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Port details
py-openTSNE Fast, parallel implementations of t-SNE
1.0.1 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-03-13 23:37:49
Last Update: 2024-01-08 09:04:24
Commit Hash: 4032a82
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://github.com/pavlin-policar/openTSNE
Description:
openTSNE is a modular Python implementation of t-Distributed Stochasitc Neighbor Embedding (t-SNE), a popular dimensionality-reduction algorithm for visualizing high-dimensional data sets. openTSNE incorporates the latest improvements to the t-SNE algorithm, including the ability to add new data points to existing embeddings, massive speed improvements, enabling t-SNE to scale to millions of data points and various tricks to improve global alignment of the resulting visualizations.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}openTSNE>0:math/py-openTSNE@${PY_FLAVOR}
To install the port:
cd /usr/ports/math/py-openTSNE/ && make install clean
To add the package, run one of these commands:
  • pkg install math/py-openTSNE
  • pkg install py39-openTSNE
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-openTSNE listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-openTSNE
Package flavors (<flavor>: <package>)
  • py39: py39-openTSNE
distinfo:
TIMESTAMP = 1704700371 SHA256 (openTSNE-1.0.1.tar.gz) = 51f4dffaa3366ee4a480dd21d5f64eb0fa677248a0c99490aeb8bf311124368c SIZE (openTSNE-1.0.1.tar.gz) = 251095

Packages (timestamps in pop-ups are UTC):
py39-openTSNE
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------1.0.0-
FreeBSD:14:latest1.0.11.0.1-1.0.11.0.1---
FreeBSD:14:quarterly1.0.11.0.1-1.0.11.0.1-1.0.0-
FreeBSD:15:latest1.0.11.0.1n/a-n/a-1.0.11.0.1
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>0 : devel/py-setuptools@py39
  2. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  3. py39-wheel>0 : devel/py-wheel@py39
  4. cython-3.9 : lang/cython@py39
  5. python3.9 : lang/python39
  6. py39-build>=0 : devel/py-build@py39
  7. py39-installer>=0 : devel/py-installer@py39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-scipy>0 : science/py-scipy@py39
  3. py39-scikit-learn>=0.20 : science/py-scikit-learn@py39
  4. python3.9 : lang/python39
Library dependencies:
  1. libfftw3.so : math/fftw3
This port is required by:
for Run
  1. misc/orange3

Configuration Options:
No options to configure
Options name:
math_py-openTSNE
USES:
compiler:c++14-lang localbase:ldflags python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/o/openTSNE/
  2. https://pypi.org/packages/source/o/openTSNE/
Collapse this list.
Port Moves
  • port moved here from biology/py-fastTSNE on 2021-03-13
    REASON: project renamed/reimplemented under a different name

Number of commits found: 18

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.0.1
08 Jan 2024 09:04:24
commit hash: 4032a821c6a32137e264f80178a0f0aa352d1d3ecommit hash: 4032a821c6a32137e264f80178a0f0aa352d1d3ecommit hash: 4032a821c6a32137e264f80178a0f0aa352d1d3ecommit hash: 4032a821c6a32137e264f80178a0f0aa352d1d3e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: update 1.0.0 → 1.0.1

Reported by:	portscout
1.0.0
18 Jul 2023 00:53:09
commit hash: 9a80a6ee5e8ebf5c279b3d7a9e7e8b7dbabbaf0acommit hash: 9a80a6ee5e8ebf5c279b3d7a9e7e8b7dbabbaf0acommit hash: 9a80a6ee5e8ebf5c279b3d7a9e7e8b7dbabbaf0acommit hash: 9a80a6ee5e8ebf5c279b3d7a9e7e8b7dbabbaf0a files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS}

Currently a no-op, but in the future outputs the correct setuptools
port depending on whether USES_PYTHON=distutils is specified.

