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non port: math/R-cran-car/Makefile
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Number of commits found: 80

Sun, 4 Jun 2023
[ 13:23 Muhammad Moinur Rahman (bofh) search for other commits by this committer ]    commit hash:6732104c5ea6b5c8d2506f52ffdc94a1fbe9c52b  commit hash:6732104c5ea6b5c8d2506f52ffdc94a1fbe9c52b  commit hash:6732104c5ea6b5c8d2506f52ffdc94a1fbe9c52b  6732104 
math/R-cran-car: Fix build

Approved by:	portmgr (just-fix-it)
Tue, 25 Apr 2023
[ 08:43 Wen Heping (wen) search for other commits by this committer ]    commit hash:8f742d73261008995921c81e21157d67f30b5f11  commit hash:8f742d73261008995921c81e21157d67f30b5f11  commit hash:8f742d73261008995921c81e21157d67f30b5f11  8f742d7 
math/R-cran-car: Update to 3.1.2
Sun, 23 Apr 2023
[ 09:09 Gerald Pfeifer (gerald) search for other commits by this committer ]    commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  8d3e020  (Only the first 10 of 2091 ports in this commit are shown above. View all ports for this commit)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
Thu, 3 Nov 2022
[ 00:19 Wen Heping (wen) search for other commits by this committer ]    commit hash:e01b30d009d1854e90ae1f44143d7e929b0f2598  commit hash:e01b30d009d1854e90ae1f44143d7e929b0f2598  commit hash:e01b30d009d1854e90ae1f44143d7e929b0f2598  e01b30d 
math/R-cran-car: Update to 3.1.1
Wed, 7 Sep 2022
[ 21:10 Stefan Eßer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 20 Jul 2022
[ 14:22 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:f53eb28489aa8f30712cd8772d1a0e05c394a5da  commit hash:f53eb28489aa8f30712cd8772d1a0e05c394a5da  commit hash:f53eb28489aa8f30712cd8772d1a0e05c394a5da  f53eb28  (Only the first 10 of 719 ports in this commit are shown above. View all ports for this commit)
math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 22 Jun 2022
[ 08:38 Wen Heping (wen) search for other commits by this committer ]    commit hash:606431835053afd81ebf0494f70017f5e01b0d4a  commit hash:606431835053afd81ebf0494f70017f5e01b0d4a  commit hash:606431835053afd81ebf0494f70017f5e01b0d4a  6064318 
math/R-cran-car: Update to 3.1.0
Sat, 7 May 2022
[ 07:00 Wen Heping (wen) search for other commits by this committer ]    commit hash:dabad2b397e714040037681612c667a705c3741b  commit hash:dabad2b397e714040037681612c667a705c3741b  commit hash:dabad2b397e714040037681612c667a705c3741b  dabad2b 
math/R-cran-car: Update to 3.0.13
Mon, 13 Dec 2021
[ 02:45 Wen Heping (wen) search for other commits by this committer ]    commit hash:d77268753090d86cdec7b9fe108debcd9cc2b2e7  commit hash:d77268753090d86cdec7b9fe108debcd9cc2b2e7  commit hash:d77268753090d86cdec7b9fe108debcd9cc2b2e7  d772687 
math/R-cran-car: Update to 3.0.12
Mon, 12 Jul 2021
[ 11:06 Wen Heping (wen) search for other commits by this committer ]    commit hash:d115f9ab3e6030f8563a69309b7c22e4ba6bc49b  commit hash:d115f9ab3e6030f8563a69309b7c22e4ba6bc49b  commit hash:d115f9ab3e6030f8563a69309b7c22e4ba6bc49b  d115f9a 
math/R-cran-car: Update to 3.0.11
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Wed, 7 Oct 2020
[ 10:33 wen search for other commits by this committer ] Original commit   Revision:551626
- Update to 3.0.10
Sat, 26 Sep 2020
[ 09:33 wen search for other commits by this committer ] Original commit   Revision:550143
- Update to 3.0.9
Tue, 9 Jun 2020
[ 06:24 wen search for other commits by this committer ] Original commit   Revision:538287
- Update to 3.0.8
Tue, 5 May 2020
[ 16:07 jrm search for other commits by this committer ] Original commit   Revision:534095 (Only the first 10 of 320 ports in this commit are shown above. View all ports for this commit)
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
Fri, 20 Mar 2020
[ 08:59 wen search for other commits by this committer ] Original commit   Revision:528766
- Update to 3.0.7
Sat, 22 Feb 2020
[ 10:50 wen search for other commits by this committer ] Original commit   Revision:526753
- Update to 3.0.6
- Take maintainership
Mon, 3 Feb 2020
[ 20:21 rene search for other commits by this committer ] Original commit   Revision:525092 (Only the first 10 of 37 ports in this commit are shown above. View all ports for this commit)
Return dbn's ports to the pool after safekeeping his commit bit.
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Wed, 12 Dec 2018
[ 01:35 gerald search for other commits by this committer ] Original commit   Revision:487272 (Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Wed, 24 Oct 2018
[ 16:31 dbn search for other commits by this committer ] Original commit   Revision:482910
math/R-cran-car: updated to version 3.0-2

