non port: science/afni/Makefile |
Number of commits found: 267 (showing only 100 on this page) |
Friday, 4 Mar 2022
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12:16 Fernando Apesteguía (fernape)
science/afni: update to 22.0.15
3847ba6 |
Tuesday, 22 Feb 2022
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07:19 Fernando Apesteguía (fernape)
science/afni: update to 22.0.11
405f09e |
Friday, 18 Feb 2022
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21:15 Stephen Montgomery-Smith (stephen)
math/qhull: Renaming ports
qhull renamed to qhull7.
qhull8 renamed to qhull.
qhull7 marked deprecated.
Dependencies updated.
5693794 |
19:21 Thierry Thomas (thierry)
science/afni: switch to qhull from math/qhull8
Chase my previous commits: afni uses the binary qhull as a runtime dependency.
495428f |
Thursday, 17 Feb 2022
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07:58 Fernando Apesteguía (fernape)
science/afni: update to 22.0.10
d81269b |
Saturday, 12 Feb 2022
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19:20 Fernando Apesteguía (fernape)
science/afni: update to 22.0.09
6807eec |
Friday, 11 Feb 2022
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07:07 Fernando Apesteguía (fernape)
science/afni: udpate to 22.0.07
b08d3ad |
Thursday, 10 Feb 2022
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12:24 Fernando Apesteguía (fernape)
science/afni: update to 22.0.06
a791f77 |
Tuesday, 25 Jan 2022
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09:26 Fernando Apesteguía (fernape)
science/afni: update to 22.0.03
b1ed469 |
Thursday, 13 Jan 2022
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09:20 Fernando Apesteguía (fernape)
science/afni: update to 22.0.00
549b682 |
Wednesday, 12 Jan 2022
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19:41 Tobias C. Berner (tcberner)
math/gsl: bump portrevision of consumers after update to 2.7.1
PR: 260201
654acd8 |
Thursday, 6 Jan 2022
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20:34 Fernando Apesteguía (fernape)
science/afni: update to 21.3.17
569acd7 |
Wednesday, 29 Dec 2021
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21:31 Fernando Apesteguía (fernape)
science/afni: update to 21.3.16
1391cf0 |
Wednesday, 22 Dec 2021
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10:54 Fernando Apesteguía (fernape)
science/afni: update to 21.3.13
29471de |
Monday, 20 Dec 2021
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13:10 Fernando Apesteguía (fernape)
science/afni: update to 21.3.12
88963ff |
Thursday, 9 Dec 2021
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09:06 Fernando Apesteguía (fernape)
science/afni: update to 21.3.10
ae73298 |
Monday, 29 Nov 2021
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21:32 Fernando Apesteguía (fernape)
science/afni: update to 21.3.09
2804094 |
Tuesday, 23 Nov 2021
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15:07 Fernando Apesteguía (fernape)
science/afni: update to 21.3.07
While here, add missing dependencies.
d2b8750 |
Wednesday, 10 Nov 2021
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07:02 Fernando Apesteguía (fernape)
science/afni: update to 21.3.05
Reported by: portscout
1c13a3f |
Friday, 29 Oct 2021
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09:50 Stefan Eßer (se)
*/*: Remove redundant '-[0-9]*' from CONFLICTS
The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").
Many CONFLICTS definitions used patterns like "bash-[0-9]*" to filter
for the bash package in any version. But that pattern is functionally
identical with just "bash".
Approved by: portmgr (blanket)
819f25b |
Friday, 22 Oct 2021
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11:42 Piotr Kubaj (pkubaj)
science/afni: fix build on non-x86
fpsetprec() is only on amd64 and i386 and requires x87 FPU. It's possible to
build without x87, just how it's done on Linux.
cb177d8 |
Monday, 11 Oct 2021
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16:20 Fernando Apesteguía (fernape)
science/afni: update to 21.3.00
e2f9834 |
Wednesday, 6 Oct 2021
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07:19 Fernando Apesteguía (fernape)
science/afni: update to 21.2.10
4e6062a |
Friday, 1 Oct 2021
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05:41 Fernando Apesteguía (fernape)
science/afni: update to 21.2.09
292ec73 |
Sunday, 12 Sep 2021
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13:58 Fernando Apesteguía (fernape)
science/afni: update to 21.2.06
* Remove openmp support. We don't seem to need it.
