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Port details on branch 2022Q2
hipmcl High-performance parallel algorithm for large-scale network clustering
g20180814_4 math Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout g20180814_4Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-16 11:31:48
Last Update: 2022-07-16 17:02:30
Commit Hash: f2c8062
License: BSD3CLAUSE
WWW:
https://bitbucket.org/azadcse/hipmcl/wiki/Home
Description:
HipMCL is a high-performance parallel algorithm for large-scale network clustering. HipMCL parallelizes popular Markov Cluster (MCL) algorithm that has been shown to be one of the most successful and widely used algorithms for network clustering. It is based on random walks and was initially designed to detect families in protein-protein interaction networks. Despite MCL's efficiency and multi-threading support, scalability remains a bottleneck as it fails to process networks of several hundred million nodes and billion edges in an affordable running time. HipMCL overcomes all of these challenges by developing massively-parallel algorithms for all components of MCL. HipMCL can be 1000 times faster than the original MCL without any information loss. It can easily cluster a network of ~75 million nodes with ~68 billion edges in ~2.4 hours using ~2000 nodes of Cori supercomputer at NERSC. HipMCL is developed in C++ language and uses standard OpenMP and MPI libraries for shared- and distributed-memory parallelization. WWW: https://bitbucket.org/azadcse/hipmcl/wiki/Home
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/hipmcl
  2. /usr/local/share/licenses/HipMCL-g20180814_4/catalog.mk
  3. /usr/local/share/licenses/HipMCL-g20180814_4/LICENSE
  4. /usr/local/share/licenses/HipMCL-g20180814_4/BSD3CLAUSE
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Dependency lines:
  • HipMCL>0:math/hipmcl
No installation instructions:
This port has been deleted.
PKGNAME: HipMCL
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1544950762 SHA256 (HipMCL-g20180814.tar.gz) = 324fbe12f3547cd1e3da38d01ea2d6882061821a7cf6a7904e1402759c01e94c SIZE (HipMCL-g20180814.tar.gz) = 43337935

No package information for this port in our database
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Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
Runtime dependencies:
  1. libgcc_s.so.1 : lang/gcc10
Library dependencies:
  1. libCombBLAS.so : math/combblas
  2. libmpi.so : net/mpich
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
math_hipmcl
USES:
cmake compiler:c++14-lang dos2unix localbase:ldflags
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://bitbucket.org/azadcse/hipmcl/get/e20476acc473.tar.gz?dummy=/
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There are no commits on branch 2022Q2 for this port