| Port details |
- treekin Efficient computation of RNA folding dynamics
- 0.5.1_3 biology
 =0      Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2019-06-15 20:37:22
- Last Update: 2021-10-15 15:50:24
- Commit Hash: c16b145
- License: LatticeLib
- Description:
- treekin computes folding dynamics on coarse grained version of an energy
landscape, where all conformations belonging to the same local minimum have
been contracted into a single macro-state.
WWW: https://www.tbi.univie.ac.at/RNA/Treekin/
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- treekin>0:biology/treekin
- To install the port:
- cd /usr/ports/biology/treekin/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/treekin
- pkg install treekin
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: treekin
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1560629735
SHA256 (Treekin-0.5.1.tar.gz) = aae56c1a746829b02a9b97c6a54d1d58348718d4ca585ef41a5dbdd41d5c9f06
SIZE (Treekin-0.5.1.tar.gz) = 222232
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- lapacke>0 : math/lapacke
- gfortran10 : lang/gcc10
- gmake>=4.3 : devel/gmake
- as : devel/binutils
- Runtime dependencies:
-
- gfortran10 : lang/gcc10
- Library dependencies:
-
- libblas.so : math/blas
- liblapack.so : math/lapack
- There are no ports dependent upon this port
- Configuration Options:
- No options to configure
- Options name:
- biology_treekin
- USES:
- blaslapack:netlib compiler:c++11-lang fortran gmake localbase:ldflags
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
|---|
15 Oct 2021 15:50:24
  0.5.1_3 |
Yuri Victorovich (yuri) |
biology/treekin: Unbreak
Recent Lapack API changes broke it.
PR: 259179 |
13 Jun 2021 17:48:12
0.5.1_3 |
Thierry Thomas (thierry) |
math/lapack: +math/blas et al., upgrade to 3.9.1
- Upgrade math/blas, math/cblas, math/lapack, math/lapacke and math/xlapack
to 3.9.1;
Latest release notes at <http://www.netlib.org/lapack/lapack-3.9.1.html>
- Chase this upgrade in biology/treekin;
- Add a test target;
- Remove a conflict with math/openblas (PR 244296);
- Fix the build with Gcc10 (PR 247485).
PR: 247542
Approved by: expr-run by antoine@ |
07 Apr 2021 08:09:01
0.5.1_2 |
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
06 Apr 2021 14:31:07
0.5.1_2 |
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
30 Jan 2020 14:17:44
  0.5.1_2 |
swills |
Fix math/openblas and bump dependent ports
* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]
This is correcting issues from r523749 [1][2][4] and r515970 [3]
PR: 231371
Reported by: build cluster [1]
Reported by: Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by: many [5]
Reviewed by: mat, bapt
Approved by: implicit, since this is a build fix |
26 Jul 2019 20:46:57
0.5.1_1 |
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
19 Jul 2019 08:49:33
0.5.1 |
pkubaj |
biology/treekin: fix build on GCC architectures
Needs C++11 compiler:
configure: error: *** A compiler with support for C++11 language features is
required.
Approved by: mentors (implicit approval) |
15 Jun 2019 20:37:06
0.5.1 |
yuri |
New port: biology/treekin: Efficient computation of RNA folding dynamics |
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