Ports marked with a ^* actually reside within another category but have science listed as a secondary category.

py-mmtf-python MMTF (Macromolecular Transmission Format) Python API

1.1.3_1 1.1.3_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-05-13 17:14:24

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mmtf-python>0:science/py-mmtf-python@${PY_FLAVOR}

py-molmod Collection of molecular modelling tools for python

1.4.8_1 1.4.8_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 03:11:13

Also Listed In: python

License: GPLv3+

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}molmod>0:science/py-molmod@${PY_FLAVOR}

py-moltemplate Tool to prepare simulations of molecules, complex molecular assemblies

2.20.21 2.20.21Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-05-15 03:34:42

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}moltemplate>0:science/py-moltemplate@${PY_FLAVOR}

py-mp-api API for server for the Materials Project

0.34.0 0.34.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-03 17:51:22

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mp-api>0:science/py-mp-api@${PY_FLAVOR}

py-mpcontribs-client Client library for MPContribs API on contribs-api.materialsproject.org

5.4.2 5.4.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-03 05:51:15

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mpcontribs-client>0:science/py-mpcontribs-client@${PY_FLAVOR}

py-mrchem MultiResolution Chemistry

1.1.4 1.1.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-11-15 03:09:24

Also Listed In: python

License: GPLv3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}mrchem>0:science/py-mrchem@${PY_FLAVOR}

py-ncrystal Library for thermal neutron transport in crystals and other materials

3.8.0 3.8.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-11-08 22:06:04

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ncrystal>0:science/py-ncrystal@${PY_FLAVOR}

py-netCDF4 Python Interface to the NetCDF Library (versions 3 and 4)

1.6.5 1.6.5Version of this port present on the latest quarterly branch.

Maintainer: bofh@FreeBSD.org

Port Added: 2009-02-23 20:19:59

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}netCDF4>0:science/py-netCDF4@${PY_FLAVOR}

py-netcdf-flattener Flatten NetCDF files while preserving references

1.2.0_1 1.2.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-12-10 21:31:52

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}netcdf-flattener>0:science/py-netcdf-flattener@${PY_FLAVOR}

py-nglview IPython widget to view molecular structures and trajectories

3.0.7 3.0.7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-01 09:45:36

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nglview>0:science/py-nglview@${PY_FLAVOR}

py-nibabel Read/write some common neuroimaging file formats

5.2.1 5.2.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-01-21 02:07:56

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR}

py-nilearn Statistical learning for neuroimaging in Python

0.10.3 0.10.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-01-21 03:53:55

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}nilearn>0:science/py-nilearn@${PY_FLAVOR}

py-obspy Python framework for seismological observatories

1.4.0_1 1.4.0_1Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2013-05-17 13:55:51

Also Listed In: python

License: LGPL3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}obspy>0:science/py-obspy@${PY_FLAVOR}

py-oddt Open Drug Discovery Toolkit

0.7_2 0.7_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-02-09 22:53:28

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}oddt>0:science/py-oddt@${PY_FLAVOR}

py-openbabel Chemical toolbox designed to speak the many languages of chemical data

3.1.1.1 3.1.1.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2008-07-19 14:01:08

License: GPLv2+

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openbabel>0:science/py-openbabel@${PY_FLAVOR}

py-openpiv Python module for Particle Image Velocimetry

0.23.8_2 0.23.8_2Version of this port present on the latest quarterly branch.

