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Port details
py-pyodesys Straightforward numerical integration of ODE systems from Python
0.14.3_1 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.14.2Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-01 10:12:00
Last Update: 2024-05-20 10:33:03
Commit Hash: b66e494
Also Listed In: python
License: BSD2CLAUSE
WWW:
https://github.com/bjodah/pyodesys
Description:
pyodesys provides a straightforward way of numerically integrating systems of ordinary differential equations (initial value problems). It unifies the interface of several libraries for performing the numerical integration as well as several libraries for symbolic representation. It also provides a convenience class for representing and integrating ODE systems defined by symbolic expressions, e.g. SymPy expressions. This allows the user to write concise code and rely on pyodesys to handle the subtle differences between libraries. The numerical integration is performed using either: * scipy.integrate.ode * pygslodeiv2 * pyodeint * pycvodes
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pyodesys>0:math/py-pyodesys@${PY_FLAVOR}
To install the port:
cd /usr/ports/math/py-pyodesys/ && make install clean
To add the package, run one of these commands:
  • pkg install math/py-pyodesys
  • pkg install py39-pyodesys
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-pyodesys listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-pyodesys
Package flavors (<flavor>: <package>)
  • py39: py39-pyodesys
distinfo:
TIMESTAMP = 1714019941 SHA256 (pyodesys-0.14.3.tar.gz) = 7a5320dbcadc33c2d2b83c48393c03b4bd97f76c9c9fb075d8dbd28faddd19f6 SIZE (pyodesys-0.14.3.tar.gz) = 96359

Packages (timestamps in pop-ups are UTC):
py39-pyodesys
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.14.30.14.3--0.14.3---
FreeBSD:13:quarterly0.14.20.14.2--0.14.2-0.14.2-
FreeBSD:14:latest0.14.30.14.3--0.14.3---
FreeBSD:14:quarterly0.14.20.14.2--0.14.2-0.14.2-
FreeBSD:15:latest0.14.30.14.3n/a-n/a-0.14.2-
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. Xvfb : x11-servers/xorg-server@xvfb
  2. 8x13O.pcf.gz : x11-fonts/xorg-fonts-miscbitmaps
  3. fonts.alias : x11-fonts/font-alias
  4. base : x11/xkeyboard-config
  5. xkbcomp : x11/xkbcomp
  6. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  7. python3.9 : lang/python39
Test dependencies:
  1. matrix.hpp : devel/boost-libs
  2. gsl_errno.h : math/gsl
  3. py39-pytest>=7,1 : devel/py-pytest@py39
  4. python3.9 : lang/python39
Runtime dependencies:
  1. py39-matplotlib>=2.2.5 : math/py-matplotlib@py39
  2. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  3. py39-notebook>=5.7.8 : www/py-notebook@py39
  4. py39-scipy>=1.2.3 : science/py-scipy@py39
  5. py39-sym>=0.3.4 : math/py-sym@py39
  6. py39-sympy>=1.5.1 : math/py-sympy@py39
  7. py39-appdirs>0 : devel/py-appdirs@py39
  8. py39-pycodeexport>=0.1.2 : devel/py-pycodeexport@py39
  9. py39-pycompilation>=0.4.9 : devel/py-pycompilation@py39
  10. py39-pygslodeiv2>=0.9.1 : math/py-pygslodeiv2@py39
  11. py39-pyodeint>=0.10.1 : math/py-pyodeint@py39
  12. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  13. python3.9 : lang/python39
This port is required by:
for Build
  1. science/py-chempy
for Run
  1. science/py-chempy

Configuration Options:
===> The following configuration options are available for py39-pyodesys-0.14.3_1: EXTRAS=on: Install optional dependencies for additional functionality ===> Use 'make config' to modify these settings
Options name:
math_py-pyodesys
USES:
display:test localbase:ldflags python shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/p/pyodesys/
  2. https://pypi.org/packages/source/p/pyodesys/
Collapse this list.

Number of commits found: 31

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.14.3_1
20 May 2024 10:33:03
commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377commit hash: b66e4949cb23218adc602edc35db187f966c5377 files touched by this commit
Vsevolod Stakhov (vsevolod) search for other commits by this committer
security/libsodium: update to 1.0.19, bump dependent ports

PR:	278259
Reported by:	Andrey Korobkov <alster-vinterdalen.se>
0.14.3
25 Apr 2024 14:52:10
commit hash: 1a7fb5ed90207765af5db686897309eb0fb835fdcommit hash: 1a7fb5ed90207765af5db686897309eb0fb835fdcommit hash: 1a7fb5ed90207765af5db686897309eb0fb835fdcommit hash: 1a7fb5ed90207765af5db686897309eb0fb835fd files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-pyodesys: update 0.14.2 → 0.14.3