 - removed PORTREVISION due to version bump
 - add new run dependencies:
   - astro/R-cran-maptools
   - devel/R-cran-abind
   - math/R-cran-carData
   - math/R-cran-lme4
   - textproc/R-cran-rio
 - remove unused test dependency:
   - math/R-cran-lme4
 - update description to align with CRAN package
 - update website URL to align with CRAN package
 - changelog:
   - This version deals with a technical problem (reported by Don van den
     Bergh), implementing a solution suggested by Brian Ripley: Rather than
     importing utils::askYesNo(), which is unavailable before R 3.5.0, a
     local unexported copy is supplied in the car package, to be removed
     after version 3.0-2.

Generated by:	portcran (0.1.9)
Sat, 10 Mar 2018
[ 17:46 gerald search for other commits by this committer ] Original commit   Revision:464084 (Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Mon, 18 Dec 2017
[ 07:32 dbn search for other commits by this committer ] Original commit   Revision:456600
math/R-cran-car: updated to version 2.1-6

 - remove unused test dependencies:
   - math/R-cran-nloptr
 - changelog:
   - Made several functions compatible with vcov() in R-devel (3.5.0).

Generated by:	portcran (0.1.6)
Sun, 9 Jul 2017
[ 10:07 dbn search for other commits by this committer ] Original commit   Revision:445398
math/R-cran-car: updated to version 2.1-5

 - no changelog provided

Generated by:	portcran (0.1.5)
Sun, 18 Jun 2017
[ 18:09 dbn search for other commits by this committer ] Original commit   Revision:443845 (Only the first 10 of 79 ports in this commit are shown above. View all ports for this commit)
qa: add check for NO_ARCH

If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
Tue, 20 Dec 2016
[ 09:56 dbn search for other commits by this committer ] Original commit   Revision:428984
math/R-cran-car: updated to version 2.1-4

 - updated comment to align with CRAN package
 - updated license to align with CRAN package
 - add new test dependencies:
   - math/R-cran-MatrixModels
   - math/R-cran-SparseM
   - math/R-cran-lme4
   - math/R-cran-nloptr
   - math/R-cran-survey
 - set NO_ARCH as port does not compile

Generated by:	portcran (0.1.3)
Sat, 19 Nov 2016
[ 12:57 dbn search for other commits by this committer ] Original commit   Revision:426364
Convert R-cran ports to auto-plist.

These ports did not properly handle the DOCS options (in math/R).
Mon, 15 Aug 2016
[ 16:31 dbn search for other commits by this committer ] Original commit   Revision:420249
math/R-cran-car: update to 2.1-3.