Maintainer: makc@FreeBSD.org

Port Added: 2018-04-02 08:44:07

Also Listed In: python

License: GPLv3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openpiv>0:science/py-openpiv@${PY_FLAVOR}

py-optking Python version of the PSI4 geometry optimization program by R.A. King

0.2.1_1 0.2.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-08 11:12:25

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}optking>0:science/py-optking@${PY_FLAVOR}

py-paida Pure Python scientific analysis package

3.2.1.2.10_1 3.2.1.2.10_1Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2005-07-18 16:23:21

Also Listed In: python

License: not specified in port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}paida>0:science/py-paida@${PY_FLAVOR}

py-paramz Parameterization framework

0.9.5_2 0.9.5_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-12-18 06:20:17

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}paramz>0:science/py-paramz@${PY_FLAVOR}

py-penaltymodel DWave: Utilities and interfaces for using penalty models

1.1.0 1.1.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 23:03:10

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}penaltymodel>0:science/py-penaltymodel@${PY_FLAVOR}

py-phono3py Software to calculate phonon-phonon interaction and related properties

1.22.3_2 1.22.3_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 05:37:30

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}phono3py>0:science/py-phono3py@${PY_FLAVOR}

py-phonopy Package for phonon calculations at harmonic and quasi-harmonic levels

2.22.1 2.22.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-14 05:01:29

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}phonopy>0:science/py-phonopy@${PY_FLAVOR}

py-pupynere NetCDF file reader and writer

1.0.15_9 1.0.15_9Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2013-09-02 11:27:57

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pupynere>0:science/py-pupynere@${PY_FLAVOR}

py-py3Dmol IPython interface for embedding 3Dmol.js views

2.1.0 2.1.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-15 20:57:13

Also Listed In: python

License: WTFPL

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}py3Dmol>0:science/py-py3Dmol@${PY_FLAVOR}

py-pyaixi Implementation of the MC-AIXI-CTW AI algorithm

1.0.4_1 1.0.4_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2013-12-08 14:12:58

Also Listed In: python

License: CC-BY-SA-3.0

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyaixi>0:science/py-pyaixi@${PY_FLAVOR}

py-pyberny Optimizer of molecular geometries with respect to the total energy

0.6.3_1 0.6.3_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-10-16 23:57:26

License: MPL20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyberny>0:science/py-pyberny@${PY_FLAVOR}

py-pycsw OGC CSW server implementation

2.6.1_1 2.6.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-01-18 18:24:26

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pycsw>0:science/py-pycsw@${PY_FLAVOR}

py-pydicom Read, modify, and write DICOM files with Python code

2.4.4 2.4.4Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2009-01-16 00:23:58

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pydicom>0:science/py-pydicom@${PY_FLAVOR}

py-pygeodesy Pure Python geodesy tools

23.4.23 23.4.23Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-12-06 20:30:56

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygeodesy>0:science/py-pygeodesy@${PY_FLAVOR}

py-pygeometa Generate metadata for geospatial datasets

0.15.3 0.15.3Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-01-18 18:24:42

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygeometa>0:science/py-pygeometa@${PY_FLAVOR}

py-pygmo2 Python platform to perform parallel computations of optimisation tasks

2.19.6 2.19.6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-06-09 18:53:08

Also Listed In: graphics

License: MPL20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pygmo2>0:science/py-pygmo2@${PY_FLAVOR}

py-pyked Package for manipulating Chemical Kinetics Experimental Data files

0.4.1.16_1 0.4.1.16_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-09-11 07:15:15

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyked>0:science/py-pyked@${PY_FLAVOR}

py-pymatgen Python Materials Genomics is a robust materials analysis code

2022.7.19_1 2022.7.19_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-15 23:49:49

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymatgen>0:science/py-pymatgen@${PY_FLAVOR}

py-pymatgen-analysis-alloys PyMatgen add-on library with classes useful for describing alloys

0.0.6 0.0.6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-02 16:42:35

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymatgen-analysis-alloys>0:science/py-pymatgen-analysis-alloys@${PY_FLAVOR}

py-pymbd Many-body dispersion library

0.12.5_1 0.12.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-03 17:54:02

License: MPL20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymbd>0:science/py-pymbd@${PY_FLAVOR}

py-pymeeus Python implementation of Jean Meeus astronomical routines

0.5.12^* 0.5.12Version of this port present on the latest quarterly branch.

