science/netcdf: Update to 4.8.1

- Update MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases

graphics/gmt: Use upstream release archive and remove fftw3 dependency

Using upstream release archive as suggested by Porters Handbook,
this also reduces download size considerably
Remove fftw3 dependency, gmt depends on a legacy version of fftw3
Remove unnecessary variables in CMAKE_ARGS

PR:		261249
Reviewed by:	lbartoletti@ (maintainer)

graphics/gmt: fix build on big-endian

ld: error: src/libgmt.so.6.3.0: undefined reference to bswap32
[--no-allow-shlib-undefined]

graphics/gmt: Update to 6.3.0

- Update to 6.3.0
- Use PCRE2 instead of PCRE(1)
- Fix WWW
- remove files/patch-src_gmt__common__sighandler.c fixed upstream

Changes:
  - https://docs.generic-mapping-tools.org/6.3/changes.html

Reported by:	dizzy

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

graphics/gdal: Set the default options as a workable set

- reinstate r552962 (was reverted in r553000)
- remove pkg-message from qgis and qgis-ltr
- Bump PORTREVSION on all consumers

PR:		224004
Approved by:	portmgr

Bump PORTREVISION for science/netcdf shlib change

graphics/gmt: Fix build on aarch64

Approved by:	portmgr (tier-2 blanket)

graphics/gmt: Update to 6.1.1

Changelog:
  - https://forum.generic-mapping-tools.org/t/gmt-6-1-1-has-been-released/839

graphics/gmt: Update to 6.1.0

- Update graphics/gmt to 6.1.0
- Remove graphics/gmt6 please use graphics/gmt instead
- Rename graphics/gmt5-dcw to graphics/gmt-dcw and graphics/gmt5-gshhg to
graphics/gmt-gshhg

Bump PORTREVISION for graphics/gdal shlib change

Change my mail address to lbartoletti@FreeBSD.org

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D23169

Sprinkle more USES=xorg

Update science/netcdf to 4.6.3

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases
		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md

- Update to 4.5.18

PR:		230795
Submitted by:	holishingtest@gmail.com
Approved by:	maintainer

graphics/gmt: Update to 4.5.17

lbartoletti@tuxfamily.org takes maintainership.

Also changed to DISTVERSION.

PR:		225786
Submitted by:	lbartoletti@tuxfamily.org
Approved by:	tcberner (mentor, implicit)

Update to 4.5.0

- Pet portlint: reorder LICENSE knobs

Changes:	https://github.com/Unidata/netcdf-c/releases

Update to 4.5.16

- Update GSHHG to 2.3.7

Unbreak this port

PR:		221334
Reported by:	pi
MFH:		2017Q3

Mark BROKEN: fails to build

cc -O2 -pipe -fstack-protector -fno-strict-aliasing -Wall  -fPIC
-fno-strict-aliasing -std=c99 -I/usr/local/include -I/usr/local/include
-DGMT_SHARE_PATH=\"/usr/local/share/gmt\"
-DGMT_GSHHG_PATH=\"/usr/local/share/gmt/coast\"   -DUSE_GDAL  -c -o gmt_io.o
gmt_io.c
In file included from gmt_io.c:90:
In file included from ./gmt.h:631:
In file included from ./gmt_gdalread.h:19:
In file included from /usr/local/include/gdal.h:42:
/usr/local/include/cpl_port.h:126:99: error: invalid token at start of a
preprocessor expression
#if defined(GDAL_COMPILATION) && defined(__sun__) && __STDC_VERSION__ >= 201112L
&& _XOPEN_SOURCE < 600

Reported by:	pkg-fallout

- Update to 4.5.15

Remove ${PORTSDIR}/ from dependencies, categories d, e, f, and g.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 4.5.14

PR:		204445
Submitted by:	tkato432@yahoo.com

Fix a bunch of false positive that are fetchable

Reported by:	ak

Mark a few ports BROKEN: unfetchable

- Update to 2.0.0
- Bump PORTREVISION for graphics/gdal shlib change
- Mark astro/merkaartor as BROKEN

Changes:	http://trac.osgeo.org/gdal/wiki/Release/2.0.0-News

- Strip libraries

Upgrade to 4.5.13.