 - Corrected documentation for mcPlots
 - added id.location argument to showLabels to vary location of labels
 - added fix for compatiblity with Rcmdr with missing data in several plotting
   functions.
 - deltaMethod() now reports confidence intervals.
 - print.summary.Anova.mlm() has new SSP and SSPE arguments to determine
   whether the corresponding matrices are printed (suggestion of Michael
   Friendly).
 - summary() and print() methods for Anova.mlm() can now report univariate
   ANOVAs (suggestion and some code by Michael Friendly).
 - added "value" and "vcov" attributes to objects returned by
   linearHypothesis() (after suggestions by Liviu Andronic and Steven Yen).
 - compareCoefs() now checks classes of models.
 - small fixes/changes.
Fri, 1 Apr 2016
[ 14:16 mat search for other commits by this committer ] Original commit   Revision:412348 (Only the first 10 of 2612 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight
Mon, 28 Mar 2016
[ 06:45 dbn search for other commits by this committer ] Original commit   Revision:412034
math:R-cran-car: update to 2.1-2.

Changes:
 - Add lmtest and sandwich as test dependencies.

ChangeLog:
 - Modified scatter3d() so that plots can be embedded in HTML.
Sat, 13 Feb 2016
[ 14:13 dbn search for other commits by this committer ] Original commit   Revision:408798
math/R-cran-car: update to 2.1-1.

Changes:
 * Use explicit pkg-plist instead of autoplist.  Using an explicit pkg-plist
   is more robust against "silent" errors or changes.

ChangeLog:
 - influencePlot now returns Cook's distance, not its square root.
 - Anova() now supports "coxme" objects (produced by coxme() in coxme package)
   (request of Philipp Sprenger).
 - Anova() now works via its default method with "vglm" objects produced by
   functions in the VGAM package; and the default method of linearHypothesis()
   again works with these objects (problem reported by Michael Friendly).
 - Fixed Anova.coxph() so that it takes account of method (ties) argument (bug
   reported by Karl Ove Hufthammer).
 - Improvements to Anova.default() so that a wider variety of model classes are
   accommodated (following request of Liviu Andronic.)
 - dataEllipse() now throws an error if there are too few colors for the number
   of groups (fixing bug reported by Ottorino Pantani).
 - spreadLevelPlot.lm() now includes an optional smoother in addition to the
   fitted straight line (suggestion of Michael Friendly).
 - No longer import methods (as opposed to generics) directly from pbkrtest.
 - Added axis.ticks argument to scatter3d() (code contributed by
   David Winsemius).
Sat, 28 Nov 2015
[ 14:30 dbn search for other commits by this committer ] Original commit   Revision:402534
math/R-cran-car: update to 2.1-0

Changes:
 - Remove port's broken and depreciated status
 - Add two dependencies
 - Add GPLv3 as dual license
 - Update website URL

Change Log:
 - New power family called skewPower has been added that can be used with the
   Box Cox method with a few negative responses (joint work with Doug Hawkins).
   Several functions modified to accomodate two-parameter power families.
 - Fixed bug in Anova() for coxph models with clusters (reported by Jesus
   Humberto Gomez ), due apparently to a change in coxph().
 - Anova() F-tests for binomial and Poisson GLMs now changes
   error.estimate="dispersion" to "pearson" as advertized (bug reported by
   Will Petry).
 - Improved behavior of above-plot legends in scatterplot().
 - Fixed sp() (bug reported by Cesar Rabak).
 - Conforms to new CRAN requirements for package imports.