Maintainer: bofh@FreeBSD.org

Port Added: 2019-12-15 08:24:55

Also Listed In: astro python

License: LGPL3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymeeus>0:astro/py-pymeeus@${PY_FLAVOR}

py-pymol OpenGL-based molecular visualization system

2.5.0.97_2 2.5.0.97_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-12-19 19:49:25

Also Listed In: biology python

License: PyMOL

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pymol>0:science/py-pymol@${PY_FLAVOR}

py-pyosf Python library for synching with OpenScienceFramework projects

1.0.5 1.0.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-24 06:38:58

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyosf>0:science/py-pyosf@${PY_FLAVOR}

py-pyprecice Coupling library for partitioned multi-physics simulations

2.5.0.4 2.5.0.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-20 16:54:20

License: LGPL3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyprecice>0:science/py-pyprecice@${PY_FLAVOR}

py-pyqtgraph Scientific graphics and GUI library for Python

0.13.3^* 0.13.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-11 08:49:28

People watching this port, also watch:: libavif, tweak, llvm-devel, libXft, py39-tensorflow

Also Listed In: graphics python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyqtgraph>0:graphics/py-pyqtgraph@${PY_FLAVOR}

py-pyqubo DWave: Python DSL for constructing QUBOs from mathematical expressions

1.4.0_1 1.4.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-15 21:15:14

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyqubo>0:science/py-pyqubo@${PY_FLAVOR}

py-pysal Cross-platform library of spatial analysis functions

23.1 23.1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2014-09-04 16:24:39

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pysal>0:science/py-pysal@${PY_FLAVOR}

py-pyscf Python module for quantum chemistry

2.5.0 2.5.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-06-05 20:03:12

Also Listed In: python

License: BSD2CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyscf>0:science/py-pyscf@${PY_FLAVOR}

py-pyteomics Python modules for proteomics data analysis

4.7.1_1 4.7.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2015-11-02 09:24:59

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pyteomics>0:science/py-pyteomics@${PY_FLAVOR}

py-qcelemental Essentials for quantum chemistry

0.27.1 0.27.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-03-31 10:59:37

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qcelemental>0:science/py-qcelemental@${PY_FLAVOR}

py-qcengine Quantum chemistry program executor and IO standardizer (QCSchema)

0.29.0 0.29.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-03-31 09:35:14

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qcengine>0:science/py-qcengine@${PY_FLAVOR}

py-qspin Learn quantum spin and entanglement

2.3.3 2.3.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-11-10 21:55:35

Also Listed In: education

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}qspin>0:science/py-qspin@${PY_FLAVOR}

py-quantities Support for physical quantities with units, based on numpy

0.15.0 0.15.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-29 20:37:59

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}quantities>0:science/py-quantities@${PY_FLAVOR}

py-rmf Library to support reading and writing of Rich Molecular Format files

1.6.0 1.6.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-07-01 06:49:32

Also Listed In: graphics

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}rmf>0:science/py-rmf@${PY_FLAVOR}

py-rmsd Calculate root-mean-square deviation (RMSD) between coordinate sets

1.4_1 1.4_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-01-18 02:03:56

License: BSD2CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}rmsd>0:science/py-rmsd@${PY_FLAVOR}

py-rtree R-Tree Spatial Index For Python GIS

1.2.0^* 1.2.0Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2008-06-20 16:53:36

Also Listed In: devel python

License: LGPL21

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}rtree>0:devel/py-rtree@${PY_FLAVOR}

py-ruffus Lightweight library for computational pipelines

2.8.4 2.8.4Version of this port present on the latest quarterly branch.

