math/R: Update to 4.20

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000683.html

Sponsored by:	The FreeBSD Foundation

devel/icu: update to 71.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-71-1
Reported by:	GitHub (watch releases)
PR:		262654
Exp-run by:	antoine
Approved by:	fluffy

math/R: Update to 4.1.3

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000680.html

Sponsored by:	The FreeBSD Foundation

math/R: Add cmake dependency

Some R packages such as nloptr require CMake to build.

PR:		261835

Approved by:	jrm (maintainer)

math/R: Specify tk_config location during configure

PR:		261779

math/R: Update to 4.1.2

https://stat.ethz.ch/pipermail/r-announce/2021/000677.html

devel/icu: update to 70.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-70-1
Reported by:	GitHub (watch releases)
PR:		258794
Exp-run by:	antoine

math/R: Fix fetching of mgcv after distfile location changed

PR:		259108
Reported by:	thierry

math/R: Fix build with clang/openmp 13

The mgcv package is one of the recommended packages to be installed with
R.  A problem with mgcv and clang/openmp 13 is that mgcv versions prior
to 1.8-37 place 'include <omp.h>' after 'include <R.h>'.  This causes a
conflict between '#define match' and an openmp pragma line, which uses
match().  This problem was fixed in mgcv 1.8-37, so replace mgcv 1.8-36
with this newer version.

While here, incorporate formatting changes suggested by portclippy and
portfmt.

PR:		258887
Approved by:	dim
Differential Revision:	https://reviews.freebsd.org/D32280

math/R: Add CPE information

Approved by:    portmgr (blanket)

math/R: Bump PORTREVISION after ca96cfceb

math/R;math/libRmath: Update maintainers

I intended to drop maintainership of math/libRmath as I no longer use
it (and suspect there are few users), but accidentally dropped
maintainership of math/R.

math/R: Add missing harfbuzz dependency when CAIROPANGO is on

PR:		257795

math/R: Release maintainership

math/R: Update to 4.1.1

https://stat.ethz.ch/pipermail/r-announce/2021/000672.html

math/R: Add comment; minor formatting change from portfmt

math/R: enable on powerpc

math/R: Update to 4.1.0

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

*: Remove unnecessary 'port' argument from USES=readline

PR:		248459
Exp-run by:	antoine

devel/icu: update to 69.1

Changes:	https://github.com/unicode-org/icu/releases/tag/release-69-1
Reported by:	GitHub (watch releases)

math/R: Incorporate formatting suggestions from portclippy/portfmt

math/R: Update to bug-fix release, 4.0.5

https://stat.ethz.ch/pipermail/r-announce/2020
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

Remove # $FreeBSD$ from Makefiles.

math/R: enable OPENMP on powerpc64 and powerpc64le

math/R: remove obsolete fpsetmask

src/unix/sys-unix.c uses fpsetmask to workaround a bug that is not present since
FreeBSD 4.0.

This issue also affected Firefox and was resolved 9 years ago
https://bugzilla.mozilla.org/show_bug.cgi?id=789436#c27

fpsetmask executions cause R build to crash on powerpc64(le), since new SIGFPE
kernel code doesn't take into account old workarounds.

PR:		254621
Approved by:	jrm (maintainer)

Remove redundant option descriptions that match the default ones

(ignoring case)

Reported by:	danfe (for net/mosquitto), portscan

math/R: Update to version 4.0.4

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

devel/icu: update to 68.1

Changes:	http://site.icu-project.org/download/68
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
Reported by:	GitHub (watch releases)

math/R: Update to version 4.0.3

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000662.html

Allow building on powerpc64le.

Approved by:	portmgr (tier-2 blanket)

math/R: Update to version 4.0.2

Upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

math/R: Update to version 4.0.1

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000655.html

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

devel/icu: update to 67.1

Changes:	http://site.icu-project.org/download/67
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
Reported by:	GitHub (watch releases)

devel/icu: update to 66.1

Changes:	http://site.icu-project.org/download/66
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/

math/R: Update to version 3.6.3

See the NEWS file for upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

Add and use a shared INFO description. I have patches to add that knob to
a bunch of additional ports.

math/R: Update to version 3.6.2

See the NEWS file for upstream changes:
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

math/R: No-op to standardize formatting using ports-mgmt/portfmt

devel/icu: update to 65.1

Changes:	http://site.icu-project.org/download/65
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

math/R: Fix dependency condition for devel/openmp

libomp is provided by
  - LLVM, which gets pulled in with FLANG
  - gcc

So, we *must* only depend on devel/openmp when
  - the OPENMP knob is on
  - FLANG is off (guaranteed to be off for all archs except amd64)
  - clang is the C compiler.

But, we cannot modify LIB_DEPENDS after CHOSEN_COMPILER_TYPE is defined, so
for now, limit the OPENMP knob for i386 and amd64 where clang is the
default compiler.

This will be moot after 12.1 when openmp will be in base.

PR:		240279
Reported by:	pkubaj
Reviewed by:	pkubaj

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

math/R: Update to version 3.6.1

Upstream changes: See 'CHANGES IN R 3.6.1' and 'CHANGES IN R 3.6.1 patched'
at https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

math/R: force new compiler on GCC architectures

This is to fix build of textproc/R-cran-stringi.

