03:48 Yuri Victorovich (yuri) 

science/abinit: update 9.10.5 → 10.0.3

Reported by:	portscout

    dba461c

09:38 Yuri Victorovich (yuri) 

science/abinit: update 9.10.3 → 9.10.5

Reported by:	portscout

    0e6ed17

09:29 Thierry Thomas (thierry) 

*/*: bump PORTREVISION after OpenMPI upgrade

    9eba616

11:49 Thierry Thomas (thierry) 

*/*: chase the upgrade of BLAS / LAPACK to 3.12.0

PR:		275860

    f2489ab

10:23 Thierry Thomas (thierry) 

*/*: bump PORTREVISION after the upgrade of MPICH to 4.1.2

    843da99

18:36 Thierry Thomas (thierry) 

science/abinit: temporary switch to OpenMPI

Waiting for the error with MPICH-4 to be fixed.

Cf. <https://github.com/abinit/abinit/issues/61>.

PR:		275485
Approved by:	yuri (maintainer)

    4994c45

06:20 Yuri Victorovich (yuri) 

science/abinit: Update 9.10.1 → 9.10.3

Reported by:	portscout

    dd05d3e

19:34 Rene Ladan (rene) 

all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>

    3d9a815

15:01 Yuri Victorovich (yuri) 

science/abinit: Update 9.8.4 → 9.10.1

Reported by:	portscout

    92894f6

00:41 Yuri Victorovich (yuri) 

science/abinit: Update 9.6.2 → 9.8.4

Reported by:	portscout

    d4ca0a7

09:09 Gerald Pfeifer (gerald) 

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

    8d3e020

14:47 Thierry Thomas (thierry) 

science/*: bump PORTREVISION in consumers of libXC

    cceff44

17:58 Thierry Thomas (thierry) 

science/abinit: fix with libXC 6.0.0

See <https://github.com/abinit/abinit/issues/55#issuecomment-1288757862>.

Note: this is fixed in soon-to-come ABINITv9.8. This patch is just in case
libXC is committed before.

PR:		267357
Approved by:	yuri (maintainer)

    33f3c23

21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

19:57 Yuri Victorovich (yuri) 

science/abinit: Update 9.4.2 -> 9.6.2

    e8efaf3

14:35 Tobias C. Berner (tcberner) 

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

    5564b3b

14:22 Tobias C. Berner (tcberner) 

science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Frederic Culot <frederic@culot.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Glenn Johnson
  *  Greg Lewis <glewis@FreeBSD.org>
  *  Igor Serikov <iserikov@acm.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  Ju Pengfei <jupengfei@gmail.com>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Klaus Aehlig <aehlig@linta.de>
  *  Kurt Kanzenbach <kurt@kmk-computers.de>
  *  Leland Wang <llwang@infor.org>
  *  Li-Lun Wang <llwang@infor.org>
  *  Markus Brueffer <markus@FreeBSD.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Pav Lucistnik <pav@FreeBSD.org>
  *  Pav Lucistnik <pav@oook.cz>
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@tutopia.com>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rong-En Fan <rafan@FreeBSD.org>
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Shin-ya Murakami <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Steve Wills <steve@mouf.net
  *  Steve Wills <steve@mouf.net>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  TAOKA Fumiyoshi
  *  Thierry Thomas <thierry@pompo.net>
  *  Tim Cas <ports@stdrand.com>
  *  Uffe Jakobsen <uffe@uffe.org>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Wen heping <wenheping@gmail.com>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman <batman@udel.edu>
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr

    4619604

12:51 Po-Chuan Hsieh (sunpoet) 

science/abinit: Fix build with HDF5 1.12.0+

    97c09dc

15:13 Po-Chuan Hsieh (sunpoet) 

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

    328ae40

19:11 Charlie Li (vishwin) 

textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate commit to facilitate easier cherry-picking for
quarterly.

PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)

    d63665f

08:27 Matthias Fechner (mfechner) 

textproc/libxml2: bump all dependencies

This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246

    247c7db

18:10 Po-Chuan Hsieh (sunpoet) 

science/netcdf-fortran: Update to 4.5.4

- Update MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-fortran/releases

    0459e7f

16:16 Po-Chuan Hsieh (sunpoet) 

science/abinit: Remove PY_PYGMENTS

With hat:	python

    f519be9

03:44 Yuri Victorovich (yuri) 

science/abinit: Update 9.4.1 -> 9.4.2

Reported by:	portscout

    45ababe

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

03:39 yuri 

science/abinit: Update 9.4.0 -> 9.4.1

Reported by:	portscout

 

18:03 yuri 

science/abinit: Update 9.2.2 -> 9.4.0

Reported by:	portscout

 

13:29 sunpoet 

Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103

 

14:04 sunpoet 

Bump PORTREVISION for science/netcdf shlib change

 

01:08 pkubaj 

science/abinit: enable on powerpc64le

 

22:18 pkubaj 

science/abinit: enable on powerpc64

 

00:42 yuri 

science/abinit: Update 8.10.3 -> 9.2.2

PR:		252221
Submitted by:	thierry

 

08:38 antoine 

Mark BROKEN: fails to build

m_polynomial_coeff.F90:2883:67:

 2800 |    do icoeff1=icoeff,ncoeff+nstr
      |                                2
......
 2883 | &                                    
index_coeff,list_combination,icoeff1,max_power_strain,&
      |                                                                   1
Error: Variable 'icoeff1' at (1) not definable inside loop beginning at (2) as
INTENT(INOUT) argument to subroutine 'computecombinationfromlist'
m_polynomial_coeff.F90:2643:26:

 2553 |    do icoeff1=icoeff,ncoeff+nstr
      |                                2
......
 2643 | &                        
icoeff1,icoeff_tot,natom,ncoeff,nstr,ncoeff_out,nrpt,nsym,power_disp+1,&
      |                          1
Error: Variable 'icoeff1' at (1) not definable inside loop beginning at (2) as
INTENT(INOUT) argument to subroutine 'computenorder'

Reported by:	pkg-fallout

 

08:21 yuri 

Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software

The taball for the 8.10.3 version was replaced on the upstream website with
significant updates in it.
The new tarball doesn't compile.
I preserved the previous 8.10.3 version tarball so that the package can build.
The new, 9.x version is upcoming.

 

20:51 antoine 

Deprecate ports broken for more than 6 months

 

21:56 jbeich 

Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020

 

16:26 antoine 

Mark a few ports BROKEN (unfetchable)

 

18:59 jbeich 

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

 

20:46 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

 

03:01 yuri 

science/abinit: Fix libomp.so in LDFLAGS (this also might fix the breakage on
13)

Reported by:	fallout

 

16:05 jbeich 

devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767

 

13:16 gerald 

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

 

23:43 yuri 

science/abinit: Broken on i386

Reported by:	fallout

 

06:09 yuri 

science/abinit: Add the 'test' target

 

05:37 yuri 

science/abinit: Add OPENMP and MPI options

 

05:46 yuri 

science/abinit: Update 8.10.2 -> 8.10.3

Reported by:	portscout

 

00:30 yuri 

science/abinit: Update 8.8.4 -> 8.10.2

 

01:35 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

 

22:18 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

 

20:24 yuri 

science/abinit: Update 8.8.3 -> 8.8.4

Reported by:	portscout

 

05:43 yuri 

science/abinit: Update 8.8.2 -> 8.8.3

Reported by:	portscout

 

05:49 yuri 

Re-add port: science/abinit: Full-featured atomic-scale first-principles
simulation software

I couldn't make MPI work, created a bug report.
Will add DOCS and EXAMPLES options later.

PR:		219025

 

13:09 tijl 

math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)

 

21:08 sunpoet 

- Update to 4.4.0
- Bump PORTREVISION for science/netcdf-fortran shlib change [1]

Changes:	https://github.com/Unidata/netcdf-fortran/blob/master/RELEASE_NOTES.md
Approved by:	portmgr (implicit, unstaged port) [1]

 

16:33 bapt 

Reset maintainership for ports not staged with no pending PR

With hat:	portmgr

 

19:16 antoine 

Fix LIB_DEPENDS

With hat:	portmgr

 

08:44 bapt 

Fix some non default LIB_DEPENDS

With hat:	portmgr

 

05:35 bapt 

Convert GMAKE to MAKE_CMD
Please note that lots of invocation of MAKE_CMD here are wrong as they do not
properly respect MAKE_ENV and friends

With hat:	portmgr

 

03:54 sunpoet 

- Bump PORTREVISION for dependency change from science/netcdf-ftn and
  science/netcdf3-ftn to science/netcdf-fortran

Approved by:	portmgr (bapt)

 

20:55 gerald 

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

 

17:15 tijl 

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

 

12:49 wg 

science/abinit: depends explicitly on "python"

Reported by:	exp-run (PR 184591)
Approved by:	portmgr (blanket)

 

00:52 gerald 

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)

 

22:48 bapt 

Add NO_STAGE all over the place in preparation for the staging support (cat:
science)

 

10:58 az 

- convert to the new perl5 framework
- convert USE_GMAKE to Uses

Approved by:	portmgr (bapt@, blanket)

 

16:06 bf 

Update math/gsl to 1.16 and adjust some dependent ports

 

17:58 hrs 

Rectify USE_TEX to support both of teTeX and TeXLive.

