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Port details
py-spglm Sparse generalize linear models
1.1.0 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.0Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-03 19:58:41
Last Update: 2024-02-29 07:18:32
Commit Hash: 5d4139f
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://pysal.org/spglm/
https://github.com/pysal/spglm
Description:
This module is an adaptation of a portion of GLM functionality from the Statsmodels package, this it has been simplified and customized for the purposes of serving as the base for several other PySAL modules, namely SpInt and GWR. Currently, it supports the estimation of Gaussian, Poisson, and Logistic regression using only iteratively weighted least squares estimation (IWLS). One of the large differences this module and the functions avaialble in the Statsmodels package is that the custom IWLS routine is fully sparse compatible, which was necesary for the very sparse design matrices that arise in constrained spatial interaction models. The somewhat limited functionality and computation of only a subset of GLM diagnostics also decreases the computational overhead. Another difference is that this module also supports the estimation of QuasiPoisson models. One caveat is that this custom IWLS routine currently generates estimates by directly solves the least squares normal equations rather than using a more robust method like the pseudo inverse. For more robust estimation of ill conditioned data and a fuller GLM framework we suggest using the original GLM functionality from Statsmodels.
HomepageHomepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}spglm>0:math/py-spglm@${PY_FLAVOR}
To install the port:
cd /usr/ports/math/py-spglm/ && make install clean
To add the package, run one of these commands:
  • pkg install math/py-spglm
  • pkg install py39-spglm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-spglm listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-spglm
Package flavors (<flavor>: <package>)
  • py39: py39-spglm
distinfo:
TIMESTAMP = 1698341063 SHA256 (spglm-1.1.0.tar.gz) = 20519dc38be9d660a28109bb1b89d1068454e79f6413bab2e3987db5bf959327 SIZE (spglm-1.1.0.tar.gz) = 616651

Packages (timestamps in pop-ups are UTC):
py39-spglm
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly1.1.01.1.0--1.1.0-1.1.0-
FreeBSD:14:latest1.1.01.1.0-1.1.01.1.0---
FreeBSD:14:quarterly1.1.01.1.0--1.1.0-1.1.0-
FreeBSD:15:latest1.1.01.1.0n/a1.1.0n/a-1.1.01.1.0
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=61.0 : devel/py-setuptools@py39
  2. py39-setuptools-scm>=6.2 : devel/py-setuptools-scm@py39
  3. py39-wheel>=0 : devel/py-wheel@py39
  4. python3.9 : lang/python39
  5. py39-build>=0 : devel/py-build@py39
  6. py39-installer>=0 : devel/py-installer@py39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-libpysal>=4.0.0 : science/py-libpysal@py39
  2. py39-numpy>=1.3,1 : math/py-numpy@py39
  3. py39-scipy>=0.11 : science/py-scipy@py39
  4. py39-spreg>=1.0.4 : math/py-spreg@py39
  5. python3.9 : lang/python39
This port is required by:
for Run
  1. graphics/py-mgwr
  2. math/py-spint
  3. science/py-pysal

Configuration Options:
No options to configure
Options name:
math_py-spglm
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/s/spglm/
  2. https://pypi.org/packages/source/s/spglm/
Collapse this list.

Number of commits found: 11

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.1.0
29 Feb 2024 07:18:32
commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
devel/py-setuptools-scm: update to 8.0.4

Directory and PORTNAME changed to match normalised name in release
tarball; consumers updated to match.

Although setuptools itself is specified as a run dependency in the
Python package metadata, it is currently left out here to prevent
environment pollution until at least PR 270510 is committed.
Additionally, this version of setuptools-scm requires setuptools>=61,
which means this version is only meant for USE_PYTHON=pep517 ports
as all USE_PYTHON=distutils ports will switch to devel/py-setuptools58
also after PR 270510. science/py-emmet-core is switched to
devel/py-setuptools_scm7 accordingly, as it specifies setuptools-scm<8.
devel/py-{flit-scm,hatch-vcs} have ${PY_SETUPTOOLS} added to
RUN_DEPENDS to compensate.

Further details: https://wiki.freebsd.org/Python/setuptools

Reported by: yuri
Co-authored by: matthew
Exp-run by: antoine (earlier iteration)
Approved by: yuri (science/py-emmet-core, previous iteration)
PR: 272134
Differential Revision: https://reviews.freebsd.org/D39288
1.1.0
01 Nov 2023 02:08:28
commit hash: 649d9c2ed573f14457827a4c76eab2665b77d01dcommit hash: 649d9c2ed573f14457827a4c76eab2665b77d01dcommit hash: 649d9c2ed573f14457827a4c76eab2665b77d01dcommit hash: 649d9c2ed573f14457827a4c76eab2665b77d01d files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
math/py-spglm: Update to 1.1.0

- Update WWW
- Convert to USE_PYTHON=pep517

Changes:	https://github.com/pysal/spglm/releases
1.0.8_1
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.0.8_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.0.8
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.0.8
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.0.8
20 Jul 2022 14:22:24
commit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5dacommit hash: f53eb28489aa8f30712cd8772d1a0e05c394a5da files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.0.8
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.0.8
30 Jan 2021 13:29:58
Revision:563407Original commit files touched by this commit
sunpoet search for other commits by this committer
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
1.0.8
03 Jan 2021 19:57:28
Revision:560045Original commit files touched by this commit Sanity Test Failure
sunpoet search for other commits by this committer
Add py-spglm 1.0.8

This module is an adaptation of a portion of GLM functionality from the
Statsmodels package, this it has been simplified and customized for the purposes
of serving as the base for several other PySAL modules, namely SpInt and GWR.
Currently, it supports the estimation of Gaussian, Poisson, and Logistic
regression using only iteratively weighted least squares estimation (IWLS). One
of the large differences this module and the functions avaialble in the
Statsmodels package is that the custom IWLS routine is fully sparse compatible,
which was necesary for the very sparse design matrices that arise in constrained
spatial interaction models. The somewhat limited functionality and computation
of only a subset of GLM diagnostics also decreases the computational overhead.
Another difference is that this module also supports the estimation of
QuasiPoisson models. One caveat is that this custom IWLS routine currently
generates estimates by directly solves the least squares normal equations rather
than using a more robust method like the pseudo inverse. For more robust
estimation of ill conditioned data and a fuller GLM framework we suggest using
the original GLM functionality from Statsmodels.

WWW: https://github.com/pysal/spglm

Number of commits found: 11