| non port: biology/seqan-apps/Makefile |
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SVNWeb
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Number of commits found: 37 |
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se)  ]    b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Mon, 25 Apr 2022
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[ 14:12 Piotr Kubaj (pkubaj) ] b3b6b26
biology/seqan-apps: remove obsolete USE_GCC
Instead use USES=compiler.
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Sun, 3 Oct 2021
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[ 17:47 Fernando Apesteguía (fernape) ] 07fb2d5 (Only the first 10 of 14 ports in this commit are shown above. )
*/*: Remove compiler:openmp from Mk/Uses/compiler.mk
The option implied a dependency on gcc but clang got openmp support long ago.
Remove compiler:openmp from Mk/Uses/compiler.mk
For ports using USE=compiler:openmp, just remove it and make them build with
clang.
Fix conditionals when necessary
Bump PORTREVISION where appropriate
If problem arises, they can be addressed by using USE_GCC=yes
An update to the Porter's Handbook will follow.
Approved by: portmgr (bapt)
Differential Revision: https://reviews.freebsd.org/D31971
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Mon, 21 Jun 2021
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[ 08:11 Piotr Kubaj (pkubaj) ] 4226927
biology/seqan-apps: fix packaging on armv7
Same issue as on i386.
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Sun, 20 Jun 2021
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[ 13:14 Piotr Kubaj (pkubaj) ] c584627
biology/seqan-apps: fix packaging on powerpc
Same issue as on i386.
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Wed, 11 Dec 2019
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[ 17:53 jbeich ]   (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Mon, 19 Aug 2019
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[ 15:35 jbeich ] (Only the first 10 of 412 ports in this commit are shown above. )
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Fri, 12 Apr 2019
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[ 06:36 jbeich ] (Only the first 10 of 392 ports in this commit are shown above. )
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303
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Tue, 25 Dec 2018
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[ 20:25 tcberner ] (Only the first 10 of 1277 ports in this commit are shown above. )
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
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Wed, 12 Dec 2018
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[ 01:35 gerald ] (Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
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[ 00:15 jbeich ] (Only the first 10 of 415 ports in this commit are shown above. )
devel/boost-*: update to 1.69.0
Changes: http://www.boost.org/users/history/version_1_69_0.html
PR: 232525
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D17645
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Fri, 9 Nov 2018
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[ 21:37 swills ]
biology/seqan-apps: fix build with GCC-based architectures
PR: 232045
Submitted by: Piotr Kubaj <pkubaj@anongoth.pl>
Approved by: maintainer timeout (h2+fbsdports@fsfe.org >1 month)
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Thu, 9 Aug 2018
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[ 06:58 jbeich ] (Only the first 10 of 404 ports in this commit are shown above. )
devel/boost-*: update to 1.68.0
- Switch to C++14 for libboost_system to support C++14 consumers
Changes: http://www.boost.org/users/history/version_1_68_0.html
PR: 229569
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D16165
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Sun, 29 Jul 2018
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[ 22:18 gerald ] (Only the first 10 of 1480 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
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Mon, 18 Jun 2018
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[ 19:14 linimon ]
Mark as broken on powerpc64 pending fix for PR 199603.