Reported by:	portscout
0.14.2
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
0.14.2
19 Jun 2023 19:01:08
commit hash: ca39149eb8a6fb02a541b48e7c0a5bee08efe0d7commit hash: ca39149eb8a6fb02a541b48e7c0a5bee08efe0d7commit hash: ca39149eb8a6fb02a541b48e7c0a5bee08efe0d7commit hash: ca39149eb8a6fb02a541b48e7c0a5bee08efe0d7 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-pyodesys: Update 0.14.1 → 0.14.2

Reported by:	portscout
0.14.1_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.14.1
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
0.14.1
23 Oct 2022 07:52:31
commit hash: fea5153b6c657d1e01ba17241c20f65a1aa64c9fcommit hash: fea5153b6c657d1e01ba17241c20f65a1aa64c9fcommit hash: fea5153b6c657d1e01ba17241c20f65a1aa64c9fcommit hash: fea5153b6c657d1e01ba17241c20f65a1aa64c9f files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-pyodesys: Minor correction and comment addition
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.14.1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.14.1
27 Apr 2022 11:42:12
commit hash: c45ba2de94ea5e5f4b00a98b76c75c35b8d8eacbcommit hash: c45ba2de94ea5e5f4b00a98b76c75c35b8d8eacbcommit hash: c45ba2de94ea5e5f4b00a98b76c75c35b8d8eacbcommit hash: c45ba2de94ea5e5f4b00a98b76c75c35b8d8eacb files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
math/py-pyodesys: switch to USES=pytest, fix tests

Reported by:	reprise
Approved by:	portmgr blanket
0.14.1
21 Sep 2021 16:41:49
commit hash: 31ed0234b5da5848a11cbf3a932be1f4902cee6bcommit hash: 31ed0234b5da5848a11cbf3a932be1f4902cee6bcommit hash: 31ed0234b5da5848a11cbf3a932be1f4902cee6bcommit hash: 31ed0234b5da5848a11cbf3a932be1f4902cee6b files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-pyodesys: Update 0.14.0 -> 0.14.1

Reported by:	portscout
0.14.0
25 May 2021 17:26:23
commit hash: fdee9448843534f5351dafdce6f9db6da3b9bcebcommit hash: fdee9448843534f5351dafdce6f9db6da3b9bcebcommit hash: fdee9448843534f5351dafdce6f9db6da3b9bcebcommit hash: fdee9448843534f5351dafdce6f9db6da3b9bceb files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-pyodesys: Update 0.13.1 -> 0.14.0
0.13.1
10 May 2021 20:13:20
commit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5eb files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
0.13.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
0.13.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.13.1
26 Jul 2020 07:16:28
Revision:543439Original commit files touched by this commit
antoine search for other commits by this committer
sympy-1.6 is no longer compatible with python 2.7

Reported by:	pkg-fallout
0.13.1
30 May 2020 07:14:18
Revision:537054Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.13.0 -> 0.13.1

Reported by:	portscout
0.13.0
07 Mar 2020 20:39:40
Revision:527981Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.12.4 -> 0.13.0

Reported by:	portscout
0.12.4_2
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
0.12.4_1
12 Dec 2018 01:35:36
Revision:487272Original commit files touched by this commit
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
0.12.4
18 Oct 2018 21:34:13
Revision:482380Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.12.3 -> 0.12.4

Reported by:	portscout
0.12.3_1
21 Sep 2018 16:43:55
Revision:480285Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Add tests; Add EXTRAS option for extra-dependencies
0.12.3
17 Sep 2018 20:27:24
Revision:479954Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.16 -> 0.12.3
0.11.16
09 Aug 2018 00:31:44
Revision:476715Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.15 -> 0.11.16

Reported by:	portscout
0.11.15
27 Jul 2018 22:06:05
Revision:475470Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.14 -> 0.11.15

Approved by:	portscout
0.11.14
20 Jun 2018 17:05:44
Revision:472884Original commit files touched by this commit
mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
0.11.14
06 May 2018 06:33:53
Revision:469178Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.11 -> 0.11.14

Reported by:	portscout
0.11.11
03 May 2018 16:48:36
Revision:468940Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.10 -> 0.11.11

Reported by:	portscout
0.11.10
08 Apr 2018 05:35:11
Revision:466769Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Unbreak, py-scipy-0.19.1 isn't committed yet
0.11.10
05 Apr 2018 05:53:35
Revision:466537Original commit files touched by this commit
yuri search for other commits by this committer
math/py-pyodesys: Update 0.11.9 -> 0.11.10

Reported by:	portscout
0.11.9
01 Apr 2018 06:24:52
Revision:466121Original commit files touched by this commit
yuri search for other commits by this committer
New port: math/py-pyodesys: Straightforward numerical integration of ODE systems
from Python

Number of commits found: 31