With hat: python
PR: 270510, 270358
1.0.0
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.0.0
13 Jun 2023 06:53:12
commit hash: b0c246ef56d777af796e4d31649492d1d50cd866commit hash: b0c246ef56d777af796e4d31649492d1d50cd866commit hash: b0c246ef56d777af796e4d31649492d1d50cd866commit hash: b0c246ef56d777af796e4d31649492d1d50cd866 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.7.1 → 1.0.0

Reported by:	portscout
0.7.1_2
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.7.1_1
04 Apr 2023 18:29:11
commit hash: 1730e97e049085a8fe5536788d214cbfc4eb3123commit hash: 1730e97e049085a8fe5536788d214cbfc4eb3123commit hash: 1730e97e049085a8fe5536788d214cbfc4eb3123commit hash: 1730e97e049085a8fe5536788d214cbfc4eb3123 files touched by this commit
Antoine Brodin (antoine) search for other commits by this committer
USE_PYTHON=pep517: bump PORTREVISION
0.7.1
22 Feb 2023 15:52:37
commit hash: 20e55e0cf2b75fa0988ae31c9814d1b8844a5428commit hash: 20e55e0cf2b75fa0988ae31c9814d1b8844a5428commit hash: 20e55e0cf2b75fa0988ae31c9814d1b8844a5428commit hash: 20e55e0cf2b75fa0988ae31c9814d1b8844a5428 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.6.2 → 0.7.1

Reported by:	portscout
0.6.2
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.6.2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.6.2
23 Apr 2022 03:52:25
commit hash: 6e25d8d4edbbaf825f74f8f2a18609430c5d54edcommit hash: 6e25d8d4edbbaf825f74f8f2a18609430c5d54edcommit hash: 6e25d8d4edbbaf825f74f8f2a18609430c5d54edcommit hash: 6e25d8d4edbbaf825f74f8f2a18609430c5d54ed files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.6.1 -> 0.6.2

Reported by:	portscout
0.6.1
23 Dec 2021 02:56:22
commit hash: 3a396ab0655ec77486ce8d366858da662ac7a3b6commit hash: 3a396ab0655ec77486ce8d366858da662ac7a3b6commit hash: 3a396ab0655ec77486ce8d366858da662ac7a3b6commit hash: 3a396ab0655ec77486ce8d366858da662ac7a3b6 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.6.0 -> 0.6.1
0.6.0
26 Apr 2021 07:07:37
commit hash: 6ed2bd5f9d6f97eeb8ec8e47e74b2e73d1494957commit hash: 6ed2bd5f9d6f97eeb8ec8e47e74b2e73d1494957commit hash: 6ed2bd5f9d6f97eeb8ec8e47e74b2e73d1494957commit hash: 6ed2bd5f9d6f97eeb8ec8e47e74b2e73d1494957 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.5.2 -> 0.6.0
0.5.2
13 Apr 2021 00:01:54
commit hash: 5d009904e043d4db2520f3fd8a6bbb3296ff3044commit hash: 5d009904e043d4db2520f3fd8a6bbb3296ff3044commit hash: 5d009904e043d4db2520f3fd8a6bbb3296ff3044commit hash: 5d009904e043d4db2520f3fd8a6bbb3296ff3044 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
math/py-openTSNE: Update 0.5.1 -> 0.5.2

Reported by:	portscout
0.5.1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
0.5.1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
0.5.1
29 Mar 2021 14:47:16
Revision:569473Original commit files touched by this commit
linimon search for other commits by this committer
Add compiler:c++14-lang to USES to fix build on GCC-based systems:

  cc1plus: error: unrecognized command line option "-std=c++14"

Approved by:	portmgr (tier-2 blanket)
0.5.1
13 Mar 2021 23:37:12
Revision:568296Original commit files touched by this commit
yuri search for other commits by this committer
Move: biology/py-fastTSNE -> math/py-openTSNE

Project was renamed and reimplemented.

Number of commits found: 18