graphics/colmap: update to 3.8

 - add two missing dependencies
 - libflann is no longer bundled, build with math/flann instead

Changelog: https://colmap.github.io/changelog.html

Approved by:	flo (mentor)
Differential Revision: https://reviews.freebsd.org/D38512

*/*: Update fuz@fuz.su to fuz@FreeBSD.org

www/writefreely had a stray duplicate MAINTAINER block
from an earlier botched commit.  I did intentionally not
touch the entry in UPDATING.

Reviewed by:	eduardo, flo
Differential Revision: https://reviews.freebsd.org/D38435

*/*:	bump libboost*.so libraries consumert after Boost upgrade

graphics/colmap: update to 3.7

- Update to 3.7
- portclippy and portfmt a bit
- Assume MAINTAINER

Mk/Uses: always use colon for build/run suffix

Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.

Document in CHANGES.

PR:			266034
Exp-run by:		antoine
Approved by:		tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D36349

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

*/*: bump all consumers after recent boost upgrade

math/ceres-solver: Update 2.0.0 -> 2.1.0

Bump 3 ports.

devel/boost-all: bump all library consumers after boost upgrade

PR:	246106

devel/glog: Update to 0.6.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/google/glog/releases

*/*: Remove more compiler:openmp instances

Reported by: antoine@
Fixes:	07fb2d5e9d00

math/cgal: Update to 5.3

Changes:
 - https://www.cgal.org/2021/07/06/cgal53/
 - fix pkg-plist with QT5 option enabled

PR:		258085
Approved by:	wen

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

math/cgal: Update to 5.2.1

 - Remove files/patch-CMakeLists.txt
 - Remove LD_CONFIG and move USES (pet porlint)
 - Bump ports

Changes:
   - https://www.cgal.org/2021/03/17/cgal521/
   - https://www.cgal.org/2020/12/22/cgal52/

PR:		255171
Approved by:	wen

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

Orphan a few more ports

aarch64 support OpenMP since FreeBSD 12.2

graphics/colmap: unbreak on FreeBSD >= 13 i386

cc1plus: out of memory allocating 65536 bytes after a total of 0 bytes

Reported by:	pkg-fallout

graphics/colmap: Use latest Sphinx version

Approved by:	portmgr blanket

- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run

math/ceres-solver: update to 2.0.0

Changes:	https://github.com/ceres-solver/ceres-solver/compare/1.14.0...2.0.0
Reported by:	Repology

graphics/colmap: update to 3.6

Changes:	https://github.com/colmap/colmap/releases/tag/3.6

Update Sphinx

- Repocopy textproc/py-sphinx to textproc/py-sphinx18

  Update it to 1.8.5 (latest version from 1.8.X).
  This version supports Python 2 and 3.
  Add test target.

- textproc/py-sphinx: Update to 3.0.2

  Python 3 only (3.5+).
  Add test target.

- Mk/Uses/python.mk: Add PY_SPHINX

smath/cgal: Update to 5.0.2

The new version of CGAL brings improvements and a lot of changes, including 2
major ones [1](header only[2] and require c++14) requiring to patch all software
depending on it.

[1] https://www.cgal.org/2019/11/08/cgal50/
[2] https://doc.cgal.org/latest/Manual/installation.html

math/cgal:

   - Update to 5.0.2

databases/sfcgal:

   - Fix with cgal5 : use c++14 and add gmpxx link

Document OpenMP from base system cannot be used in some cases

devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136

Add USES=xorg USES=gl, ports categories g

Add USES=xorg and USES=gl to ports in categories starting with 'g'.
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.

Drop verbose flag for CTest after r444324

ninja: error: unknown target 'ARGS=-V'

Drop C++11 workaround for GCC < 6 after r449590

lang/gcc5 will expire in ~1 month. If someone still uses lang/gcc48
they should backport C++11 fix instead. QA on GCC architecuters is
currently limited to powerpc64 which uses GCC_DEFAULT.

