Port details on branch 2022Q2 |
- hipmcl High-performance parallel algorithm for large-scale network clustering
- g20180814_4 math
=0 g20180814_4Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2018-12-16 11:31:48
- Last Update: 2022-07-16 17:02:30
- Commit Hash: f2c8062
- License: BSD3CLAUSE
- WWW:
- https://bitbucket.org/azadcse/hipmcl/wiki/Home
- Description:
- HipMCL is a high-performance parallel algorithm for large-scale network
clustering. HipMCL parallelizes popular Markov Cluster (MCL) algorithm that has
been shown to be one of the most successful and widely used algorithms for
network clustering. It is based on random walks and was initially designed to
detect families in protein-protein interaction networks. Despite MCL's
efficiency and multi-threading support, scalability remains a bottleneck as it
fails to process networks of several hundred million nodes and billion edges in
an affordable running time. HipMCL overcomes all of these challenges by
developing massively-parallel algorithms for all components of MCL. HipMCL can
be 1000 times faster than the original MCL without any information loss. It can
easily cluster a network of ~75 million nodes with ~68 billion edges in ~2.4
hours using ~2000 nodes of Cori supercomputer at NERSC. HipMCL is developed in
C++ language and uses standard OpenMP and MPI libraries for shared- and
distributed-memory parallelization.
WWW: https://bitbucket.org/azadcse/hipmcl/wiki/Home
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- No installation instructions:
- This port has been deleted.
- PKGNAME: HipMCL
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1544950762
SHA256 (HipMCL-g20180814.tar.gz) = 324fbe12f3547cd1e3da38d01ea2d6882061821a7cf6a7904e1402759c01e94c
SIZE (HipMCL-g20180814.tar.gz) = 43337935
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake
- ninja : devel/ninja
- Runtime dependencies:
-
- libgcc_s.so.1 : lang/gcc10
- Library dependencies:
-
- libCombBLAS.so : math/combblas
- libmpi.so : net/mpich
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- math_hipmcl
- USES:
- cmake compiler:c++14-lang dos2unix localbase:ldflags
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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