examples/pbsam-gly/gly_electrostatic.in
  304. share/apbs/examples/pbsam-gly/gly_energyforce.in
  305. share/apbs/examples/pbsam-gly/msms/gly_electrostatic.in
  306. share/apbs/examples/pbsam-gly/msms/gly_msms.pqr
  307. share/apbs/examples/pbsam-gly/traj_1_1.xyz
  308. share/apbs/examples/pbsam-gly/traj_1_2.xyz
  309. share/apbs/examples/pbsam-gly/traj_2_1.xyz
  310. share/apbs/examples/pbsam-gly/traj_2_2.xyz
  311. share/apbs/examples/pka-lig/README.md
  312. share/apbs/examples/pka-lig/UHBD/README
  313. share/apbs/examples/pka-lig/UHBD/uhbd1-apo.out
  314. share/apbs/examples/pka-lig/UHBD/uhbd1-bin.out
  315. share/apbs/examples/pka-lig/UHBD/uhbd1-lig.out
  316. share/apbs/examples/pka-lig/UHBD/uhbd2-apo.out
  317. share/apbs/examples/pka-lig/UHBD/uhbd2-bin.out
  318. share/apbs/examples/pka-lig/UHBD/uhbd2-lig.out
  319. share/apbs/examples/pka-lig/apbs-mol-surf.in
  320. share/apbs/examples/pka-lig/apbs-mol-vdw.in
  321. share/apbs/examples/pka-lig/apbs-smol-surf.in
  322. share/apbs/examples/pka-lig/apbs-smol-vdw.in
  323. share/apbs/examples/pka-lig/bx6_7_apo_apbs.pqr
  324. share/apbs/examples/pka-lig/bx6_7_bin_apbs.pqr
  325. share/apbs/examples/pka-lig/bx6_7_lig_apbs.pqr
  326. share/apbs/examples/point-pmf/README.md
  327. share/apbs/examples/point-pmf/apbs.in
  328. share/apbs/examples/point-pmf/complex-0_1.in
  329. share/apbs/examples/point-pmf/complex-0_1.pqr
  330. share/apbs/examples/point-pmf/complex-0_2.in
  331. share/apbs/examples/point-pmf/complex-0_2.pqr
  332. share/apbs/examples/point-pmf/complex-0_3.in
  333. share/apbs/examples/point-pmf/complex-0_3.pqr
  334. share/apbs/examples/point-pmf/complex-0_4.in
  335. share/apbs/examples/point-pmf/complex-0_4.pqr
  336. share/apbs/examples/point-pmf/energy.dat
  337. share/apbs/examples/point-pmf/mol0.pqr
  338. share/apbs/examples/point-pmf/mol1.pqr
  339. share/apbs/examples/point-pmf/mol2.pqr
  340. share/apbs/examples/point-pmf/mol3.pqr
  341. share/apbs/examples/point-pmf/mol4.pqr
  342. share/apbs/examples/point-pmf/point-pmf-0.in
  343. share/apbs/examples/point-pmf/runme.sh
  344. share/apbs/examples/protein-rna/Makefile.am
  345. share/apbs/examples/protein-rna/Makefile.in
  346. share/apbs/examples/protein-rna/PDB/model_outBoxB19.pdb
  347. share/apbs/examples/protein-rna/PDB/model_outNB.pdb
  348. share/apbs/examples/protein-rna/PDB/model_outNpep.pdb
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  567. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/read_inm.m
  568. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/BoundaryCondition.m
  569. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/BuildA.m
  570. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/comparison.m
  571. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/comparison_reaction_field.m
  572. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/data_parse.m
  573. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/discretization.m
  574. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/dx_export.m
  575. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/main.m
  576. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/read_inm.m
  577. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/BoundaryCondition.m
  578. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/BuildA.m
  579. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/comparison.m
  580. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/comparison_reaction_field.m
  581. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/data_parse.m
  582. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/discretization.m
  583. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/dx_export.m
  584. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/gridinf.m
  585. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/main.m
  586. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/read_inm.m
  587. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/BoundaryCondition.m
  588. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/BuildA.m
  589. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MAPBS.m
  590. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MATLAB_PB_SOLVER_5.pdf
  591. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/MATLAB_PB_SOLVER_5.tex
  592. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/Readme.txt
  593. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/centerofgrid.m
  594. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/comparison.m
  595. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/comparison_reaction_field.m
  596. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/data_parse.m
  597. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/discretization.m
  598. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/dx_export.m
  599. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/fbc.m
  600. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/gridinf.m
  601. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/parameters.m
  602. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/read_inm.m
  603. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/BoundaryCondition.m
  604. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/BuildA.m
  605. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MAPBS.m
  606. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS.fig
  607. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS.m
  608. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS_FOCUS.fig
  609. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_APBS_FOCUS.m
  610. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_6.pdf
  611. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_6.tex
  612. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/MATLAB_PB_SOLVER_AND_GUI.pdf
  613. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/Readme.txt
  614. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/centerofgrid.m
  615. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison.m
  616. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_pot.fig
  617. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_pot.m
  618. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/comparison_reaction_field.m
  619. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/data_parse.m
  620. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/discretization.m
