Port details on branch 2022Q2 |
- stacks Software pipeline for building loci from short-read sequences
- 2.4_2 biology =0 2.4_2Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2018-03-31 13:16:34
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: perl5 python
- License: GPLv2
- WWW:
- https://catchenlab.life.illinois.edu/stacks/
- Description:
- Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/stacks/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/stacks
- pkg install stacks
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: stacks
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1557519159
SHA256 (stacks-2.4.tar.gz) = 30093d688a2dc62a19ea42a58065f024c8279419439049bcde186703e75641c1
SIZE (stacks-2.4.tar.gz) = 10930616
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- python3.9 : lang/python39
- Runtime dependencies:
-
- python3.9 : lang/python39
- This port is required by:
- for Run
-
- biology/ddocent
Configuration Options:
- No options to configure
- Options name:
- biology_stacks
- USES:
- compiler:c++11-lang gmake python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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