Reported by:	tota@
PR:		203418
PR:		204587
Thu, 29 Oct 2015
[ 17:24 tota search for other commits by this committer ] Original commit   Revision:400474
- Postpone EXPIRATION_DATE to fix math/R-cran-car and
  devel/R-cran-caret
Sat, 26 Sep 2015
[ 21:39 antoine search for other commits by this committer ] Original commit   Revision:398018 (Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
Deprecate ports broken for more than 6 months
Sat, 28 Mar 2015
[ 17:40 antoine search for other commits by this committer ] Original commit   Revision:382529
Mark BROKEN: missing dependency

===>  Staging for R-cran-car-2.0.25
===>   Generating temporary packing list
ERROR: dependencies 'pbkrtest', 'quantreg' are not available for package 'car'

Reported by:	pkg-fallout
Sun, 22 Mar 2015
[ 17:05 dbn search for other commits by this committer ] Original commit   Revision:381937
math/R-cran-car: update to 2.0-25.

Changes to Version 2.0-25
 * Fixed df check in linearHypothesis.default() (bug report by Pierre Chausse).
 * Fixed bug when vcov. argument to Anova() is a function (reported by Liviu
   Andronic).
 * Now export .carEnv to avoid problem with update() in Boot() (reported by
   Alan T. Arnholt).

Changes to Version 2.0-24
 * Fixed broken URLs.
 * Changed handling of .carEnv environment.
 * Moved pbkrtest, quantreg, and mgcv from Suggests: to Imports:.

Changes to Version 2.0-23
 * Modified ScatterplotSmoothers to add an 'offset' to the vertical axis of
   spread smooths.  This are required in the marginal model plot functions.
 * Fixed labels on mcPlot with overlay=FALSE
 * Check for 0 residual df and 0 residual deviance (within rounding) in Anova()
   and linearHypothesis() (problem reported by Jonathan Love).
 * Fixed model.matrix.lme and model.matrix.gls utility functions, and hence
   Anova and vif, respectively, to work with models specified with formulas
   supplied as objects (after problem noted by Gang Chen).
 * Added Wong data set, used in mixed-models appendix.
Fri, 5 Dec 2014
[ 12:26 dbn search for other commits by this committer ] Original commit   Revision:374009
Update math/R-cran-car to 2.0-22.

Changes to Version 2.0-22
 * corrected bug in 'terms' argument in residualPlots, and other graphic
   functions with a 'terms' argument
 * added residual curvature tests for glm.nb
 * mcPlot and mcPlot draw 'marginal/conditional' plots for lm objects.  The
   marginal plot is of the centered response versus a centered regressor; the
   conditional plot is the corresponding added-variable plot.  The plots can be
   overlaid or viewed side-by-side.
 * added argument marginal.scale to avPlots to scale the added-variable plot for
   Y on X|Z using the scale from the marginal plot of Y vs X ignoring X.  The
   default is FALSE, corresponding to using scaling to maximize resolution or
   use xlim and ylim to set user scaling.
 * Fixed bugs in Anova.survreg() that could affect types II, II tests, both Wald
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 10 Sep 2014
[ 20:50 gerald search for other commits by this committer ] Original commit   Revision:367888 (Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Sat, 23 Aug 2014
[ 17:30 dbn search for other commits by this committer ] Original commit   Revision:365761
Update math/R-cran-car to 2.0-21.

ChangeLog:
 * residualPlot error when using 'type="rstudent" has been fixed.
 * Minor change to "recode" documentation; improved error checking in
    recode().
 * Fixed a bug in gamLine with non-canonical links. (Thanks to Hani Christoph)
 * Added has.intercept.multinom() to make Anova() work with multinom objects
    fit to a dichotomous response (after bug report by Kristian Hovde Liland).
 * Replaced vif.lm() with vif.default() to cover wider variety of models
    (after question by Laura Rigg about gls models).
 * Diagonal panels in scatterplotMatrix() (except for histograms) show
     groups separately when plotted by groups (suggestion by Erich Neuwirth).
 * Added vcov. argument to Anova.lm().
Sat, 3 May 2014
[ 09:41 dbn search for other commits by this committer ] Original commit   Revision:352896
Update math/R-cran-car to 2.0-20.

