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Port details on branch 2022Q2
vcftools Tools for working with VCF genomics files
0.1.16_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.1.16_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2016-02-26 17:08:07
Last Update: 2024-03-02 20:35:56
Commit Hash: ebba67d
License: LGPL3
WWW:
https://github.com/vcftools/vcftools
Description:
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (35 items)
Collapse this list.
  1. /usr/local/share/licenses/vcftools-0.1.16_2/catalog.mk
  2. /usr/local/share/licenses/vcftools-0.1.16_2/LICENSE
  3. /usr/local/share/licenses/vcftools-0.1.16_2/LGPL3
  4. bin/fill-aa
  5. bin/fill-an-ac
  6. bin/fill-fs
  7. bin/fill-ref-md5
  8. bin/vcf-annotate
  9. bin/vcf-compare
  10. bin/vcf-concat
  11. bin/vcf-consensus
  12. bin/vcf-contrast
  13. bin/vcf-convert
  14. bin/vcf-fix-newlines
  15. bin/vcf-fix-ploidy
  16. bin/vcf-indel-stats
  17. bin/vcf-isec
  18. bin/vcf-merge
  19. bin/vcf-phased-join
  20. bin/vcf-query
  21. bin/vcf-shuffle-cols
  22. bin/vcf-sort
  23. bin/vcf-stats
  24. bin/vcf-subset
  25. bin/vcf-to-tab
  26. bin/vcf-tstv
  27. bin/vcf-validator
  28. bin/vcftools
  29. lib/perl5/site_perl/FaSlice.pm
  30. lib/perl5/site_perl/Vcf.pm
  31. lib/perl5/site_perl/VcfStats.pm
  32. share/man/man1/vcftools.1.gz
  33. @owner
  34. @group
  35. @mode
Collapse this list.
Dependency lines:
  • vcftools>0:biology/vcftools
To install the port:
cd /usr/ports/biology/vcftools/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/vcftools
  • pkg install vcftools
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: vcftools
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1533330712 SHA256 (vcftools-vcftools-v0.1.16_GH0.tar.gz) = 575c13073efe65cbff6e2ab99eef12fe04536f5dc1f98de6674c848ca83cf302 SIZE (vcftools-vcftools-v0.1.16_GH0.tar.gz) = 246933

Packages (timestamps in pop-ups are UTC):
vcftools
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.1.16_20.1.16_20.1.160.1.16_20.1.16_2-0.1.16-
FreeBSD:13:quarterly0.1.16_10.1.16_10.1.160.1.16_10.1.16_10.1.16_10.1.16_10.1.16_1
FreeBSD:14:latest0.1.16_20.1.16_20.1.160.1.16_10.1.16_20.1.16-0.1.16
FreeBSD:14:quarterly0.1.16_10.1.16_1-0.1.16_10.1.16_10.1.16_10.1.16_10.1.16_1
FreeBSD:15:latest0.1.16_20.1.16_2n/a0.1.16_1n/a0.1.16_10.1.16_10.1.16_1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. pkgconf>=1.3.0_1 : devel/pkgconf
  3. autoconf>=2.71 : devel/autoconf
  4. automake>=1.16.5 : devel/automake
  5. perl5>=5.36<5.37 : lang/perl5.36
Runtime dependencies:
  1. perl5>=5.36<5.37 : lang/perl5.36
This port is required by:
for Run
  1. biology/ddocent

Configuration Options:
No options to configure
Options name:
biology_vcftools
USES:
autoreconf cpe gmake perl5 pkgconfig
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/vcftools/vcftools/tar.gz/v0.1.16?dummy=/
Collapse this list.

There are no commits on branch 2022Q2 for this port