TEX_DEFAULT:
	A knob to choose teTeX or TeXLive.  One can specify in /etc/make.conf.

USE_TEX:
	A knob for port developers.  Valid keywords are listed in
	bsd.tex.mk.

 

02:00 hrs 

Remove *_DEPENDS from ports which depend on teTeX and add USE_TEX=tetex
instead to make migration to TeXLive easier.

 

05:26 dinoex 

- update png to 1.5.10

11:14 bf 

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

16:42 bf 

Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports

07:34 ade 

Sync to new bsd.autotools.mk

11:52 ade 

Punt autoconf267->autoconf268

19:57 ade 

Round one migration of ports from automake{19,110} to automake111

18:35 ade 

Autotools update.   Read ports/UPDATING 20100915 for details.

Approved by:    portmgr (for Mk/bsd.port.mk part)
Tested by:      Multiple -exp runs

02:56 linimon 

Don't build packages for this on the Tier-2 archs; we simply don't
have enough power on the nodes, and this winds up slowing down our
builds.

Hat:            portmgr

14:28 lwhsu 

- Fix build, abinit builds with science/netcdf3-ftn

Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
Approved by:    maho
Notified by:    pav

01:12 wen 

- Bump PORTREVISION to chase the update of math/gsl

06:47 dinoex 

- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi

11:46 dinoex 

- update to jpeg-8

20:33 makc 

Chase math/gsl update,
bump PORTREVISION

00:08 gerald 

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

13:57 dinoex 

- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin

10:26 maho 

Fix build with NOPORTDOCS, NOPORTEXAMPLES.

Submitted by:   QAT

15:22 thierry 

- Upgrade to 5.7.3
        Release notes at
        <http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html>

- enable bindings to get the headers
        This requires makemake and GSL.

Approved by:    Maho (maintainer)

18:27 thierry 

- Upgrade to 5.6.5;

- Install libabinit;

- Handle NOPORTDOCS and NOPORTEXAMPLES;

- s/test/regression-test/;

- Don't install under a versionned $PREFIX.

Approved by:    maho (maintainer)

23:16 maho 

Remove CONFIGURE_ENV

Submitted by:   gerald@

16:34 gerald 

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

06:18 rafan 

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
 - Remove CONFIGURE_TARGET hack in various bsd.*.mk
 - USE_GNOME=gnometarget is now an no-op

Changes to individual ports, other than removing the CONFIGURE_TARGET hack:

= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
  - comms/gnuradio
  - science/abinit
  - science/elmer-fem
  - science/elmer-matc
  - science/elmer-meshgen2d
  - science/elmerfront
  - science/elmerpost

= use x86_64 as ARCH
  - devel/g-wrap

= other changes
  - print/magicfilter
    GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf

Total # of ports modified:  1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)

PR:             126524 (obsoletes 52917)
Submitted by:   rafan
Tested on:      two pointyhat 7-amd64 exp runs (by pav)
Approved by:    portmgr (pav)

00:57 ade 

Conversion from (now defunct) autoconf-2.61 to autoconf-2.62

Tested by:      exp build run (erwin)

04:47 linimon 

Switch autoconf dependencies from 2.53 or 2.59 to 2.61.

PR:             ports/116639
Submitted by:   aDe

10:14 maho 

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

03:04 maho 

Temporary place distfile at maho/public_distdir.

Submitted by:   kris

06:52 maho 

A possible fix for fenner's distfile survey.

Submitted by:   fenner

04:24 maho 

* Update to 5.2.4
* make fetchable (fenner)
* Migrate to gfortran.
* Use gfortran compiled atlas/blas/lapack.

04:15 edwin 

Remove USE_REINPLACE from all categories starting with S

03:41 maho 

Update to 4.6.5

Notified by: fenner, kris, and edwin

09:24 maho 

update to 4.4.5, and make fetchable

Submitted by:   kris, linimon, fenner

05:54 maho 

Update to 4.4.4 (preferred production version, robust)

Submitted by:   edwin

08:45 maho 

Add abinit, calculates total energy, charge density
and electronic structure of systems.