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non port: biology/unanimity/Makefile

Number of commits found: 20

Sunday, 5 Jan 2020
10:26 antoine search for other commits by this committer
Mark a few ports broken (unfetchable)
Original commitRevision:522132 
Thursday, 26 Dec 2019
07:54 antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
Original commitRevision:520894 
Wednesday, 11 Dec 2019
17:53 jbeich search for other commits by this committer
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Original commitRevision:519824 
Thursday, 28 Nov 2019
05:46 jwb search for other commits by this committer
biology/unanimity: Remove erroneous BROKEN

Unsure why this was marked unfetchable.  Fetch works fine and the port is
still useful, though it cannot be upgraded to newer releases, which are
closed-source.
Original commitRevision:518557 
Sunday, 24 Nov 2019
15:53 jwb search for other commits by this committer
biology/unanimity and dependencies: Flag as no longer open source

PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs.
Original commitRevision:518334 
Wednesday, 6 Nov 2019
12:48 antoine search for other commits by this committer
Mark a few ports BROKEN, unfetchable
Original commitRevision:516880 
Monday, 19 Aug 2019
15:35 jbeich search for other commits by this committer
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
Original commitRevision:509290 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Friday, 12 Apr 2019
06:36 jbeich search for other commits by this committer
devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
Original commitRevision:498698 
Sunday, 24 Feb 2019
16:04 jwb search for other commits by this committer
biology/unanimity: Upgrade to 3.4.1

Minor fixes and enhancements upstream.
Original commitRevision:493769 
Friday, 22 Feb 2019
23:26 antoine search for other commits by this committer
biology/unanimity is not compatible with python 3.x

PR:		234633
Original commitRevision:493621 
Wednesday, 20 Feb 2019
01:36 jwb search for other commits by this committer
biology/unanimity: Upgrade to 3.4.0

Switch from cmake to new meson build system
Tests disabled for now pending work on unbundling googletest
Original commitRevision:493402 
Tuesday, 25 Dec 2018
20:25 tcberner search for other commits by this committer
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
Original commitRevision:488341 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
00:15 jbeich search for other commits by this committer
devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645
Original commitRevision:487266 
Tuesday, 18 Sep 2018
08:14 linimon search for other commits by this committer
More precisely specify USES=compiler to fix build on gcc-based
platforms such as powerpc64.

Tested on powerpc64, amd64.

Approved by:	portmgr (tier-2 blanket)
Original commitRevision:479990 
Saturday, 25 Aug 2018
22:54 jwb search for other commits by this committer
biology/unanimity: Upgrade to latest release, soften dep version requirements

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D16902
Original commitRevision:478089 
Thursday, 9 Aug 2018
06:58 jbeich search for other commits by this committer
devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
Original commitRevision:476723 
Friday, 22 Jun 2018
00:03 linimon search for other commits by this committer
Mark these ports as broken on aarch64.

Approved by:	portmgr (tier-2 blanket)
Original commitRevision:473010 
Tuesday, 24 Apr 2018
14:16 jwb search for other commits by this committer
biology/unanimity: Pacific Biosciences consensus library and applications

Reviewed by:    jrm
Differential Revision:  https://reviews.freebsd.org/D15172
Original commitRevision:468214 

Number of commits found: 20