ChangeLog:
 o Added new id.method="r" to showLabels for labeling plots of residuals;
   default id.method changed in residualPlots.
 o Fixed handling of labels argument to outlierTest()
   (bug report by Stephane Laurent).
 o Accommodate numeric variables consisting entirely of NAs in recode()
   (suggestion of Karl Ove Hufthammer).
 o Prevent dataEllipse() from opening a graphics device when draw=FALSE
   (fixing bug reported by Rafael Laboissiere).
 o The functions makeHypothesis() and printHypothesis(), intended for
   internal use, are exported so that they can be used in other packages
   (request of Arne Henningsen).
 o Small fixes.
Mon, 10 Mar 2014
[ 20:55 gerald search for other commits by this committer ] Original commit   Revision:347809 (Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Sat, 28 Dec 2013
[ 10:28 dbn search for other commits by this committer ] Original commit   Revision:337846 (Only the first 10 of 121 ports in this commit are shown above. View all ports for this commit)
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
Wed, 27 Nov 2013
[ 18:56 dbn search for other commits by this committer ] Original commit   Revision:335044 (Only the first 10 of 119 ports in this commit are shown above. View all ports for this commit)
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
Wed, 13 Nov 2013
[ 08:19 bf search for other commits by this committer ] Original commit   Revision:333659 (Only the first 10 of 130 ports in this commit are shown above. View all ports for this commit)
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
Sat, 26 Oct 2013
[ 00:52 gerald search for other commits by this committer ] Original commit   Revision:331644 (Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 6 Oct 2013
[ 17:32 dbn search for other commits by this committer ] Original commit   Revision:329606
Update math/R-cran-car to 2.0.19.

ChangeLog:
 * fixed scoping problems in Boot, bootCase, and ncvTest
 * added an argument to deltaMethod for passing arguments to get scoping right
when calling linearHypothesis in another function; other deltaMethod bugs fixed
 * slight modification to documentation of Boot
 * summary() method for "Anova.mlm" objects now returns an object, printed by a
corresponding print() method (adapting code contributed by Gabriel Baud-Bovy).
 * added .merMod methods to Anova(), deltaMethod(), linearHypothesis(),
matchCoefs(), and unexported utilities df.residual() and has.intercept();
insured compatibility with nlme and CRAN and developments versions of lme4.
 * added use argument to scatterplotMatrix() (suggstion of Antoine Lizee).
 * export linearHypothesis.default() for use in other packages (suggestion of
Achim Zeileis).
 * small changes and fixes.
Fri, 20 Sep 2013
[ 20:55 bapt search for other commits by this committer ] Original commit   Revision:327746 (Only the first 10 of 665 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
math)
Mon, 17 Jun 2013
[ 11:50 dbn search for other commits by this committer ] Original commit   Revision:321100
Update math/R-cran-car to 2.0-18.

ChangeLog:
 o Bug fix to boot with type="residual"
 o Added densityPlot() function.

Approved by:	eadler,bdrewery (mentors, implicit)
Tue, 28 May 2013
[ 15:15 bf search for other commits by this committer ] Original commit   Revision:319316 (Only the first 10 of 140 ports in this commit are shown above. View all ports for this commit)
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
Mon, 6 May 2013
[ 18:10 dbn search for other commits by this committer ] Original commit   Revision:317535
Update math/R-cran-car to 2.0-17.

ChangeLog:
    o Add a variable to AMSsurvey.
    o Fix to residualPlots to compute lack of fit tests with missing values and
      glms.
    o Fix to residualPlots with a 0/1 variable not declared a factor.
    o Boxplot() now works properly with at argument passed to boxplot() via ...
      (contribution of Steve Ellison).
    o qqPlot.lm() now works with "aov" objects (fixing problem reported by
      Thomas Burk).
    o Small fixes to code and docs.

Approved by:	eadler,bdrewery (mentors, implicit)
Thu, 7 Mar 2013
[ 04:21 bf search for other commits by this committer ] Original commit   Revision:313562 (Only the first 10 of 116 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.15.3, and adjust dependent ports
Wed, 20 Feb 2013
[ 17:49 dbn search for other commits by this committer ] Original commit   Revision:312635
Update math/R-cran-car to 2.0-16.