* Adjust patch
* Add -fcommon to make it build in 13 and 14-current
* Add patch to include -DPIC -fPIC in i386. Otherwise we get:
ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in
readonly segment
71ac810 |
Tuesday, 20 Jul 2021
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17:35 Fernando Apesteguía (fernape)
science/afni: update to 21.2.01
2bee1ca |
Wednesday, 14 Jul 2021
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04:22 Neel Chauhan (nc)
science/afni: Update to 21.2.00
120163f |
Tuesday, 29 Jun 2021
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20:45 Fernando Apesteguía (fernape)
science/afni: update to 21.1.20
d6fa85d |
13:44 Fernando Apesteguía (fernape)
science/afni: update to 21.1.19
c4a4d86 |
Thursday, 24 Jun 2021
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18:02 Fernando Apesteguía (fernape)
science/afni: update to 21.1.16
1f1f18a |
Wednesday, 23 Jun 2021
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06:55 Fernando Apesteguía (fernape)
science/afni: update to 21.1.13
62516db |
Tuesday, 22 Jun 2021
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18:53 Kevin Bowling (kbowling)
graphics/mesa-libs: Bump reverse deps for libglvnd
Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.
PR: 246767
Reviewed by: manu, bapt
Approved by: x11
Differential Revision: https://reviews.freebsd.org/D30824
da3162c |
Wednesday, 16 Jun 2021
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19:31 Tobias C. Berner (tcberner)
math/gsl: update to 2.7
From [1]
* What is new in gsl-2.7:
* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
* fixed bug #60335 (spmatrix test failure, J. Lamb)
* fixed bug #36577
* clarified documentation on interpolation accelerators (V. Krishnan)
* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
* fixed doc bug #59758
* fixed bug #58202 (rstat median for n=5)
* added support for native C complex number types in gsl_complex
when using a C11 compiler
* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
* updated exponential fitting example for nonlinear least squares
* added banded LU decomposition and solver (gsl_linalg_LU_band)
* New functions added to the library:
- gsl_matrix_norm1
- gsl_spmatrix_norm1
- gsl_matrix_complex_conjtrans_memcpy
- gsl_linalg_QL: decomp, unpack
- gsl_linalg_complex_QR_* (thanks to Christian Krueger)
- gsl_vector_sum
- gsl_matrix_scale_rows
- gsl_matrix_scale_columns
- gsl_multilarge_linear_matrix_ptr
- gsl_multilarge_linear_rhs_ptr
- gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense)
- gsl_spmatrix_dense_sub
- gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
- gsl_linalg_QR_UD: decomp, lssolve
- gsl_linalg_QR_UU: decomp, lssolve, QTvec
- gsl_linalg_QR_UZ: decomp
- gsl_multifit_linear_lcurvature
- gsl_spline2d_eval_extrap
* bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me)
* made gsl_sf_legendre_array_index() inline and documented
- gsl_sf_legendre_nlm()
[1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS
PR: 256423
Exp-run by: antoine
63e653a |
07:48 Fernando Apesteguía (fernape)
science/afni: update to 21.1.12
de8f362 |
Monday, 31 May 2021
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20:54 Fernando Apesteguía (fernape)
science/afni: update to 21.1.09
b15c239 |
Thursday, 27 May 2021
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05:36 Fernando Apesteguía (fernape)
science/afni: update to 21.1.08
5b1a889 |
Thursday, 13 May 2021
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12:19 Fernando Apesteguía (fernape)
science/afni: update to 21.1.07
e86a789 |
Sunday, 9 May 2021
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15:54 Fernando Apesteguía (fernape)
science/afni: update to 21.1.06
90697f1 |
Friday, 7 May 2021
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07:37 Fernando Apesteguía (fernape)
science/afni: update to 21.1.04
eea49ad |
Friday, 30 Apr 2021
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07:03 Fernando Apesteguía (fernape)
science/afni: update to 21.1.03
bc5a5fb |
Sunday, 18 Apr 2021
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18:21 Fernando Apesteguía (fernape)
science/afni: update to 21.1.02
68a233c |
Sunday, 11 Apr 2021
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15:37 Fernando Apesteguía (fernape)
science/afni: update to 21.1.01
7020778 |
Wednesday, 7 Apr 2021
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08:09 Mathieu Arnold (mat)
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
cf118cc |
07:02 Fernando Apesteguía (fernape)
science/afni: update to 21.1.00
f2e32f0 |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Sunday, 28 Mar 2021
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07:56 fernape
science/afni: update to 21.0.21
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Thursday, 18 Mar 2021
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16:36 fernape
science/afni: update to 21.0.20
While here, adopt port.