Approved by:	mentors (implicite approval)

math/R: add powerpc64

Compiles fine on powerpc64.

Approved by:	mentors (implicite approval)

devel/openmp: phase out

- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767

cran.mk: Don't include math/R/compiler.mk; it was removed in r500605

Pointy-hat:	jrm

math/R: Upgrade to version 3.6.0

Upstream changes: See 'CHANGES IN R 3.6.0' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Update devel/readline to 8.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine

devel/icu: update to 64.1

Changes:	http://site.icu-project.org/download/64
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		236325
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19479

math/R: Update to version 3.5.3

'CHANGES IN R 3.5.3' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

- writeLines(readLines(fnam), fnam) now works as expected, thanks to Peter
  Meissner's PR#17528
- setClassUnion() no longer warns, but uses message() for now, when
  encountering "non local" subclasses of class members
- stopifnot(exprs = T) no longer fails

math/R: Update to version 3.5.2

This is mostly a bug-fix release.  For details see 'CHANGES IN R 3.5.2' in
the release notes.
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Install texinfo files (GNU info) into ${PREFIX}/share/info

After a discussion on the mailing list on moving manpages to
${PREFIX}/share/man for consistency with base where it is
installed in usr/share/man, it appeared the same should happen
to GNU info files which were installed under share in base and
not in ports.

Now texinfo is not in base on any of the supported version of FreeBSD
it is possible to proceed to this move and it is easier to do than
the manpage change.

Other benefit than consistency are less patching: all build tools but
cmake are expecting info files to be under share/info and cmake (patched here)
was having an exception for BSD so the patch makes FreeBSD case less
specific for them

Bump revision of all impacted ports

PR:		232907
exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17816

Remove compatibility code for FreeBSD < 11.2 from all ports.

Simplify some ports where DragonFlyBSD no longer needs to be special-cased.
Submitted by:	rene
Reviewed by:	bapt, jbeich
Differential Revision:	https://reviews.freebsd.org/D17724

devel/icu: update to 63.1

Changes:	http://site.icu-project.org/download/63
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		232300
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

math/R: Update to version 3.5.1

devel/icu: update to 62.1

Changes:	http://site.icu-project.org/download/62
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		229359
Exp-run by:	antoine (only 10.4)

math/R: Permit building in poudriere with ATLAS

When ATLAS is built locally and then injected into poudriere (or other
similar shenanigans) it does not make sense to block building of R.

Approved by:	jrm (maintainer)

math/R: Update to version 3.5.0

Upstream changes: https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

devel/icu: update to 61.1

Changes:	http://site.icu-project.org/download/61
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		227042
Exp-run by:	antoine
MFH:		2018Q2 (required by Firefox 61)

math/R: Update to bug-fix release 3.4.4

Upstream changes:
https://cloud.r-project.org/doc/manuals/r-release/NEWS.html

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

math/R: Turn on the TCLTK option by default

The TCLTK option was turned off in r455296, however this breaks
devel/R-cran-gsubfn.

PR:		224472
Submitted by:	w.schwarzenfeld@utanet.at

math/R: Rename files/extra-patch-src_main_Makefile.in to
files/patch-src_main_Makefile.in, so that the SONAME for libR is included.
This was intended for r455296.

math/R: Update to version 3.4.3

Other port changes:
- Add armv6 and armv7 to ONLY_FOR_ARCHS; armv6 and armv7 were tested by mmel@
  and working on 11.
- Remove LIBR option and always build the shared library.  This was requested by
  yuri@ and a RFC was posted on ports@ with no response.
- Exclude OPENMP option for everything except amd64 and i386.
- Turn on OPENMP option by default to match upstream.
- Turn off TCLTK option by default.
- LLVM, which gets pulled in with FLANG, provides libomp, so only depend on
  devel/openmp, when GFORTRAN and OPENMP are on.

Remove pkg-message about problems with gfortran.  The problem has been
addressed in r454161.

PR:		221127

- Allow users to change the default Fortran compiler via DEFAULT_VERSIONS.
- Rename USES=fortran:gcc to the more appropriate USES=fortran:gfortran.
- Change the options in math/R and math/libRmath so the choice becomes
  flang or default instead of flang or gfortran.  Use default Fortran
  compiler again on amd64.

devel/icu: update to 60.1

Changes:	http://site.icu-project.org/download/60
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		223373
Exp-run by:	antoine

math/R: Use the new flang argument to USES=fortran and patch libR.pc to link the
appropriate BLAS library.