Changes to Version 2.0-16

    o Fixed bug in printing of hypotheses by linearHypothesis(), where numeric
constants of the form 1.* or -1.* were printed incorrectly (reported by
Johannes Kutsam).

    o Fixed a bug in showLabels() with multiple groups in the scatterplot() and
scatterplotMatrix() function

    o linearHypothesisTest() now tolerates newlines and tabs in hypotheses
(suggestion of David Hugh-Jones).

    o two bugs fixed in Boot() (found by David Pain) changed argument f to f.
in bootCase().

    o summary.Boot(), confint.Boot() and hist.Boot() handle aliases correctly.

    o Boxplot.formula() now accepts more than one conditioning variable
(suggestion of Christina Yassouridis).

    o Small fixes.

Approved by:	bdrewery (mentor)
Wed, 16 Jan 2013
[ 20:15 dbn search for other commits by this committer ] Original commit   Revision:310522 (Only the first 10 of 21 ports in this commit are shown above. View all ports for this commit)
 - Update to my new FreeBSD address
 - Trim header
 - Add myself as creator of devel/svn2git (see r272261)

Approved by:	eadler|bdrewery (mentor)
Fri, 4 Jan 2013
[ 17:51 bf search for other commits by this committer ] Original commit   Revision:309935 (Only the first 10 of 116 ports in this commit are shown above. View all ports for this commit)
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
Sat, 20 Oct 2012
[ 16:19 rakuco search for other commits by this committer ] Original commit   Revision:306202
Update to 2.0-15.

PR:		ports/172776
Submitted by:	David Naylor <naylor.b.david@gmail.com> (maintainer)
Feature safe:	yes
Mon, 1 Oct 2012
[ 09:51 wen search for other commits by this committer ] Original commit   Revision:305102
- Update to 2.0-14 [1]
- Convert to new Makefile format

PR:		172136 [1]
Submitted by:	David Naylor <naylor.b.david@gmail.com> (maintainer) [1]
Tue, 26 Jun 2012
[ 23:57 bf search for other commits by this committer ] Original commit  (Only the first 10 of 87 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
Fri, 4 May 2012
[ 20:56 bf search for other commits by this committer ] Original commit  (Only the first 10 of 89 ports in this commit are shown above. View all ports for this commit)
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
Tue, 27 Mar 2012
[ 20:08 rm search for other commits by this committer ] Original commit 
- update to 2.0-12

PR:             166437
Submitted by:   David Naylor <naylor.b.david at gmail dot com> (maintainer)
Feature safe:   yes
Sat, 3 Mar 2012
[ 16:59 bf search for other commits by this committer ] Original commit  (Only the first 10 of 80 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.14.2, and adjust dependent ports
Wed, 18 Jan 2012
[ 23:04 bf search for other commits by this committer ] Original commit  (Only the first 10 of 58 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.14.1, and adjust dependent ports
Sun, 27 Nov 2011
[ 07:02 bf search for other commits by this committer ] Original commit  (Only the first 10 of 62 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
Tue, 15 Nov 2011
[ 20:09 tota search for other commits by this committer ] Original commit  (Only the first 10 of 49 ports in this commit are shown above. View all ports for this commit)
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
Sat, 29 Oct 2011
[ 18:20 tota search for other commits by this committer ] Original commit 
- Update to 2.0-11

PR:             ports/161918
Submitted by:   David Naylor (maintainer)
Tue, 11 Oct 2011
[ 14:19 bf search for other commits by this committer ] Original commit  (Only the first 10 of 58 ports in this commit are shown above. View all ports for this commit)
update math/R to 2.13.2, and adjust dependent ports
Thu, 28 Jul 2011
[ 04:19 bf search for other commits by this committer ] Original commit  (Only the first 10 of 23 ports in this commit are shown above. View all ports for this commit)
update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:             158947 [1]
Submitted by:   wen ([1], independently)
Sun, 8 May 2011
[ 05:11 bf search for other commits by this committer ] Original commit 
update to 2.0-10