Maintainer: kai@FreeBSD.org

Port Added: 2019-07-11 16:51:11

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ruffus>0:science/py-ruffus@${PY_FLAVOR}

py-scikit-fuzzy Fuzzy logic toolkit for SciPy

0.4.2_3 0.4.2_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2015-12-31 13:41:26

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-fuzzy>0:science/py-scikit-fuzzy@${PY_FLAVOR}

py-scikit-learn Machine learning algorithms for python

1.4.0 1.4.0Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2012-10-19 12:24:11

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR}

py-scikit-optimize Sequential model-based optimization toolbox

0.10.1 0.10.1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-04-21 19:33:30

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-optimize>0:science/py-scikit-optimize@${PY_FLAVOR}

py-scikit-sparse Sparse matrix package

0.4.8_8 0.4.8_8Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2015-06-14 12:39:21

Also Listed In: python

License: BSD2CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scikit-sparse>0:science/py-scikit-sparse@${PY_FLAVOR}

py-scimath Scientific and Mathematical calculations

5.0.0_1 5.0.0_1Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2011-02-20 03:54:19

Also Listed In: math python

License: BSD3CLAUSE LGPL3

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scimath>0:science/py-scimath@${PY_FLAVOR}

py-scipy Scientific tools for Python

1.11.1_2 1.11.1_2Version of this port present on the latest quarterly branch.

Maintainer: python@FreeBSD.org

Port Added: 2004-08-26 08:44:44

People watching this port, also watch:: python, py39-matplotlib, pftop, thunderbird

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}

py-scoria Lightweight molecule manipulation codebase

1.0.5_1 1.0.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-11-16 18:27:54

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}scoria>0:science/py-scoria@${PY_FLAVOR}

py-sdf Simple SDF mesh generation in Python

0.1_2 0.1_2Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2022-11-19 16:45:11

People watching this port, also watch:: python, fr-homard

Also Listed In: cad python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}sdf>0:science/py-sdf@${PY_FLAVOR}

py-segregation Analytics for spatial and non-spatial segregation in Python

2.4.2 2.4.2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:36:33

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}segregation>0:science/py-segregation@${PY_FLAVOR}

py-segyio Python binding for segyio, the seismic data library

1.9.12 1.9.11_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-11-08 02:56:16

Also Listed In: python

License: LGPL3+

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}segyio>0:science/py-segyio@${PY_FLAVOR}

py-signac Manage large and heterogeneous data spaces on the file system

2.2.0 2.2.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-05-04 16:27:06

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}signac>0:science/py-signac@${PY_FLAVOR}

py-sklearn-pandas Pandas integration with sklearn

2.2.0_1 2.2.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2022-01-28 23:30:27

Also Listed In: python

License: BSD2CLAUSE ZLIB

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}sklearn-pandas>0:science/py-sklearn-pandas@${PY_FLAVOR}

py-skrebate Relief-based feature selection algorithms

0.62_1 0.62_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-04-25 20:39:28

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}skrebate>0:science/py-skrebate@${PY_FLAVOR}

py-spaghetti Analysis of Network-constrained Spatial Data

1.7.4 1.7.4Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:35:02

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}spaghetti>0:science/py-spaghetti@${PY_FLAVOR}

py-spglib Library for finding and handling crystal symmetries (python binding)

2.4.0 2.3.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-15 22:28:37

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}spglib>0:science/py-spglib@${PY_FLAVOR}

py-tensorflow Computation using data flow graphs for scalable machine learning

2.9.1_14 2.9.1_14Version of this port present on the latest quarterly branch.

BROKEN: variable has incomplete type 'StateSaver'
IGNORE: is marked as broken: variable has incomplete type 'StateSaver'

