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Port details
R-cran-DCluster Functions for the detection of spatial clusters of diseases
0.2.10 science on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.2.10Version of this port present on the latest quarterly branch.
Maintainer: tota@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2011-09-18 02:48:14
Last Update: 2024-02-07 13:03:02
Commit Hash: 44c9c61
License: GPLv2+
WWW:
https://cran.r-project.org/web/packages/DCluster/
Description:
A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/R-cran-DCluster-0.2.10/catalog.mk
  2. /usr/local/share/licenses/R-cran-DCluster-0.2.10/LICENSE
  3. /usr/local/share/licenses/R-cran-DCluster-0.2.10/GPLv2+
Collapse this list.
Dependency lines:
  • R-cran-DCluster>0:science/R-cran-DCluster
To install the port:
cd /usr/ports/science/R-cran-DCluster/ && make install clean
To add the package, run one of these commands:
  • pkg install science/R-cran-DCluster
  • pkg install R-cran-DCluster
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-DCluster
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1707273457 SHA256 (DCluster_0.2-10.tar.gz) = b1092401b1a4e7716d87ace66f191f02e9ee2a3cc25cbe74d4d41ac1d50ea406 SIZE (DCluster_0.2-10.tar.gz) = 38539

Packages (timestamps in pop-ups are UTC):
R-cran-DCluster
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.2.100.2.10-0.2.100.2.10---
FreeBSD:13:quarterly0.2.100.2.10-0.2.100.2.10---
FreeBSD:14:latest0.2.100.2.10-0.2.100.2.10---
FreeBSD:14:quarterly0.2.100.2.10-0.2.100.2.10---
FreeBSD:15:latest0.2.100.2.10n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. R : math/R
  2. gfortran12 : lang/gcc12
  3. as : devel/binutils
Runtime dependencies:
  1. R-cran-spdep>0 : math/R-cran-spdep
  2. R : math/R
  3. gfortran12 : lang/gcc12
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
science_R-cran-DCluster
USES:
cran:auto-plist,compiles
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (18 items)
Collapse this list.
  1. http://camoruco.ing.uc.edu.ve/cran/src/contrib/
  2. http://camoruco.ing.uc.edu.ve/cran/src/contrib/Archive/DCluster/
  3. http://cran.utstat.utoronto.ca/src/contrib/
  4. http://cran.utstat.utoronto.ca/src/contrib/Archive/DCluster/
  5. https://cloud.r-project.org/src/contrib/
  6. https://cloud.r-project.org/src/contrib/Archive/DCluster/
  7. https://cran.csiro.au/src/contrib/
  8. https://cran.csiro.au/src/contrib/Archive/DCluster/
  9. https://cran.ism.ac.jp/src/contrib/
  10. https://cran.ism.ac.jp/src/contrib/Archive/DCluster/
  11. https://cran.ma.imperial.ac.uk/src/contrib/
  12. https://cran.ma.imperial.ac.uk/src/contrib/Archive/DCluster/
  13. https://mirror.las.iastate.edu/CRAN/src/contrib/
  14. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/DCluster/
  15. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  16. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/DCluster/
  17. https://stat.ethz.ch/CRAN/src/contrib/
  18. https://stat.ethz.ch/CRAN/src/contrib/Archive/DCluster/
Collapse this list.

Number of commits found: 35

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.2.10
07 Feb 2024 13:03:02
commit hash: 44c9c61e934a8ef5aa4b6b306ed8f57721956c9bcommit hash: 44c9c61e934a8ef5aa4b6b306ed8f57721956c9bcommit hash: 44c9c61e934a8ef5aa4b6b306ed8f57721956c9bcommit hash: 44c9c61e934a8ef5aa4b6b306ed8f57721956c9b files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-DCluster: Update to 0.2-10

