| Port details on branch 2022Q2 |
- ugene Integrated bioinformatics toolkit
- 40.1_1 biology
 =0      40.1_1Version of this port present on the latest quarterly branch. - Maintainer: h2+fbsdports@fsfe.org
- Port Added: 2013-02-23 04:51:12
- Last Update: 2024-01-10 08:16:01
- Commit Hash: 1b819e4
- Also Listed In: science
- License: GPLv2+
- WWW:
- https://ugene.net/
- Description:
- Unipro UGENE is multiplatform, open-source software with the main goal of
assisting molecular biologists without much expertise in bioinformatics to
manage, analyze, and visualize their data. UGENE integrates widely used
bioinformatics tools within one common user interface.
UGENE toolkit supports multiple biological data formats and allows the
retrieval of data from remote data sources. It provides visualization
modules for biological objects such as annotated genome sequences, Next
Generation Sequencing (NGS) assembly data, multiple sequence alignments,
phylogenetic trees, and 3D structures.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/ugene/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/ugene
- pkg install ugene
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: ugene
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1633934483
SHA256 (ugeneunipro-ugene-40.1_GH0.tar.gz) = 92b954449f697957c6b6b2da803ba6ae9ad546f44c584bbb2ab8600ac8b45a6e
SIZE (ugeneunipro-ugene-40.1_GH0.tar.gz) = 28791083
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- update-desktop-database : devel/desktop-file-utils
- update-mime-database : misc/shared-mime-info
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- x11.pc : x11/libX11
- xtst.pc : x11/libXtst
- qt5-buildtools>=5.15 : devel/qt5-buildtools
- lrelease : devel/qt5-linguisttools
- qt5-qmake>=5.15 : devel/qt5-qmake
- Runtime dependencies:
-
- bash : shells/bash
- update-desktop-database : devel/desktop-file-utils
- update-mime-database : misc/shared-mime-info
- x11.pc : x11/libX11
- xtst.pc : x11/libXtst
- libqtiff.so : graphics/qt5-imageformats
- Library dependencies:
-
- libGL.so : graphics/libglvnd
- libGLU.so : graphics/libGLU
- libsqlite3.so : databases/sqlite3
- libQt5Core.so : devel/qt5-core
- libQt5Gui.so : x11-toolkits/qt5-gui
- libQt5Network.so : net/qt5-network
- libQt5OpenGL.so : graphics/qt5-opengl
- libQt5PrintSupport.so : print/qt5-printsupport
- libQt5Script.so : devel/qt5-script
- libQt5ScriptTools.so : devel/qt5-scripttools
- libQt5Sql.so : databases/qt5-sql
- libQt5Svg.so : graphics/qt5-svg
- libQt5Test.so : devel/qt5-testlib
- libQt5Widgets.so : x11-toolkits/qt5-widgets
- libQt5Xml.so : textproc/qt5-xml
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for ugene-40.1_1:
OPENCL=off: Heterogeneous computing via OpenCL
===> Use 'make config' to modify these settings
- Options name:
- biology_ugene
- USES:
- desktop-file-utils gl qmake qt:5 shared-mime-info sqlite xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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