devel/boost-all: bump all library consumers after boost upgrade

PR:	246106

devel/glog: Update to 0.6.0

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/google/glog/releases

*/*: Remove more compiler:openmp instances

Reported by: antoine@
Fixes:	07fb2d5e9d00

math/cgal: Update to 5.3

Changes:
 - https://www.cgal.org/2021/07/06/cgal53/
 - fix pkg-plist with QT5 option enabled

PR:		258085
Approved by:	wen

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

math/cgal: Update to 5.2.1

 - Remove files/patch-CMakeLists.txt
 - Remove LD_CONFIG and move USES (pet porlint)
 - Bump ports

Changes:
   - https://www.cgal.org/2021/03/17/cgal521/
   - https://www.cgal.org/2020/12/22/cgal52/

PR:		255171
Approved by:	wen

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

Orphan a few more ports

aarch64 support OpenMP since FreeBSD 12.2

graphics/colmap: unbreak on FreeBSD >= 13 i386

cc1plus: out of memory allocating 65536 bytes after a total of 0 bytes

Reported by:	pkg-fallout

graphics/colmap: Use latest Sphinx version

Approved by:	portmgr blanket

- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run

math/ceres-solver: update to 2.0.0

Changes:	https://github.com/ceres-solver/ceres-solver/compare/1.14.0...2.0.0
Reported by:	Repology

graphics/colmap: update to 3.6

Changes:	https://github.com/colmap/colmap/releases/tag/3.6

Update Sphinx

- Repocopy textproc/py-sphinx to textproc/py-sphinx18

  Update it to 1.8.5 (latest version from 1.8.X).
  This version supports Python 2 and 3.
  Add test target.

- textproc/py-sphinx: Update to 3.0.2

  Python 3 only (3.5+).
  Add test target.

- Mk/Uses/python.mk: Add PY_SPHINX

smath/cgal: Update to 5.0.2

The new version of CGAL brings improvements and a lot of changes, including 2
major ones [1](header only[2] and require c++14) requiring to patch all software
depending on it.

[1] https://www.cgal.org/2019/11/08/cgal50/
[2] https://doc.cgal.org/latest/Manual/installation.html

math/cgal:

   - Update to 5.0.2

databases/sfcgal:

   - Fix with cgal5 : use c++14 and add gmpxx link

Document OpenMP from base system cannot be used in some cases

devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136

Add USES=xorg USES=gl, ports categories g

Add USES=xorg and USES=gl to ports in categories starting with 'g'.
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.

Drop verbose flag for CTest after r444324

ninja: error: unknown target 'ARGS=-V'

Drop C++11 workaround for GCC < 6 after r449590

lang/gcc5 will expire in ~1 month. If someone still uses lang/gcc48
they should backport C++11 fix instead. QA on GCC architecuters is
currently limited to powerpc64 which uses GCC_DEFAULT.

PR:		193528

devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

graphics/colmap: unbreak OPENMP with GCC 9

In file included from lib/VLFeat/kmeans.h:21,
                 from lib/VLFeat/kmeans.c:363:
lib/VLFeat/kmeans.c: In function '_vl_kmeans_quantize_f':
lib/VLFeat/mathop.h:92:37: error: 'vl_infinity_d' not specified in enclosing
'parallel'
   92 | #define VL_INFINITY_D (vl_infinity_d.value)
      |                       ~~~~~~~~~~~~~~^~~~~~~
lib/VLFeat/kmeans.c:685:34: note: in expansion of macro 'VL_INFINITY_D'
  685 |       TYPE bestDistance = (TYPE) VL_INFINITY_D ;
      |                                  ^~~~~~~~~~~~~
In file included from lib/VLFeat/kmeans.c:1782:
lib/VLFeat/kmeans.c:672:9: error: enclosing 'parallel'
  672 | #pragma omp parallel default(none) \
      |         ^~~
In file included from lib/VLFeat/kmeans.c:1788:
lib/VLFeat/kmeans.c: In function '_vl_kmeans_quantize_d':
lib/VLFeat/kmeans.c:685:27: error: 'vl_infinity_d' not specified in enclosing
'parallel'
  685 |       TYPE bestDistance = (TYPE) VL_INFINITY_D ;
lib/VLFeat/kmeans.c:672:9: error: enclosing 'parallel'
  672 | #pragma omp parallel default(none) \
      |         ^~~