PR:		193528

devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

graphics/colmap: unbreak OPENMP with GCC 9

In file included from lib/VLFeat/kmeans.h:21,
                 from lib/VLFeat/kmeans.c:363:
lib/VLFeat/kmeans.c: In function '_vl_kmeans_quantize_f':
lib/VLFeat/mathop.h:92:37: error: 'vl_infinity_d' not specified in enclosing
'parallel'
   92 | #define VL_INFINITY_D (vl_infinity_d.value)
      |                       ~~~~~~~~~~~~~~^~~~~~~
lib/VLFeat/kmeans.c:685:34: note: in expansion of macro 'VL_INFINITY_D'
  685 |       TYPE bestDistance = (TYPE) VL_INFINITY_D ;
      |                                  ^~~~~~~~~~~~~
In file included from lib/VLFeat/kmeans.c:1782:
lib/VLFeat/kmeans.c:672:9: error: enclosing 'parallel'
  672 | #pragma omp parallel default(none) \
      |         ^~~
In file included from lib/VLFeat/kmeans.c:1788:
lib/VLFeat/kmeans.c: In function '_vl_kmeans_quantize_d':
lib/VLFeat/kmeans.c:685:27: error: 'vl_infinity_d' not specified in enclosing
'parallel'
  685 |       TYPE bestDistance = (TYPE) VL_INFINITY_D ;
lib/VLFeat/kmeans.c:672:9: error: enclosing 'parallel'
  672 | #pragma omp parallel default(none) \
      |         ^~~

PR:		238330
Reported by:	antoine (via exp-run)

graphics/colmap: unbreak OPENMP on -CURRENT i386 after r499662

ld: error: undefined symbol: __atomic_load
>>> referenced by PoissonRecon.cpp
>>>               PoissonRecon.cpp.o:(.omp_outlined.) in archive
lib/PoissonRecon/libpoisson_recon.a

ld: error: undefined symbol: __atomic_compare_exchange
>>> referenced by PoissonRecon.cpp
>>>               PoissonRecon.cpp.o:(.omp_outlined.) in archive
lib/PoissonRecon/libpoisson_recon.a

Reported by:	pkg-fallout

math/ceres-solver: don't force GCC for OpenMP on -CURRENT

Limited to amd64 and i386. LLVM openmp doesn't support other
architectures on FreeBSD (unlike Linux) but it's only important where
Clang is default e.g., aarch64, armv6, armv7.

math/ceres-solver: drop GCC RPATH after r499061

USES=fortran was used to ensure linking against libceres picks up
correct libgcc_s to satisfy dependencies e.g., suitesparse, *blas.

graphics/colmap: drop USES=gmake

Ignored: is marked as broken: USES=gmake is incompatible with cmake's
ninja-generator

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call

Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645

graphics/colmap: drop FreeBSD 11.1 support per EOL

Change x11/xorgproto to become a build dep

Change x11/xorgproto to become a build time dependency when added to
USE_XORG.  Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.

PR:		230909
Reviewed by:	eadler
Approved by:	portmgr (antoine)
Obtained
from:	https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run:	antoine
Differential Revision:	https://reviews.freebsd.org/D16906

graphics/colmap: update to 3.5

Changes:	https://github.com/colmap/colmap/blob/3.5/CHANGELOG.txt

devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540

devel/boost-*: update to 1.67.0

Changes:	http://www.boost.org/users/history/version_1_67_0.html
PR:		227427
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D15030

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

graphics/colmap: unbreak OPENMP=off after r446135

src/ext/PBA/SparseBundleCPU.cpp:1208:7: error: non-constant-expression cannot be
narrowed from type 'size_t' (aka 'unsigned long') to 'int' in initializer list
[-Wc++11-narrowing]
      RUN_THREAD(ComputeProjection, threads[i], last - first, camera, point,
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:933:3: note: expanded from macro 'RUN_THREAD'
  DECLEAR_THREAD_DATA(X, __VA_ARGS__); \
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:908:30: note: expanded from macro
'DECLEAR_THREAD_DATA'
  X##_STRUCT<Float> tdata = {i, __VA_ARGS__}; \
                             ^
src/ext/PBA/SparseBundleCPU.cpp:1537:68: error: non-constant-expression cannot
be narrowed from type 'size_t' (aka 'unsigned long') to 'int' in initializer
list [-Wc++11-narrowing]
                 intrinsic_fixed, radial_distortion, shuffle, jct, first);
                                                                   ^~~~~
src/ext/PBA/SparseBundleCPU.cpp:933:26: note: expanded from macro 'RUN_THREAD'
  DECLEAR_THREAD_DATA(X, __VA_ARGS__); \
                         ^~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:908:33: note: expanded from macro
'DECLEAR_THREAD_DATA'
  X##_STRUCT<Float> tdata = {i, __VA_ARGS__}; \
                                ^~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:1537:68: note: insert an explicit cast to
silence this issue
                 intrinsic_fixed, radial_distortion, shuffle, jct, first);
                                                                   ^~~~~
                                                                  
static_cast<int>(

graphics/colmap: don't use pkg-plist for a single file after r460536

graphics/colmap: update to 3.4

Changes:	https://github.com/colmap/colmap/blob/3.4/CHANGELOG.txt

graphics/colmap: drop Clang workaround

devel/boost-*: update to 1.66.0

Changes:	http://www.boost.org/users/history/version_1_66_0.html
PR:		223922
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D13279

New USES=eigen

  Usage:
    USES=eigen:<version>[,<type>]

    version: 2 or 3 (required)
    type:    build (default), run

  For example:
    USES=eigen:2,build,run
  will add a BUILD- and RUN_DEPENDS on math/eigen2, and
    USES=eigen:3
  will add a BUILD_DEPENDS on math/eigen3.