Reported by:	portscout
0.2.9
06 Sep 2023 12:37:35
commit hash: ad9fecf03cbc0f969c7a7bdb2f5d6ceca57dfb17commit hash: ad9fecf03cbc0f969c7a7bdb2f5d6ceca57dfb17commit hash: ad9fecf03cbc0f969c7a7bdb2f5d6ceca57dfb17commit hash: ad9fecf03cbc0f969c7a7bdb2f5d6ceca57dfb17 files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-DCluster: Update to 0.2-9

Reported by:	portscout
0.2.8_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.2.8
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.2.8
20 Jul 2022 14:22:51
commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361commit hash: 46196047a4df0f85aaee442799209fdaacf03361 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.2.8
09 Jun 2022 12:51:21
commit hash: 8c340b30462c09063162e35ff535e3ff3600280ecommit hash: 8c340b30462c09063162e35ff535e3ff3600280ecommit hash: 8c340b30462c09063162e35ff535e3ff3600280ecommit hash: 8c340b30462c09063162e35ff535e3ff3600280e files touched by this commit
TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-DCluster: Update to 0.2-8

- Fix LICENSE section
0.2.7_5
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.2.7_5
05 May 2020 16:07:54
Revision:534095Original commit files touched by this commit
jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
0.2.7_4
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
0.2.7_3
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
0.2.7_2
10 Mar 2018 17:46:06
Revision:464084Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
0.2.7_1
18 Jun 2017 18:09:17
Revision:443845Original commit files touched by this commit
dbn search for other commits by this committer
qa: add check for NO_ARCH

If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
0.2.7
01 Apr 2016 14:25:18
Revision:412349Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
0.2.7
13 Jun 2015 05:45:49
Revision:389320Original commit files touched by this commit
tota search for other commits by this committer
- Update to 0.2-7
- Replace tab with a single space after WWW: in pkg-descr
0.2.6_6
10 Sep 2014 20:50:37
Revision:367888Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
0.2.6_5
10 Mar 2014 20:55:22
Revision:347809Original commit files touched by this commit
gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
0.2.6_4
28 Dec 2013 10:28:41
Revision:337846Original commit files touched by this commit
dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
0.2.6_4
27 Nov 2013 18:56:44
Revision:335044Original commit files touched by this commit
dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
0.2.6_4
13 Nov 2013 08:19:35
Revision:333659Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
0.2.6_3
26 Oct 2013 00:52:36
Revision:331644Original commit files touched by this commit
gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.2.6_2
20 Sep 2013 22:48:31
Revision:327767Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
0.2.6_2
28 May 2013 15:15:06
Revision:319316Original commit files touched by this commit
bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
0.2.6_1
07 Mar 2013 04:21:35
Revision:313562Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
0.2.6
08 Jan 2013 12:39:31
Revision:310087Original commit files touched by this commit
tota search for other commits by this committer
- Update to 0.2-6
0.2.5_3
04 Jan 2013 17:51:39
Revision:309935Original commit files touched by this commit
bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
0.2.5_2
26 Jun 2012 23:57:00
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
0.2.5_1
04 May 2012 20:56:15
Original commit files touched by this commit
bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
0.2.5
05 Mar 2012 12:47:37
Original commit files touched by this commit
tota search for other commits by this committer
- Update to 0.2-5
- Fix LICENSE section
0.2.3_4
03 Mar 2012 16:59:36
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.2, and adjust dependent ports
0.2.3_3
18 Jan 2012 23:04:08
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.1, and adjust dependent ports
0.2.3_2
27 Nov 2011 07:02:15
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
0.2.3_1
15 Nov 2011 20:09:02
Original commit files touched by this commit
tota search for other commits by this committer
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
0.2.3_1
11 Oct 2011 14:19:46
Original commit files touched by this commit
bf search for other commits by this committer
update math/R to 2.13.2, and adjust dependent ports
0.2.3
18 Sep 2011 02:47:50
Original commit files touched by this commit
tota search for other commits by this committer
- Add a new port: science/R-cran-DCluster

  A set of functions for the detection of spatial clusters of disease
  using count data. Bootstrap is used to estimate sampling distributions
  of statistics.

  WWW:  http://cran.r-project.org/web/packages/DCluster/

Number of commits found: 35