Reported by: portscout
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Wednesday, 17 Mar 2021
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16:37 fernape
science/afni: update to 21.0.19
Reported by: portscout
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Tuesday, 16 Mar 2021
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19:13 nc
science/afni: Update to 21.0.18
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Monday, 15 Mar 2021
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07:54 fernape
science/afni: update to 21.0.17
Reported by: portscout
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Friday, 12 Mar 2021
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07:56 fernape
science/afni: update to 21.0.16
Reported by: portscout
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Thursday, 11 Mar 2021
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08:21 fernape
science/afni: update to 21.0.15
Reported by: portscout
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Tuesday, 9 Mar 2021
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08:50 fernape
science/afni: update to 21.0.14
Reported by: portscout
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Friday, 5 Mar 2021
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06:09 nc
science/afni: Update to 21.0.13
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Monday, 1 Mar 2021
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09:36 fernape
science/afni: update to 21.0.12
Reported by: portscout
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Wednesday, 24 Feb 2021
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12:26 fernape
science/afni: update to 21.0.10
Reported by: portscout
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Tuesday, 23 Feb 2021
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23:18 nc
science/afni: Update to 21.0.09
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Friday, 12 Feb 2021
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22:36 fernape
science/afni: update to 21.0.08
Reported by: portscout
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Tuesday, 9 Feb 2021
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22:12 nc
science/afni: Update to 21.0.07
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Thursday, 28 Jan 2021
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12:53 fernape
science/afni: update to 21.0.6
Reported by: portscout
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Wednesday, 20 Jan 2021
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09:27 fernape
science/afni: update to 21.0.04
Reported by: portscout
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Sunday, 17 Jan 2021
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08:37 fernape
science/afni: update to 21.0.03
Reported by: portscout
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Wednesday, 13 Jan 2021
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14:23 fernape
science/afni: update to 21.0.02
Reported by: portscout
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Sunday, 10 Jan 2021
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08:34 fernape
science/afni: update to 21.0.00
Reported by: portscout
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Monday, 4 Jan 2021
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15:33 rene
science/afni: use math/qhull instead of expired math/qhull5
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Sunday, 27 Dec 2020
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13:06 fernape
science/afni: update to 20.3.04
Reported by: portscout
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Thursday, 10 Dec 2020
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14:21 fernape
science/afni: update to 20.3.03
Reported by: portscout
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Sunday, 15 Nov 2020
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17:24 fernape
science/afni: update to 20.3.02
Reported by: portscout
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Sunday, 4 Oct 2020
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12:07 fernape
science/afni: update to 20.3.00
Reported by: portscout
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Wednesday, 30 Sep 2020
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11:11 fernape
science/afni: update to 20.2.19
Reported by: portscout
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Tuesday, 22 Sep 2020
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17:43 fernape
science/afni: update to 20.2.18
Reported by: portscout
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Thursday, 3 Sep 2020
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07:16 fernape
science/afni: update to 20.2.16
Many utilities are not provided anymore. Most of them are marked in
src/Makefile.INCLUDE under the comment "not distributed 25 Aug 2020"
Others are not marked like that, but they are not shipped anyway, like
3dAnatNudge which has a comment that explains why:
"This program (3dAnatNudge) is old, obsolete, and not maintained!"