PR:		220418
Submitted by:	yuri@rawbw.com

math/R: Update to version 3.4.2

Also
 - Build Fortran code with flang by default on amd64.
 - Remove LTO option.  Upstream does not turn it on by default, it has
   caused problems with each GCC upgrade, and any benefit is unclear.
 - Do not specify USES=compiler:openmp since that just forces GCC.

devel/icu: update to 59.1

- Temporarily keep C++98 working in consumers for Clang's default -std=

Changes:	http://site.icu-project.org/download/59
PR:		218788
Submitted by:	takefu@airport.fm, dcarmich@dcarmichael.net (early version)
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

math/R: Do not specify minimum tk version

Specifying TCLTK_USES=tk:84+ was pulling in version 8.4 for package builds on
cluster, however the Tcl/Tk 8.4 ports are being deprecated.  Simply using
TCLTK_USES=tk pulls in the default version. [1]

While here, silence a portlint warning about the location of ONLY_FOR_ARCHS and
use DISTVESION instead of PORTVERSION.

Reported by:	gahr [1]

Remove USES=objc:compiler, R doesn't use any objective c code and this breaks
R-Cran-* on FreeBSD 10

Reported by:	pkg-fallout
With hat:	portmgr

math/R: Work around bug 221127.

PR:		221127
Reported by:	rs.os@t-online.de

math/R: Fix build issues when LIBR option is off and fix runtime issue by
permitting FLANG only with RBLAS

- Only apply SONAME patches when the relevant options are chosen. This
  prevents install errors when LIBR is off.
- Only permit the FLANG option when RBLAS is chosen, because FLANG causes
  some configure-time checks to fail and the shared RBLAS library is fallen
  back upon, but not properly packaged, which causes runtime issues.
- Bump PORTREVISION

Reported by:	rhurlin@gwdg.de
Differential Revision:	https://reviews.freebsd.org/D11726

math/R: set SONAME for libraries under lib/R/lib

PR:		219776
Submitted by:	pawel
Reviewed by:	pawel, mat
Differential Revision:	https://reviews.freebsd.org/D11615

math/R: Fix typos in option descriptions

PR:		220480
Submitted by:	Trond.Endrestol@ximalas.info

Setting OPTIONS_SINGLE_FORTRAN_armv6 was incorrect.  It should be
OPTIONS_SINGLE_FORTRAN_aarch64.

Submitted by:	jbeich

math/R: Update to version 3.4.1

Upstream changes:
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

Port changes:
- Add aarch64 to ONLY_FOR_ARCHS [1]
- Add off-by-default option for experimental fortran support via flang [2]

Submitted by:	[1] andrew, [2] yuri@rawbw.com

math/R: Build with gmake and add devel/gmake to RUN_DEPENDS because some
internal packages use GNU make.  While here, sort ONLY_FOR_ARCHS value to
silence portlint warning.

PR:		220341
Reported by:	yuri@rawbw.com

Update devel/readline to 7.0 patch 3

- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine

math/R: Update to version 3.4.0

The configure script now detects the correct zlib version, so setting the
r_cv_header_zlib_h is no longer necessary.

Approved by:	swills (mentor, implicit)

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

math/R: Update to version 3.3.3.

Upstream changes: https://cran.r-project.org/doc/manuals/r-release/NEWS.html

Approved by:	swill (mentor, implicit)

- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL

Approved by:	portmgr blanket

Fix configure with zlib 1.2.10, configure script believes that version
1.2.10 is lower than 1.2.5

Reported by:	pkg-fallout
MFH:		2017Q1

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Fix build issue when the LTO option is enabled, do not register
${PREFIX}/lib/R/lib with ldconfig, and fix typo.

GCC 4.9 now generates slim object files which only contain intermediate
language representation for LTO. This means, either -ffat-lto-objects must
be used to create files which also contain object code or gcc-ar/gcc-ranlib
must be used to create static libraries suitable for LTO processing. This
patch sets AR/RANLIB to gcc-ar/gcc-ranlib.

The libraries under ${PREFIX}/lib/R/lib are not intended (by upstream) to
be registered with ldconfig, but are opened by dlopen(3). This means pkg
will not register shared library dependencies, so we will have to adjust
and bump ports as necessary. When necessary, unfortunately, is unclear
based on how things work upstream.

Fix typo: OPENMP_USE=compiler:openmp should have been
OPENMP_USES=compiler:openmp.

Bump PORTREVISION.

PR:	214785
        214666
Reported by:	taozhenext@gmail.com (214785), dbn (214666)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8650

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

devel/icu: update to 58.1

Changes:	http://site.icu-project.org/download/58
PR:		214384
Exp-run by:	antoine
Approved by:	office (bapt)

math/R: More docuementation changes.

The feedback has been clear. Installing the TeX-dependent documentation
files by default is bad for users, even if that means one documentation
knob does not control the installation of all documentation files.

Reported by:	mat marino
Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8440

math/R: Revert documentation changes and bump PORTREVISION

In an attempt to simplify the handling of documentation for users, changes
were made in the last commit. When the documentation knob was off, (almost)
no HTML, PDF, etc. files or their sources were installed, and when the knob
was on, all these files were installed. Because some of these documentation
files depended on some very large TeX ports, despite the usual convention,
the knob was turned off by default. Unfortunately, this caused problems for
a few R-dependent ports, because they copy documentation files from math/R
when they are installed.

Reported by:	antoine
Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8429

math/R: Fix typo and bump PORTREVISION

Reported by:	rhurlin@gwdg.de
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8420