Port details on branch 2022Q2 |
- velvet Sequence assembler for very short reads
- 1.2.10_2 biology =0 1.2.10_2Version of this port present on the latest quarterly branch.
- Maintainer: mzaki@m.u-tokyo.ac.jp
- Port Added: 2009-11-07 01:24:24
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- License: not specified in port
- WWW:
- http://www.ebi.ac.uk/~zerbino/velvet/
- Description:
- Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).
Citation:
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/velvet/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/velvet
- pkg install velvet
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: velvet
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (velvet_1.2.10.tgz) = 884dd488c2d12f1f89cdc530a266af5d3106965f21ab9149e8cb5c633c977640
SIZE (velvet_1.2.10.tgz) = 18818559
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- python3.9 : lang/python39
- Runtime dependencies:
-
- python3.9 : lang/python39
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- ===> The following configuration options are available for velvet-1.2.10_2:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_velvet
- USES:
- perl5 gmake shebangfix tar:tgz python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|