Reported by: portscout
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Saturday, 22 Aug 2020
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17:32 fernape
science/afni: update to 20.2.14
Reported by: portscout
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Thursday, 20 Aug 2020
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15:57 fernape
science/afni: update to 20.2.13
Reported by: portscout
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Wednesday, 19 Aug 2020
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10:46 fernape
science/afni: update to 20.2.12
Reported by: portscout
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Thursday, 13 Aug 2020
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05:44 fernape
science/afni: update to 20.2.11
Reported by: portscout
|
Monday, 3 Aug 2020
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17:02 fernape
science/afni: update to 20.2.08
Reported by: portscout
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Wednesday, 29 Jul 2020
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16:10 fernape
science/afni: update to 20.2.06
Reported by: portscout
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Wednesday, 22 Jul 2020
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06:19 fernape
science/afni: update to 20.2.05
Reported by: portscout
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Wednesday, 8 Jul 2020
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10:40 fernape
science/afni: update to 20.2.00
Reported by: portscout
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Thursday, 2 Jul 2020
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06:55 fernape
science/afni: update to 20.1.18
While here:
* Reorder some variables
* Remove duplicate USE_GL
Reported by: portscout
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Sunday, 21 Jun 2020
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14:43 pi
science/afni: update 20.1.16 -> 20.1.17
Reported by: portscout
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Friday, 19 Jun 2020
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06:55 fernape
science/afni: update to 20.1.16
Reported by: portscout
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Tuesday, 16 Jun 2020
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06:31 fernape
science/afni: update to 20.1.15
Reported by: portscout
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Friday, 12 Jun 2020
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09:25 fernape
science/afni: Update to 20.1.14
Reported by: portscout
|
Thursday, 4 Jun 2020
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16:49 fernape
science/afni: update to 20.1.13
Reported by: portscout
|
Wednesday, 3 Jun 2020
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14:44 fernape
science/afni: update to 20.1.12
Reported by: portscout
|
Friday, 29 May 2020
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15:20 fernape
science/afni: update to 20.1.11
Reported by: portscout
|
Wednesday, 27 May 2020
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16:11 fernape
science/afni: update to 20.1.10
Reported by: portscout
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Tuesday, 26 May 2020
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05:45 fernape
science/afni: update to 20.1.07
Reported by: portscout
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Monday, 18 May 2020
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01:29 linimon
Mark as BROKEN on powerpc64:
./predicates_init.c:46: error: implicit declaration of function 'fpsetprec'
While here, remove OBE sparc64 stanza.
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Wednesday, 6 May 2020
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08:22 fernape
science/afni: update to 20.1.06
Reported by: portscout
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Tuesday, 5 May 2020
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16:07 jrm
math/R: Update to version 4.0.0
Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html
Also bump PORTREVISION of ports that depend on math/R.
Submitted by: wen (in part)
Reviewed by: jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision: https://reviews.freebsd.org/D24572
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Thursday, 30 Apr 2020
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15:03 fernape
science/afni: update to 20.1.05
Reported by: portscout
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Wednesday, 29 Apr 2020
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06:55 fernape
science/afni: update to 20.1.03
Reported by: portscout
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Thursday, 23 Apr 2020
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06:34 fernape
science/afni: update to 20.1.02
Reported by: portscout
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Monday, 20 Apr 2020
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12:21 jwb
science/afni: Upgrade to 20.1.02
Added some common R-cran run dependencies
Removed obsolete reinplace patches
Improved do-install to better fit filesystem hierarchy
Releasing maintainership as I no longer work with any AFNI users
Reported by: portscout
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Friday, 25 Oct 2019
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23:41 tcberner
math/gsl: update to 2.6
- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
- this also breaks the two consumers of this port
- biology/gemma: has a conflict with cblas, and is makred broken.
PR: 241363
Exp-run by: antoine
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Saturday, 28 Sep 2019
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10:56 zeising
science/afni: Remove dependency on libXp
Remove dependency on libXp from science/afni, it is not needed, and libXp is
being deprecated.
Remove deprecation from science/afni
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Friday, 27 Sep 2019
|
16:18 zeising
Deprecate x11/libXp, it is deprecated upstream
Deprecate x11/libXp, since it is about to be deprecated upstream. Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff
Sprinkle USES=xorg as needed.
Discussed with: bapt
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Number of commits found: 267 (showing only 100 on this page) |