PR:		238330
Reported by:	antoine (via exp-run)

graphics/colmap: unbreak OPENMP on -CURRENT i386 after r499662

ld: error: undefined symbol: __atomic_load
>>> referenced by PoissonRecon.cpp
>>>               PoissonRecon.cpp.o:(.omp_outlined.) in archive
lib/PoissonRecon/libpoisson_recon.a

ld: error: undefined symbol: __atomic_compare_exchange
>>> referenced by PoissonRecon.cpp
>>>               PoissonRecon.cpp.o:(.omp_outlined.) in archive
lib/PoissonRecon/libpoisson_recon.a

Reported by:	pkg-fallout

math/ceres-solver: don't force GCC for OpenMP on -CURRENT

Limited to amd64 and i386. LLVM openmp doesn't support other
architectures on FreeBSD (unlike Linux) but it's only important where
Clang is default e.g., aarch64, armv6, armv7.

math/ceres-solver: drop GCC RPATH after r499061

USES=fortran was used to ensure linking against libceres picks up
correct libgcc_s to satisfy dependencies e.g., suitesparse, *blas.

graphics/colmap: drop USES=gmake

Ignored: is marked as broken: USES=gmake is incompatible with cmake's
ninja-generator

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call

Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645

graphics/colmap: drop FreeBSD 11.1 support per EOL

Change x11/xorgproto to become a build dep

Change x11/xorgproto to become a build time dependency when added to
USE_XORG.  Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.

PR:		230909
Reviewed by:	eadler
Approved by:	portmgr (antoine)
Obtained
from:	https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run:	antoine
Differential Revision:	https://reviews.freebsd.org/D16906

graphics/colmap: update to 3.5

Changes:	https://github.com/colmap/colmap/blob/3.5/CHANGELOG.txt

devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540

devel/boost-*: update to 1.67.0

Changes:	http://www.boost.org/users/history/version_1_67_0.html
PR:		227427
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D15030

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

graphics/colmap: unbreak OPENMP=off after r446135

src/ext/PBA/SparseBundleCPU.cpp:1208:7: error: non-constant-expression cannot be
narrowed from type 'size_t' (aka 'unsigned long') to 'int' in initializer list
[-Wc++11-narrowing]
      RUN_THREAD(ComputeProjection, threads[i], last - first, camera, point,
      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:933:3: note: expanded from macro 'RUN_THREAD'
  DECLEAR_THREAD_DATA(X, __VA_ARGS__); \
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:908:30: note: expanded from macro
'DECLEAR_THREAD_DATA'
  X##_STRUCT<Float> tdata = {i, __VA_ARGS__}; \
                             ^
src/ext/PBA/SparseBundleCPU.cpp:1537:68: error: non-constant-expression cannot
be narrowed from type 'size_t' (aka 'unsigned long') to 'int' in initializer
list [-Wc++11-narrowing]
                 intrinsic_fixed, radial_distortion, shuffle, jct, first);
                                                                   ^~~~~
src/ext/PBA/SparseBundleCPU.cpp:933:26: note: expanded from macro 'RUN_THREAD'
  DECLEAR_THREAD_DATA(X, __VA_ARGS__); \
                         ^~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:908:33: note: expanded from macro
'DECLEAR_THREAD_DATA'
  X##_STRUCT<Float> tdata = {i, __VA_ARGS__}; \
                                ^~~~~~~~~~~
src/ext/PBA/SparseBundleCPU.cpp:1537:68: note: insert an explicit cast to
silence this issue
                 intrinsic_fixed, radial_distortion, shuffle, jct, first);
                                                                   ^~~~~
                                                                  
static_cast<int>(

graphics/colmap: don't use pkg-plist for a single file after r460536

graphics/colmap: update to 3.4

Changes:	https://github.com/colmap/colmap/blob/3.4/CHANGELOG.txt

graphics/colmap: drop Clang workaround

devel/boost-*: update to 1.66.0

Changes:	http://www.boost.org/users/history/version_1_66_0.html
PR:		223922
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D13279

New USES=eigen

  Usage:
    USES=eigen:<version>[,<type>]

    version: 2 or 3 (required)
    type:    build (default), run

  For example:
    USES=eigen:2,build,run
  will add a BUILD- and RUN_DEPENDS on math/eigen2, and
    USES=eigen:3
  will add a BUILD_DEPENDS on math/eigen3.

