[ 20:47 jhale  ]

• 478818 biology/ugene/Makefile
• 478818 biology/ugene/distinfo
• 478818 biology/ugene/files/patch-git_279756e4
• 478818 biology/ugene/files/patch-git_578c949
• 478818 biology/ugene/files/patch-src_corelibs_U2Private_U2Private.pro
• 478818 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTKeyboardDriverLinux.cpp
• 478818 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTMouseDriverLinux.cpp
• 478818 biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri
• 478818 biology/ugene/files/patch-src_plugins__3rdparty_phylip_src_phylip.h
• 478818 biology/ugene/files/patch-src_plugins__3rdparty_umuscle_src_MuscleWorkPool.cpp

Update to 1.31.0

PR:		229463
Approved by:	Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)

[ 21:30 rakuco  ]

• 458293 CHANGES
• 458293 MOVED
• 458293 Mk/Uses/qmake.mk
• 458293 Mk/bsd.qt.mk
• 458293 accessibility/Makefile
• 458293 accessibility/qt5-speech
• 458293 accessibility/qt5-speech/Makefile
• 458293 accessibility/qt5-speech/pkg-plist
• 458293 biology/ugene/files/patch-src_plugins__3rdparty_phylip_src_phylip.h
• 458293 cad/qelectrotech/Makefile

Update Qt5 ports to 5.9.3.

This took quite a lot of time because Qt's own build system underwent
several changes in 5.8.0 that took a while to adapt to.

And, of course, qt5-webengine is a behemoth that we need to patch like crazy
due to its bundling of Chromium. In fact, most of the Chromium patches in
qt5-webengine have been imported with no changes from www/chromium@433510
("www/chromium: update to 56.0.2924.87").

New port: accessibility/qt5-speech

Bigger changes to Qt5 ports we had to make:
- Qt now allows using a configure.json file to define configuration options
  and specify configuration checks that can be done when qmake is invoked.

(Only the first 15 lines of the commit message are shown above )