Maintainer: amzo1337@gmail.com

Port Added: 2017-08-15 12:08:16

People watching this port, also watch:: tweak, llvm-devel, libXft, aide, libavif

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}tensorflow>0:science/py-tensorflow@${PY_FLAVOR}

py-thewalrus Open source library for hafnian calculation

0.21.0 0.21.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-01 03:45:10

Also Listed In: python

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}thewalrus>0:science/py-thewalrus@${PY_FLAVOR}

py-tobler Areal Interpolation

0.9.0_2 0.9.0_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:37:06

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}tobler>0:science/py-tobler@${PY_FLAVOR}

py-trainstation Convenient training of linear models

1.0_1 1.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-03-07 20:15:55

Also Listed In: python

License: GPLv3+

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}trainstation>0:science/py-trainstation@${PY_FLAVOR}

py-trx-python Experiments with new file format for tractography

0.2.9 0.2.9Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-12-17 19:40:40

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}trx-python>0:science/py-trx-python@${PY_FLAVOR}

py-tweedledum Library for analysis, compilation, synthesis of quantum circuits

1.1.1 1.1.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-08 03:54:26

Also Listed In: python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}tweedledum>0:science/py-tweedledum@${PY_FLAVOR}

py-vedo Python module for scientific analysis and visualization of 3D objects

2023.5.0 2023.5.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-01-19 23:06:11

Also Listed In: graphics python

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}vedo>0:science/py-vedo@${PY_FLAVOR}

py-veusz Scientific plotting package

3.6.2_3 3.6.2_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-01 12:17:13

License: GPLv2

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}veusz>0:science/py-veusz@${PY_FLAVOR}

py-xbout Collect data from BOUT++ runs in python using xarray

0.3.5_2 0.3.5_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-25 01:24:23

Also Listed In: education

License: APACHE20

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}xbout>0:science/py-xbout@${PY_FLAVOR}

py-zfp High throughput library for compressed floating-point arrays

1.0.0_1^* 1.0.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-11-01 10:39:14

Also Listed In: devel

License: MIT

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}zfp>0:devel/py-zfp@${PY_FLAVOR}

pybrain Swiss Army knife for neural networking

0.3.3_5 0.3.3_5Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2009-11-19 13:45:09

Also Listed In: python

License: BSD3CLAUSE

Dependency lines:

• pybrain>0:science/pybrain

pynn Simulator-independent language for building neuronal network models

0.12.2 0.12.2Version of this port present on the latest quarterly branch.

Maintainer: wen@FreeBSD.org

Port Added: 2010-05-19 05:32:10

Also Listed In: python

License: CeCILL

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}pynn>0:science/pynn@${PY_FLAVOR}

q Molecular Dynamics (MD) tools

6.0_1 6.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-05-24 01:57:06

License: GPLv2+

Dependency lines:

• q>0:science/q

qbox First-principles molecular dynamics code

1.76.4 1.76.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-08-31 06:45:42

License: GPLv2+

Dependency lines:

• qbox>0:science/qbox

qcl Quantum computer simulator

0.6.7 0.6.7Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2006-01-24 01:09:06

Also Listed In: math

License: GPLv2+

Dependency lines:

• qcl>0:science/qcl

qiskit-aer Quantum circuits simulator submodule of the Qiskit framework

0.10.4_4 0.10.4_4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-03-12 01:06:03

License: APACHE20

Dependency lines:

• qiskit-aer>0:science/qiskit-aer

qmcpack Many-body ab initio Quantum Monte Carlo code for quantum chemistry

3.15.0_3 3.15.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-08-20 07:45:08

License: BSD3CLAUSE

Dependency lines:

• qmcpack>0:science/qmcpack

qt6-quick3dphysics High-level API for physics simulation

6.6.3 6.6.3Version of this port present on the latest quarterly branch.

Maintainer: kde@FreeBSD.org

Port Added: 2023-10-24 21:27:41

License: LGPL21

Dependency lines:

• qt6-quick3dphysics>0:science/qt6-quick3dphysics

quantum-espresso Package for research in electronic structure, simulation, optimization

7.3.1_1 7.3.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-07-18 21:52:13

License: GPLv2

Dependency lines:

• quantum-espresso>0:science/quantum-espresso

quantum-espresso-pseudopotentials Pseudopotentials for use with Quantum Espresso

g20220916 g20220916Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-11-21 22:35:03

License: GPLv2

Dependency lines:

