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non port: biology/wise/Makefile

Number of commits found: 25

Wednesday, 26 Jul 2023
00:48 Muhammad Moinur Rahman (bofh) search for other commits by this committer
*/*: Fix build with llvm16 on 13.2-STABLE

As like as HEAD(14.0-RELEASE) llvm16 was merged in base for 13.2-STABLE
with the OSVERSION 1302507.

- Utilize USE_CXXSTD=c++14 or similar solution where applicable
- Update conditionals to addtionally check for OSVERSION greater than
  1302507 and less than 1400000

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
commit hash: 95274bf4f99c71fc056013d966aec239161dfd74 commit hash: 95274bf4f99c71fc056013d966aec239161dfd74 commit hash: 95274bf4f99c71fc056013d966aec239161dfd74 commit hash: 95274bf4f99c71fc056013d966aec239161dfd74 95274bf
Friday, 21 Jul 2023
19:57 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/wise: Fix build with llvm16

Sponsored by:	The FreeBSD Foundation
commit hash: 1f42cbbadb84f0f50087d28aa8a349bcab2760df commit hash: 1f42cbbadb84f0f50087d28aa8a349bcab2760df commit hash: 1f42cbbadb84f0f50087d28aa8a349bcab2760df commit hash: 1f42cbbadb84f0f50087d28aa8a349bcab2760df 1f42cbb
Wednesday, 17 May 2023
16:30 Muhammad Moinur Rahman (bofh) search for other commits by this committer
*/*: llvm15 build fixes

llvm15 was also merged into 13.2-STABLE effective from OSVERSION
1302505. Fix the ports that failed to build with llvm15.

Approved by:	portmgr (blanket)
commit hash: 9b178ffd7e2fd77fecb8c80d22f7c80bc9e93977 commit hash: 9b178ffd7e2fd77fecb8c80d22f7c80bc9e93977 commit hash: 9b178ffd7e2fd77fecb8c80d22f7c80bc9e93977 commit hash: 9b178ffd7e2fd77fecb8c80d22f7c80bc9e93977 9b178ff
Sunday, 14 May 2023
19:59 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/wise: Unbreak on HEAD

- Add LICENSE BSD3CLAUSE GPLv2
- Pet portclippy
commit hash: 85200081ed9b01eefc54b77f0863e1825ce9b6ab commit hash: 85200081ed9b01eefc54b77f0863e1825ce9b6ab commit hash: 85200081ed9b01eefc54b77f0863e1825ce9b6ab commit hash: 85200081ed9b01eefc54b77f0863e1825ce9b6ab 8520008
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Friday, 8 Nov 2019
09:27 tobik search for other commits by this committer
a-b: Add missing USES={gnome,php,sdl,xorg}
Original commitRevision:517040 
Thursday, 8 Dec 2016
19:52 tijl search for other commits by this committer
Remove libintl.so.9 compatibility link that was added in r374303 to
prevent massive PORTREVISION bumps.  Bump dependent ports that have not
been bumped since.
Original commitRevision:428152 
Tuesday, 21 Jun 2016
09:05 amdmi3 search for other commits by this committer
- Switch to options helpers
- Regenerate patches with `make makepatch`
Original commitRevision:417195 
Saturday, 20 Dec 2014
17:27 bapt search for other commits by this committer
Cleanup plist
Original commitRevision:375014 
Monday, 24 Mar 2014
10:46 pawel search for other commits by this committer
- Add staging support
- Unmute install commands
Original commitRevision:348933 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Saturday, 3 Aug 2013
13:44 mat search for other commits by this committer
- Convert to new perl framework
- Remove MAKE_JOBS_SAFE=yes, it's the default.
Original commitRevision:324191 
Friday, 3 May 2013
20:48 bapt search for other commits by this committer
Fix build by adding an explicit dep on pkgconf
Original commitRevision:317247 
Saturday, 2 Mar 2013
14:50 miwi search for other commits by this committer
- Update to 2.4.1

PR:		176552
Submitted by:	Ports Fury
Original commitRevision:313250 
Friday, 8 Jan 2010
01:30 pgollucci search for other commits by this committer
- SBU_FILES += pkg-message

PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Original commit
Tuesday, 26 Dec 2006
12:46 linimon search for other commits by this committer
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
Original commit
Wednesday, 3 May 2006
23:26 edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
Original commit
Monday, 9 Jan 2006
03:25 edwin search for other commits by this committer
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
Original commit
Wednesday, 24 Sep 2003
11:32 edwin search for other commits by this committer
Port update (maintainer): biology/wise

        Fenner's porsurvey show wise no longer available at original
        site.  Original site readme shows it has moved so update
        the MASTER_SITES accordingly.

PR:             ports/57154
Submmited by:   Tony Maher <tonymaher@optushome.com.au>
Original commit
Friday, 21 Feb 2003
11:01 knu search for other commits by this committer
De-pkg-comment.
Original commit
Tuesday, 5 Nov 2002
01:44 edwin search for other commits by this committer
Modify replace RE to match syntax of sed now ("\)" -> ")"
Noticed by: bento
Original commit
Monday, 4 Nov 2002
05:46 edwin search for other commits by this committer
PERL -> REINPLACE
And some ports have USE_PERL5=yes now.
Original commit
Tuesday, 10 Sep 2002
13:58 dinoex search for other commits by this committer
"Wise2 is package that is focused on comparing DNA sequences at
the level of its conceptual translation, regardless of sequencing
error and introns."
Original commit

Number of commits found: 25