PR:             156858
Submitted by:   David Naylor (maintainer)
Sat, 7 May 2011
[ 03:29 bf search for other commits by this committer ] Original commit  (Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
- update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:             153309 [1]
Approved by:    thierry (rkward*), wen (rpy*, R-cran-*)
Sat, 30 Apr 2011
[ 07:59 bf search for other commits by this committer ] Original commit 
Use DISTVERSION for CRAN ports with hyphenated versions

Approved by:    wen
Mon, 28 Feb 2011
[ 16:03 bf search for other commits by this committer ] Original commit  (Only the first 10 of 18 ports in this commit are shown above. View all ports for this commit)
- Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
  where necessary

Approved by:    makc, miwi (mentors, implicit)
Sat, 29 Jan 2011
[ 16:53 bf search for other commits by this committer ] Original commit  (Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
- Update R to 2.12.1
- Bump PORTREVISION of
  dependent ports

Approved by:    makc, miwi (mentors, implicit)
                pav (portmgr)
Feature safe:   yes
Sun, 26 Sep 2010
[ 07:59 tota search for other commits by this committer ] Original commit  (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
- Add CRAN_Include_MAINTAINER tag to Mk/bsd.cran.mk
- Rename R_MOD to USE_R_MOD to be suitable for bsd.port.mk
- Remove math/R-cran-sm/files/bsd.cran.mk to complete the moving

Approved by:    wen (via e-mail)
Sun, 15 Aug 2010
[ 02:48 tota search for other commits by this committer ] Original commit  (Only the first 10 of 16 ports in this commit are shown above. View all ports for this commit)
- Use R_MOD_AUTOPLIST instead of pkg-plist

Approved by:    wen
Sat, 24 Apr 2010
[ 07:35 wen search for other commits by this committer ] Original commit 
- Update to 1.2.16

Approved by:    maintainer(implicit)
Sun, 28 Mar 2010
[ 06:47 dinoex search for other commits by this committer ] Original commit  (Only the first 10 of 4470 ports in this commit are shown above. View all ports for this commit)
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Fri, 5 Feb 2010
[ 11:46 dinoex search for other commits by this committer ] Original commit  (Only the first 10 of 4271 ports in this commit are shown above. View all ports for this commit)
- update to jpeg-8
Fri, 25 Dec 2009
[ 14:35 miwi search for other commits by this committer ] Original commit  (Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
- Fix build after math/R update

Submitted by:   wen@, "b. f." <bf1783@googlemail.com>
Fri, 16 Oct 2009
[ 14:00 wen search for other commits by this committer ] Original commit 
- Change maintainer's email address

PR:             ports/139655
Submitted by:   David Naylor <naylor.b.david@gmail.com> (maintainer)
Approved by:    miwi(mentor)
Fri, 31 Jul 2009
[ 13:57 dinoex search for other commits by this committer ] Original commit  (Only the first 10 of 3009 ports in this commit are shown above. View all ports for this commit)
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Sat, 2 May 2009
[ 17:33 wxs search for other commits by this committer ] Original commit 
This package accompanies J. Fox, An R and S-PLUS Companion to Applied
Regression, Sage, 2002. The package contains mostly functions for applied
regression, linear models, and generalized linear models, with an emphasis on
regression diagnostics, particularly graphical diagnostic methods. There are
also some utility functions. With some exceptions, I have tried not to duplicate
capabilities in the basic distribution of R, nor in widely used packages. Where
relevant, the functions in car are consistent with na.action = na.omit or
na.exclude.

WWW:    http://cran.r-project.org/web/packages/car/index.html

PR:             ports/133708
Submitted by:   David Naylor <naylor.b.david@gmail.com>

Number of commits found: 80