* Convert the existing ports to use it
  - biology/iqtree: remove run time dependency (seemed not to be needed)
  - graphics/movit: remove run time dependency (seemed not to be needed)
  - science/avogadro: add run time dependeny (installed cmake file requires it
to be present)

Reviewed by:	rakuco, mat
Differential Revision:	https://reviews.freebsd.org/D13702

Improve CMake style in my ports

- Convert to CMAKE_{ON,OFF} helpers
- Convert to _CMAKE_BOOL option helpers
- android-file-transfer: Share _CMAKE_BOOL via _IMPLIES
- Annotate types

graphics/colmap: update to 3.3

Changes:	https://github.com/colmap/colmap/blob/3.3/CHANGELOG.txt

Bump portrevision to chase graphics/glew shard library version update.

PR:		223370
Submitted by:	zeising
exp-run by:	antoine
Approved by:	antoine

graphics/colmap: unbreak -msse -mno-sse2 build

devel/boost-*: update to 1.65.1

Changes:	http://www.boost.org/users/history/version_1_65_1.html
PR:		218835
Approved by:	maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month)
Tested by:	jhibbits (on powerpc64, earlier version)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582

devel/boost-*: enable C++11 features

PR:		218835
Obtained from:	https://github.com/DragonFlyBSD/DeltaPorts/pull/690
Approved by:	maintainer timeout (2 months)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

graphics/colmap: try#2 to unbreak on non-x86

../ext/VLFeat/libvlfeat.a(host.c.o): In function `_vl_x86cpu_info_init':
host.c:(.text+0x1c): undefined reference to `_vl_cpuid'
host.c:(.text+0x40): undefined reference to `_vl_cpuid'
collect2: error: ld returned 1 exit status

Reported by:	pkg-fallout (aarch64, armv6)

graphics/colmap: update to 3.2

Changes:	https://github.com/colmap/colmap/blob/3.2/CHANGELOG.txt

graphics/colmap: try to unbreak on non-x86

g++5: error: unrecognized command line option '-mfpmath=sse'

Reported by:	pkg-fallout (aarch64)

graphics/colmap: update to 3.1.4

Changes:	https://github.com/colmap/colmap/blob/542ce21/CHANGELOG.txt

graphics/colmap: update to 3.0

Changes:	https://github.com/colmap/colmap/compare/2.1...3.0

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

devel/boost-*: update to 1.64.0

Changes:	http://www.boost.org/users/history/version_1_64_0.html
PR:		218835
Approved by:	office (bapt)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D10472

graphics/colmap: drop g++49 workaround after r437437

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

devel/boost-*: update to 1.63.0

Changes:	http://www.boost.org/users/history/version_1_63_0.html
PR:		215598
Exp-run by:	antoine
Approved by:	office (bapt)
MFH:		2017Q1

Drop pre-10.3 support in my ports

Figuring out which GCC hacks are safe to drop is tricky but at least
devel/fb-adb is limited to x86 due to ADA bootstrap.

graphics/colmap: update to real 2.1 tag

Changes:	https://github.com/colmap/colmap/compare/55fbe10...2.1

graphics/colmap: always build SIMD support

graphics/colmap: enable OPENMP on 10.2+ after r428641

graphics/colmap: unblock on amd64 due to intermittent errors

FreeBSD 9.3 amd64:
  51: Test command: src/util/threading_test
  51: Test timeout computed to be: 9.99988e+06
  51: Running 23 test cases...
  51: src/util/threading_test.cc(309): error: in "TestDefaultCallback": check
called_back1 has failed
  51:
  51: *** 1 failure is detected in the test module "util/threading"

FreeBSD 11.0 amd64:
  51: Test command: src/util/threading_test
  51: Test timeout computed to be: 9.99988e+06
  51: Running 23 test cases...
  51: src/util/threading_test.cc(183): error: in "TestThreadPauseStop": check
thread.IsRunning() has failed
  51: src/util/threading_test.cc(184): error: in "TestThreadPauseStop": check
!thread.IsFinished() has failed
  51:
  51: *** 2 failures are detected in the test module "util/threading"

Reported by:	pkg-fallout (r428457 and r428600 builds were green)

graphics/colmap: don't append -O1 for debug builds

graphics/colmap: add new port

COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View
Stereo (MVS) pipeline with a graphical and command-line interface. It
offers a wide range of features for reconstruction of ordered and
unordered image collections.

https://colmap.github.io/