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non port: biology/wfa2-lib/distinfo

Number of commits found: 2

Friday, 29 Sep 2023
18:24 Jason W. Bacon (jwb) search for other commits by this committer
biology/wfa2-lib: Update to 2.3.4

A few bug fixes
Changes: https://github.com/smarco/WFA2-lib/releases

Reported by:    portscout
commit hash: f3576d9ad8210076b1f2e81f0bea81f48947f234 commit hash: f3576d9ad8210076b1f2e81f0bea81f48947f234 commit hash: f3576d9ad8210076b1f2e81f0bea81f48947f234 commit hash: f3576d9ad8210076b1f2e81f0bea81f48947f234 f3576d9
Monday, 30 Jan 2023
19:09 Jason W. Bacon (jwb) search for other commits by this committer
biology/wfa2-lib: Exact gap-affine algorithm using homology

The wavefront alignment (WFA) algorithm is an exact gap-affine
algorithm that takes advantage of homologous regions between the
sequences to accelerate the alignment process.  Unlike traditional
dynamic programming algorithms that run in quadratic time, the WFA runs
in time O(ns+s^2), proportional to the sequence length n and the
alignment score s, using O(s^2) memory (or O(s) using the
ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple
computational patterns that the modern compilers can automatically
vectorize for different architectures without adapting the code.
commit hash: 595d0dabcfdc4e4a2eefbfff154f7c2ab04488be commit hash: 595d0dabcfdc4e4a2eefbfff154f7c2ab04488be commit hash: 595d0dabcfdc4e4a2eefbfff154f7c2ab04488be commit hash: 595d0dabcfdc4e4a2eefbfff154f7c2ab04488be 595d0da

Number of commits found: 2