* Convert the existing ports to use it
  - biology/iqtree: remove run time dependency (seemed not to be needed)
  - graphics/movit: remove run time dependency (seemed not to be needed)
  - science/avogadro: add run time dependeny (installed cmake file requires it
to be present)

Reviewed by:	rakuco, mat
Differential Revision:	https://reviews.freebsd.org/D13702

Improve CMake style in my ports

- Convert to CMAKE_{ON,OFF} helpers
- Convert to _CMAKE_BOOL option helpers
- android-file-transfer: Share _CMAKE_BOOL via _IMPLIES
- Annotate types

graphics/colmap: update to 3.3

Changes:	https://github.com/colmap/colmap/blob/3.3/CHANGELOG.txt

Bump portrevision to chase graphics/glew shard library version update.

PR:		223370
Submitted by:	zeising
exp-run by:	antoine
Approved by:	antoine

graphics/colmap: unbreak -msse -mno-sse2 build

devel/boost-*: update to 1.65.1

Changes:	http://www.boost.org/users/history/version_1_65_1.html
PR:		218835
Approved by:	maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month)
Tested by:	jhibbits (on powerpc64, earlier version)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582

devel/boost-*: enable C++11 features

PR:		218835
Obtained from:	https://github.com/DragonFlyBSD/DeltaPorts/pull/690
Approved by:	maintainer timeout (2 months)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

graphics/colmap: try#2 to unbreak on non-x86

../ext/VLFeat/libvlfeat.a(host.c.o): In function `_vl_x86cpu_info_init':
host.c:(.text+0x1c): undefined reference to `_vl_cpuid'
host.c:(.text+0x40): undefined reference to `_vl_cpuid'
collect2: error: ld returned 1 exit status

Reported by:	pkg-fallout (aarch64, armv6)

graphics/colmap: update to 3.2

Changes:	https://github.com/colmap/colmap/blob/3.2/CHANGELOG.txt

graphics/colmap: try to unbreak on non-x86

g++5: error: unrecognized command line option '-mfpmath=sse'

Reported by:	pkg-fallout (aarch64)

graphics/colmap: update to 3.1.4

Changes:	https://github.com/colmap/colmap/blob/542ce21/CHANGELOG.txt

graphics/colmap: update to 3.0

Changes:	https://github.com/colmap/colmap/compare/2.1...3.0

Revision bump of all ports with USE_GL after consolidation of mesa-libs

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845

devel/boost-*: update to 1.64.0

Changes:	http://www.boost.org/users/history/version_1_64_0.html
PR:		218835
Approved by:	office (bapt)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D10472

graphics/colmap: drop g++49 workaround after r437437

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

devel/boost-*: update to 1.63.0

Changes:	http://www.boost.org/users/history/version_1_63_0.html
PR:		215598
Exp-run by:	antoine
Approved by:	office (bapt)
MFH:		2017Q1

Drop pre-10.3 support in my ports

Figuring out which GCC hacks are safe to drop is tricky but at least
devel/fb-adb is limited to x86 due to ADA bootstrap.

graphics/colmap: update to real 2.1 tag

Changes:	https://github.com/colmap/colmap/compare/55fbe10...2.1

graphics/colmap: always build SIMD support

graphics/colmap: enable OPENMP on 10.2+ after r428641

graphics/colmap: unblock on amd64 due to intermittent errors

FreeBSD 9.3 amd64:
  51: Test command: src/util/threading_test
  51: Test timeout computed to be: 9.99988e+06
  51: Running 23 test cases...
  51: src/util/threading_test.cc(309): error: in "TestDefaultCallback": check
called_back1 has failed
  51:
  51: *** 1 failure is detected in the test module "util/threading"

FreeBSD 11.0 amd64:
  51: Test command: src/util/threading_test
  51: Test timeout computed to be: 9.99988e+06
  51: Running 23 test cases...
  51: src/util/threading_test.cc(183): error: in "TestThreadPauseStop": check
thread.IsRunning() has failed
  51: src/util/threading_test.cc(184): error: in "TestThreadPauseStop": check
!thread.IsFinished() has failed
  51:
  51: *** 2 failures are detected in the test module "util/threading"

Reported by:	pkg-fallout (r428457 and r428600 builds were green)

graphics/colmap: don't append -O1 for debug builds

graphics/colmap: add new port

COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View
Stereo (MVS) pipeline with a graphical and command-line interface. It
offers a wide range of features for reconstruction of ordered and
unordered image collections.

https://colmap.github.io/