• quantum-espresso-pseudopotentials>0:science/quantum-espresso-pseudopotentials

quantum-jet Cross-platform header-only library for simulating quantum circuits

0.2.2.2_2 0.2.2.2_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-05-31 20:03:06

License: APACHE20

Dependency lines:

• quantum-jet>0:science/quantum-jet

qwalk Quantum Monte Carlo package for quantum chemistry computations

1.0.1.300_6 1.0.1.300_6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-08-21 04:31:32

License: GPLv2

Dependency lines:

• qwalk>0:science/qwalk

rapid Robust and Accurate Polygon Interference Detection

2.01_1^* 2.01_1Version of this port present on the latest quarterly branch.

Maintainer: jwb@FreeBSD.org

Port Added: 2008-02-09 01:59:47

Also Listed In: graphics math

License: UNKNOWN

Dependency lines:

• rapid>0:math/rapid

rdkit Collection of cheminformatics and machine-learning software

2023.09.6 2023.09.6Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-22 08:24:27

License: BSD3CLAUSE

Dependency lines:

• rdkit>0:science/rdkit

rmf Library to support reading and writing of Rich Molecular Format files

1.6.0_1 1.6.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-29 09:04:35

Also Listed In: graphics

License: APACHE20

Dependency lines:

• rmf>0:science/rmf

root Data analysis framework made at CERN

6.30.02_1^* 6.30.02_1Version of this port present on the latest quarterly branch.

Maintainer: erik@tenku.dk

Port Added: 2004-04-18 13:53:10

People watching this port, also watch:: squid, python, dnetc, exim

Also Listed In: devel math parallel python

License: LGPL21

Dependency lines:

• root>0:devel/root

rubygem-ai4r Various Ruby artificial intelligence algorithm implementations

1.13 1.13Version of this port present on the latest quarterly branch.

Maintainer: ruby@FreeBSD.org

Port Added: 2011-03-25 12:08:52

Also Listed In: rubygems

License: MPL11

Dependency lines:

• rubygem-ai4r>0:science/rubygem-ai4r

rubygem-cdo Ruby binding to CDO (Climate Data Operators)

1.5.1_1 1.5.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2014-09-13 15:20:39

Also Listed In: rubygems

License: BSD3CLAUSE

Dependency lines:

• rubygem-cdo>0:science/rubygem-cdo

rubygem-rgeo Geospatial data library for Ruby (RGeo)

3.0.1 3.0.1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-04-07 16:33:07

Also Listed In: rubygems

License: BSD3CLAUSE

Dependency lines:

• rubygem-rgeo>0:science/rubygem-rgeo

rubygem-rgeo-geojson GeoJSON formatting and parsing in Ruby

2.1.1 2.1.1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-04-07 16:33:43

Also Listed In: rubygems

License: BSD3CLAUSE

Dependency lines:

• rubygem-rgeo-geojson>0:science/rubygem-rgeo-geojson

rubygem-rgeo-proj4 Proj.4 extension for RGeo

4.0.0_3 4.0.0_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-04-07 16:34:19

Also Listed In: rubygems

License: MIT

Dependency lines:

• rubygem-rgeo-proj4>0:science/rubygem-rgeo-proj4

rubygem-rgeo-shapefile RGeo module for reading the ESRI shapefile format

3.1.0 3.1.0Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2018-04-07 16:34:03

Also Listed In: rubygems

License: BSD3CLAUSE

Dependency lines:

• rubygem-rgeo-shapefile>0:science/rubygem-rgeo-shapefile

rubygem-ruby-netcdf Ruby interface to the NetCDF scientific IO library

0.8.0_1 0.8.0_1Version of this port present on the latest quarterly branch.

Maintainer: ruby@FreeBSD.org

Port Added: 2015-05-24 15:36:00

Also Listed In: rubygems

License: BSD2CLAUSE

Dependency lines:

• rubygem-ruby-netcdf>0:science/rubygem-ruby-netcdf