Port details on branch 2022Q2 |
- snakemake Workflow management system
- 6.15.5_1 misc =0 6.15.5_1Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2018-11-27 08:05:50
- Last Update: 2023-06-27 19:34:34
- Commit Hash: 3d9a815
- Also Listed In: python
- License: MIT
- WWW:
- https://github.com/snakemake/snakemake
- Description:
- Snakemake is a workflow management system that aims to reduce the complexity of
creating workflows by providing a fast and comfortable execution environment,
together with a clean and modern specification language in python style.
Snakemake workflows are essentially Python scripts extended by declarative code
to define rules. Rules describe how to create output files from input files.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- snakemake>0:misc/snakemake
- To install the port:
- cd /usr/ports/misc/snakemake/ && make install clean
- To add the package, run one of these commands:
- pkg install misc/snakemake
- pkg install snakemake
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: snakemake
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1651249125
SHA256 (snakemake-6.15.5.tar.gz) = e3297898f96c358b2c1a883aeb0f3540f983943cd564511510b9112a37fcf1f4
SIZE (snakemake-6.15.5.tar.gz) = 281352
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-appdirs>0 : devel/py-appdirs@py39
- py39-connection_pool>=0.0.3>0 : devel/py-connection_pool@py39
- py39-configargparse>0 : devel/py-configargparse@py39
- py39-datrie>0 : devel/py-datrie@py39
- py39-docutils>0 : textproc/py-docutils@py39
- py39-filelock>0 : sysutils/py-filelock@py39
- py39-gitpython>0 : devel/py-gitpython@py39
- py39-jsonschema>0 : devel/py-jsonschema@py39
- py39-nbformat>0 : devel/py-nbformat@py39
- py39-PuLP>=2.0 : math/py-PuLP@py39
- py39-psutil>0 : sysutils/py-psutil@py39
- py39-ratelimiter>0 : devel/py-ratelimiter@py39
- py39-requests>0 : www/py-requests@py39
- py39-smart-open>=3.0 : net/py-smart-open@py39
- py39-stopit>0 : devel/py-stopit@py39
- py39-tabulate>0 : devel/py-tabulate@py39
- py39-toposort>0 : devel/py-toposort@py39
- py39-wrapt>0 : devel/py-wrapt@py39
- py39-yaml>0 : devel/py-yaml@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- misc_snakemake
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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