  621. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/dx_export.m
  622. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/energy.m
  623. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/fbc.m
  624. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/gridinf.m
  625. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/inmcreator.fig
  626. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/inmcreator.m
  627. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/mapbs_comparison.m
  628. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/parameters.m
  629. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/read_inm.m
  630. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/BoundaryCondition.m
  631. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/BuildA.m
  632. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MAPBS.m
  633. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.fig
  634. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.m
  635. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.fig
  636. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.m
  637. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_PB_SOLVER_AND_GUI.pdf
  638. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/centerofgrid.m
  639. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.fig
  640. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.m
  641. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/data_parse.m
  642. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/discretization.m
  643. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/dx_export.m
  644. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/energy.m
  645. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/fbc.m
  646. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/gridinf.m
  647. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/mapbs_comparison.m
  648. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/parameters.m
  649. share/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/read_inm.m
  650. share/apbs/tools/matlab/solver/README
  651. share/apbs/tools/matlab/solver/born-ion-model-example.pdf
  652. share/apbs/tools/matlab/solver/born-ion-model-example.tex
  653. share/apbs/tools/matlab/solver/two-ions-model-example.pdf
  654. share/apbs/tools/matlab/solver/two-ions-model-example.tex
  655. share/apbs/tools/mesh/analysis.c
  656. share/apbs/tools/mesh/benchmark.c
  657. share/apbs/tools/mesh/del2dx.c
  658. share/apbs/tools/mesh/dx2mol.c
  659. share/apbs/tools/mesh/dx2uhbd.c
  660. share/apbs/tools/mesh/dxmath.c
  661. share/apbs/tools/mesh/mergedx.c
  662. share/apbs/tools/mesh/mergedx2.c
  663. share/apbs/tools/mesh/mgmesh.c
  664. share/apbs/tools/mesh/multivalue.c
  665. share/apbs/tools/mesh/similarity.c
  666. share/apbs/tools/mesh/smooth.c
  667. share/apbs/tools/mesh/tensor2dx.c
  668. share/apbs/tools/mesh/uhbd_asc2bin.c
  669. share/apbs/tools/mesh/value.c
  670. share/apbs/tools/osx/APBS.iconset/icon_128x128.png
  671. share/apbs/tools/osx/APBS.iconset/icon_128x128@2x.png
  672. share/apbs/tools/osx/APBS.iconset/icon_16x16.png
  673. share/apbs/tools/osx/APBS.iconset/icon_16x16@2x.png
  674. share/apbs/tools/osx/APBS.iconset/icon_256x256.png
  675. share/apbs/tools/osx/APBS.iconset/icon_256x256@2x.png
  676. share/apbs/tools/osx/APBS.iconset/icon_32x32.png
  677. share/apbs/tools/osx/APBS.iconset/icon_32x32@2x.png
  678. share/apbs/tools/osx/APBS.iconset/icon_512x512.png
  679. share/apbs/tools/osx/APBS.iconset/icon_512x512@2x.png
  680. share/apbs/tools/osx/apbs_term
  681. share/apbs/tools/osx/info.plist
  682. share/apbs/tools/osx/patch_binary.sh
  683. share/apbs/tools/python/Makefile
  684. share/apbs/tools/python/Makefile.am
  685. share/apbs/tools/python/Makefile.in
  686. share/apbs/tools/python/README
  687. share/apbs/tools/python/apbs.in
  688. share/apbs/tools/python/apbslib.c
  689. share/apbs/tools/python/apbslib.i
  690. share/apbs/tools/python/apbslib_wrap.doc
  691. share/apbs/tools/python/ion.pqr
  692. share/apbs/tools/python/main.py
  693. share/apbs/tools/python/noinput.py
  694. share/apbs/tools/python/vgrid/Makefile
  695. share/apbs/tools/python/vgrid/Makefile.am
  696. share/apbs/tools/python/vgrid/Makefile.in
  697. share/apbs/tools/python/vgrid/README
  698. share/apbs/tools/python/vgrid/average.py
  699. share/apbs/tools/python/vgrid/mergedx.py
  700. share/apbs/tools/python/vgrid/read.py
  701. share/apbs/tools/python/vgrid/vgrid.i
  702. share/apbs/tools/python/vgrid/vgrid.py
  703. share/apbs/tools/python/vgrid/vgridlib.c
  704. share/apbs/tools/visualization/opendx/multipot.cfg
  705. share/apbs/tools/visualization/opendx/multipot.net
  706. share/apbs/tools/visualization/opendx/pot.cfg
  707. share/apbs/tools/visualization/opendx/pot.cm
  708. share/apbs/tools/visualization/opendx/pot.net
  709. share/apbs/tools/visualization/opendx/potacc.cfg
  710. share/apbs/tools/visualization/opendx/potacc.cm
  711. share/apbs/tools/visualization/opendx/potacc.net
  712. share/apbs/tools/visualization/opendx/surface.cfg
  713. share/apbs/tools/visualization/opendx/surface.net
  714. share/apbs/tools/windows/NSI configuration/apbs.nsi
  715. share/apbs/tools/windows/README.txt
  716. share/apbs/tools/windows/command-line support/apbs-cli.bat
  717. share/apbs/tools/windows/configuration headers/apbscfg.h
  718. share/apbs/tools/windows/configuration headers/maloccf.h
  719. share/apbs/tools/windows/visual studio property pages/Debug build properties.props
  720. share/apbs/tools/windows/visual studio property pages/Generic build properties.props
  721. share/apbs/tools/windows/visual studio property pages/Release build properties.props
  722. @owner
  723. @group
  724. @mode
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Dependency lines:
  • apbs>0:science/apbs
To install the port:
cd /usr/ports/science/apbs/ && make install clean
To add the package, run one of these commands:
  • pkg install science/apbs
  • pkg install apbs
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: apbs
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1556863311 SHA256 (Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz) = 873dae1df4d271b2e433283544e9cadb81d0b06347c6ef387370dd570640fc6a SIZE (Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz) = 113071316

