| Port details |
- MOOSE-neural-simulator Multiphysics Object Oriented Simulation Environment
- 3.1.2_7 science
 =0      3.1.2_7Version of this port present on the latest quarterly branch.  DEPRECATED: Qt4 has been EOL since december 2015
 This port expired on: 2019-03-15
- Maintainer: yuri@FreeBSD.org
- Port Added: 2017-12-19 16:04:41
- Last Update: 2019-03-16 21:55:51
- SVN Revision: 495967
- Also Listed In: biology
- License: GPLv3
- WWW:
- http://moose.ncbs.res.in
- Description:
- MOOSE is designed to simulate neural systems ranging from biochemical signaling
to complex models of single neurons, circuits, and large networks. A typical
use case is to model neural activity-driven synaptic plasticity, in which
network activity to synapses triggers biochemical reaction-diffusion events,
which in turn modulate ion channels to give rise to synaptic plasticity.
MOOSE can operate at many levels of detail, from stochastic chemical
computations, to multicompartment single-neuron models, to spiking neuron
network models.
WWW: http://moose.ncbs.res.in
 cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- MOOSE-neural-simulator>0:science/MOOSE-neural-simulator
- No installation instructions:
- This port has been deleted.
- PKGNAME: MOOSE-neural-simulator
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1513628618
SHA256 (BhallaLab-moose-3.1.2-382-gc93d23a_GH0.tar.gz) = d338ba3b01b1569603dd5c6f12d47c576daf04323b845263ea968d2ab3bab47d
SIZE (BhallaLab-moose-3.1.2-382-gc93d23a_GH0.tar.gz) = 20350741
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- bash : shells/bash
- py27-numpy>0 : math/py-numpy@py27
- cmake : devel/cmake
- gfortran8 : lang/gcc8
- python2.7 : lang/python27
- as : devel/binutils
- Runtime dependencies:
-
- py27-numpy>0 : math/py-numpy@py27
- py27-matplotlib>=1.1.0 : math/py-matplotlib@py27
- py27-networkx>=1.0 : math/py-networkx@py27
- py27-pygraphviz>=0 : graphics/py-pygraphviz@py27
- py27-suds-jurko>=0.4 : net/py-suds-jurko@py27
- gfortran8 : lang/gcc8
- py27-qt4-core>=4.12.1 : devel/py-qt4-core@py27
- py27-qt4-gui>=4.12.1 : x11-toolkits/py-qt4-gui@py27
- py27-qt4-test>=4.12.1 : devel/py-qt4-test@py27
- python2.7 : lang/python27
- Library dependencies:
-
- libgsl.so : math/gsl
- libhdf5.so : science/hdf5
- libsbml.so : biology/libsbml
- libsz.so : science/szip
- libintl.so : devel/gettext-runtime
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for MOOSE-neural-simulator-3.1.2_7:
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
- Options name:
- N/A
- USES:
- cmake fortran gettext-runtime pyqt:4 python:2.7
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
3.1.2_7
16 Mar 2019 21:55:51
  |
tcberner |
Qt4 deprecation: Remove Qt4 and its consumes.
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015 (Only the first 15 lines of the commit message are shown above  ) |
3.1.2_7
05 Jan 2019 22:46:54
|
sunpoet |
Update science/hdf5 to 1.10.4
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR: 233070
Submitted by: wen |
3.1.2_6
25 Dec 2018 20:25:40
|
tcberner |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
3.1.2_6
12 Dec 2018 01:35:36
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
3.1.2_5
02 Dec 2018 15:41:48
|
rene |
Mark QT4 ports/functionality for removal on 2019-03-15
While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.
Submitted by: tcberner
Reviewed by: adridg, jhale, rene, tcberner
Approved by: portmgr (implicit, flavor hook)
Differential Revision: https://reviews.freebsd.org/D17741 |
3.1.2_5
22 Nov 2018 20:18:37
|
tcberner |
pyqt: Change install directories for Python flavor support
* PyQt could not be installed for multiple Python versions at
the same time, as there were conflicting files.
This patch creates Python-version versioned directories for
all these, and further installs binaries with a version number.
* Note, there might be some hickups for software that depends on
on of the .so's provided by PyQt5, which might not be found
anymore autmotically, and maybe need some LD-flaggery.
* Update PyQt5 to 5.10.1
* Mark www/py-qt5-webengine broken. It is unforuntately no longer
compatible with the old qt5-webengine-5.9.4 we ship.
PR: 232745
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D8714 |
3.1.2_4
05 Sep 2018 22:05:23
|
sunpoet |
Update science/hdf5 to 1.10.2
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR: 231009
Exp-run by: antoine |
3.1.2_3
29 Jul 2018 22:18:46
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542 |
3.1.2_2
23 Jun 2018 08:27:14
|
tcberner |
Update math/gsl to 2.5
PR: 229067 |
3.1.2_1
10 Mar 2018 17:46:06
|
gerald |
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079). |
3.1.2
30 Jan 2018 21:53:41
|
antoine |
Fix with DEFAULT_VERSIONS=python=3.x |
3.1.2
19 Dec 2017 16:04:34
|
yuri |
New port: science/MOOSE-neural-simulator: Multiphysics Object Oriented
Simulation Environment
Multiphysics Object Oriented Simulation Environment
MOOSE-neural-simulator allows to simulate
- chemical and biochemical reactions
- networks of neurons
- neural networks
This project is commonly referred to as MOOSE, in the capitalized form.
There is another science project called MOOSE, completely unrelated to this one,
which will also be ported.
MOOSE-neural-simulator is a candidate for the future 'chemistry' category in
case it will be approved.
Approved by: adamw (mentor)
Differential Revision: https://reviews.freebsd.org/D13539 |
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