Port details on branch 2022Q2 |
- seqtools Tools for visualising sequence alignments
- 4.44.1_4 biology
=0 4.44.1_4Version of this port present on the latest quarterly branch.
- BROKEN: unfetchable
DEPRECATED: Broken for more than 6 months This port expired on: 2020-05-05 IGNORE: is marked as broken: unfetchable
- Maintainer: pi@FreeBSD.org
- Port Added: 2013-11-10 11:01:14
- Last Update: 2020-05-05 15:38:12
- SVN Revision: 534093
- License: GPLv3
- WWW:
- http://www.sanger.ac.uk/science/tools/seqtools
- Description:
- A suite of tools for visualising sequence alignments.
Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.
Belvu is a multiple sequence alignment viewer and phylogenetic tool.
It has an extensive set of user-configurable modes to color residues
by conservation or by residue type, and some basic alignment editing
capabilities.
Dotter is a graphical dot-matrix program for detailed comparison
of two sequences. Every residue in one sequence is compared to every
residue in the other, with one sequence plotted on the x-axis and
the other on the y-axis.
WWW: http://www.sanger.ac.uk/science/tools/seqtools
-
cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- seqtools>0:biology/seqtools
- No installation instructions:
- This port has been deleted.
- PKGNAME: seqtools
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1478810582
SHA256 (seqtools-4.44.1.tar.gz) = 0e1dd7087d1180e434f0ea1aac21b8dfb5261195581ec3ba012abf0d1e39daa9
SIZE (seqtools-4.44.1.tar.gz) = 6922888
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- msgfmt : devel/gettext-tools
- pkgconf>=1.3.0_1 : devel/pkgconf
- as : devel/binutils
- x11.pc : x11/libX11
- Runtime dependencies:
-
- x11.pc : x11/libX11
- Library dependencies:
-
- libcurl.so : ftp/curl
- libsqlite3.so : databases/sqlite3
- libfontconfig.so : x11-fonts/fontconfig
- libfreetype.so : print/freetype2
- libintl.so : devel/gettext-runtime
- libatk-1.0.so : accessibility/atk
- libcairo.so : graphics/cairo
- libgdk_pixbuf-2.0.so : graphics/gdk-pixbuf2
- libglib-2.0.so : devel/glib20
- libintl.so : devel/gettext-runtime
- libgtk-x11-2.0.so : x11-toolkits/gtk20
- libpango-1.0.so : x11-toolkits/pango
- There are no ports dependent upon this port
Configuration Options:
- ===> The following configuration options are available for seqtools-4.44.1_4:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- N/A
- USES:
- compiler:c++14-lang gettext gnome libtool pkgconfig xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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