Cleanup plist

Convert a bunch of USE_BZIP2 to USES=tar:bzip2

Approved by:	portmgr (not really, but touches unstaged ports)

- Remove USE_AUTOTOOLS=libtool
- Bump PORTREVISION for package change
- Bump PORTREVISION for graphics/gdal shlib change [1]

Approved by:	portmgr (implicit) [1]

- Update to 4.3.2 (from science/netcdf4)
- Bump PORTREVISION for science/netcdf shlib change and
  dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]

- Update to 1.11.0
- Use PORTDATA
- Bump PORTREVISION for graphics/gdal shlib change

Changes:	http://trac.osgeo.org/gdal/wiki/Release/1.11.0-News

- Update to 4.5.12

PR:		187290

- Update MASTER_SITES
- Fix SHEBANG_FILES
- Fix pkg-plist
- use new options helper

PR:		187037
Submitted by:	Ports fury

graphics/gmt: Update to latest 4.x version (4.5.11), Undeprecate

The distfiles weren't actually removed, they were placed in a
subfolder called "legacy".  However, a second distfile wasn't
available in the exact specified name.

The easiest fix was to upgrade to the latest 4.x version.
Version 5.1 is currently available though, in cases somebody
wants to take over the port and bring it to the very latest.
The EPS option mispelling was also fixed.  While here, fix
DragonFly support too.

Back to the futur

Mark as deprecated unmaintained ports for which no public distfiles are
available for part or all the needed distfiles.

Reported by:	distillator

- Update to 4.5.9
- Stage support

PR:		180702
Submitted by:	Ports Fury

Add NO_STAGE all over the place in preparation for the staging support (cat:
graphics)

- Update to 1.10.0
- Update COMMENT and remove leading indefinite article from COMMENT
- Bump PORTREVISION for graphics/gdal shlib change

Changes:	http://trac.osgeo.org/gdal/wiki/Release/1.10.0-News

graphics/gmt: Restore accidently removed USE_BZIP2

USE_BZIP2 should not have been removed.  The port was unable to get past
the fetch stage due to a distinfo mismatch.

Approved by:	bapt/culot (mentors, implicit)

Mark job unsafe
Convert to USES=gmake
Use options helpers

Conver to new options framework

- update png to 1.5.10

- Bump PORTREVISION for graphics/gdal shlib change

Convert from USE_XLIB to USE_XORG

Approved by:    eadler (mentor)

- Update to 4.5.8, thus making available again

- OPTIONSify

PR:             ports/166691
Submitted by:   Oliver Hartmann <ohartman@zedat.fu-berlin.de>

Deprecate; this port is so far out of date that the distfile was removed by
upstream five years ago, so the port has been broken since then.

PR:             ports/92651
Submitted by:   edwin
Approved by:    maintainer (implicit from timeout)

-remove MD5

BROKEN should not be quoted.
No functional change.

Remove dead MASTER_SITES.
Please note that this port needs to be updated to 3.4.6 because
3.4.1 isn't working available from their website anymore.

science/netcdf
- Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version
number

PR:             111347
Submitted by:   Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:    clsung (mentor)

Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.

PR:             92497
Submitted by:   /me
Repocopied by:  marcus

SHA256ify as much as possible (other files are MIA)
Approved by: krion@

- Add missing checksums in distinfo for 'make "WITH_EVERYTHING=y"' case.

PR:             ports/66952
Submitted by:   Stefan `Sec` Zehl <sec@42.org>

SIZEify (maintainer timeout)

BROKEN: Does not compile on !i386

De-pkg-comment.

New port: graphics/gmt

        The Generic Mapping Tools data processing and display
        software package.

PR:             ports/37972
Submitted by:   Stefan `Sec` Zehl <sec@ice.42.org>