12:42 Jason W. Bacon (jwb) 

biology/wfa2-lib: Update to 2.3.5

A few bug fixes.
Changes: https://github.com/smarco/WFA2-lib/releases

Reported by:    portscout

    1de14df

18:24 Jason W. Bacon (jwb) 

biology/wfa2-lib: Update to 2.3.4

A few bug fixes
Changes: https://github.com/smarco/WFA2-lib/releases

Reported by:    portscout

    f3576d9

15:17 Jason W. Bacon (jwb) 

biology/wfa2-lib: Unbreak build on aarch64, probably others

Patch out hard-coded -march=native, not supported by clang aarch64

Reported by:    pkg-fallout

    eb340a6

19:09 Jason W. Bacon (jwb) 

biology/wfa2-lib: Exact gap-affine algorithm using homology

The wavefront alignment (WFA) algorithm is an exact gap-affine
algorithm that takes advantage of homologous regions between the
sequences to accelerate the alignment process.  Unlike traditional
dynamic programming algorithms that run in quadratic time, the WFA runs
in time O(ns+s^2), proportional to the sequence length n and the
alignment score s, using O(s^2) memory (or O(s) using the
ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple
computational patterns that the modern compilers can automatically
vectorize for different architectures without adapting the code.

    595d0da