Expand this list (10 items)

Collapse this list.

SHA256 (Electrostatics-FETK-0c6fdea_GH0.tar.gz) = df98ae46b2e34e3817a6ba72fabf62db416620407d258110d85ec9ee089e0e94 SIZE (Electrostatics-FETK-0c6fdea_GH0.tar.gz) = 32979631 SHA256 (Electrostatics-geoflow_c-e8ce510_GH0.tar.gz) = 27e38916e141771b71a43cebf0739911905531100df59a9fb913626a35753c2f SIZE (Electrostatics-geoflow_c-e8ce510_GH0.tar.gz) = 45609 SHA256 (lwwilson1-TABIPB-7e3a407_GH0.tar.gz) = 7b2a8f02e06ec0f91d8cf30e15ac757d12bb776cf5a963fc41572398a6cb6c44 SIZE (lwwilson1-TABIPB-7e3a407_GH0.tar.gz) = 75583 SHA256 (lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz) = 5e58ea8c419c229efb5a7d9a1bb88ba96e62790f27f97d835262417d6b098a17 SIZE (lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz) = 3869445 SHA256 (davas301-pb_solvers-4858465_GH0.tar.gz) = c0a75fa213e369ad467ab910fb7536f963f777ff962210239ebfff3e4bde30b0 SIZE (davas301-pb_solvers-4858465_GH0.tar.gz) = 11187305

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Packages (timestamps in pop-ups are UTC):
apbs
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.5.1021.5.1021.5.1021.5.1021.5.102-1.5.102-
FreeBSD:13:quarterly1.5.1021.5.1021.5.1021.5.1021.5.1021.5.1021.5.1021.5.102
FreeBSD:14:latest1.5.1021.5.1021.5.1021.5.1021.5.1021.5.102-1.5.102
FreeBSD:14:quarterly1.5.1021.5.102-1.5.1021.5.1021.5.1021.5.1021.5.102
FreeBSD:15:latest1.5.1021.5.102n/a1.5.102n/a1.5.1021.5.1021.5.102
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_apbs
USES:
cmake shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/Electrostatics/apbs-pdb2pqr/tar.gz/apbs-1.5-102-g500c1473?dummy=/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.5.102
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.5.102
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.5.102
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.5.102
27 Aug 2020 18:38:00
Revision:546396Original commit files touched by this commit
tcberner search for other commits by this committer
science/apbs: fix build on current

- upstream seems to have some fixes for gcc10, which could likely be backported
(but failed to apply)
1.5.102
03 May 2019 06:15:44
Revision:500699Original commit files touched by this commit
yuri search for other commits by this committer
science/apbs: Fix license
1.5.102
03 May 2019 06:14:57
Revision:500698Original commit files touched by this commit
yuri search for other commits by this committer
New port: science/apbs: Electrostatic and solvation properties for complex
molecules

Number of commits found: 7