Approved by: portmgr (tier-2 blanket)
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Wed, 18 Apr 2018
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[ 13:57 jbeich ] (Only the first 10 of 388 ports in this commit are shown above. )
devel/boost-*: update to 1.67.0
Changes: http://www.boost.org/users/history/version_1_67_0.html
PR: 227427
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D15030
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Sat, 10 Mar 2018
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[ 06:21 yuri ]
biology/seqan-apps, biology/seqan: Update to 2.4.0
Port changes for biology/seqan-apps:
* Changed to DISTVERSION
* Updated COMMENT
* Added USES=compiler:openmp
* Removed BROKEN_xx (upstream now claims support for these architectures)
* Removed USE_GCC
* Added SSE4/AVX2/NATIVE SIMD options
Port changes for biology/seqan:
* Changed to DISTVERSION
* Added NO_ARCH
* Added PORTDOCS=*
* Updated do-install
PR: 225682
Submitted by: Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
Approved by: tcberner (mentor, implicit)
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Thu, 18 Jan 2018
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[ 04:11 jbeich ] (Only the first 10 of 356 ports in this commit are shown above. )
devel/boost-*: update to 1.66.0
Changes: http://www.boost.org/users/history/version_1_66_0.html
PR: 223922
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D13279
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Mon, 11 Dec 2017
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[ 07:18 linimon ]
Mark several ports newly broken on arm.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Mon, 25 Sep 2017
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[ 00:08 jbeich ] (Only the first 10 of 342 ports in this commit are shown above. )
devel/boost-*: update to 1.65.1
Changes: http://www.boost.org/users/history/version_1_65_1.html
PR: 218835
Approved by: maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month)
Tested by: jhibbits (on powerpc64, earlier version)
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D11582
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[ 00:05 jbeich ] (Only the first 10 of 327 ports in this commit are shown above. )
devel/boost-*: enable C++11 features
PR: 218835
Obtained from: https://github.com/DragonFlyBSD/DeltaPorts/pull/690
Approved by: maintainer timeout (2 months)
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D11582
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Sun, 10 Sep 2017
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[ 20:55 gerald ] (Only the first 10 of 1201 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
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Sun, 21 May 2017
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[ 23:37 linimon ]
It is possible that r441426 will fix the build problem on armv6. Give
it a try.
Approved by: portmgr (tier-2 blanket)
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Tue, 2 May 2017
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[ 06:48 jbeich ] (Only the first 10 of 336 ports in this commit are shown above. )
devel/boost-*: update to 1.64.0
Changes: http://www.boost.org/users/history/version_1_64_0.html
PR: 218835
Approved by: office (bapt)
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D10472
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Mon, 1 May 2017
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[ 19:24 linimon ] (Only the first 10 of 11 ports in this commit are shown above. )
Provide error messages for some ports failing on aarch64, and, in a
few cases, other tier-2 archs.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Sat, 1 Apr 2017
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[ 15:23 gerald ] (Only the first 10 of 1118 ports in this commit are shown above. )
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
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Sun, 26 Feb 2017
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[ 15:38 linimon ]
Mark a few more ports that create large logfiles broken on armv6.
Approved by: portmgr (tier-2 blanket)
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Mon, 9 Jan 2017
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[ 13:16 amdmi3 ] (Only the first 10 of 104 ports in this commit are shown above. )
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
Approved by: portmgr blanket
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Fri, 6 Jan 2017
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[ 08:45 jbeich ] (Only the first 10 of 324 ports in this commit are shown above. )
devel/boost-*: update to 1.63.0
Changes: http://www.boost.org/users/history/version_1_63_0.html
PR: 215598
Exp-run by: antoine
Approved by: office (bapt)
MFH: 2017Q1
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Fri, 25 Nov 2016
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[ 21:27 gerald ] (Only the first 10 of 12 ports in this commit are shown above. )
Replace USE_GCC=4.9+ by USE_GCC=yes, now that lang/gcc and the default
version for GCC in the Ports Collection have moved to GCC 4.9.
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Wed, 23 Nov 2016
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[ 12:45 jbeich ] (Only the first 10 of 353 ports in this commit are shown above. )
devel/boost-*: update to 1.62.0
- Enable `long double` C99 math usage
- Switch 9.x back to building with GCC
Changes: http://www.boost.org/users/history/
PR: 199601
Submitted by: Chen Xu, bapt, amdmi3, truckman (based on)
Reviewed by: rakuco (kde) (earlier version)
Exp-run by: antoine (3 tries), truckman (consumers only, earlier versions)
Approved by: bapt (office)
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Wed, 14 Sep 2016
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[ 19:38 pawel ]
- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
- Fix spelling in pkg-descr
PR: 212682 [1]
Submitted by: Hannes Hauswedell (maintainer) [1]
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Tue, 10 May 2016
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[ 00:52 junovitch ]
New port: biology/seqan-apps
SeqAn is an open source C++ library of efficient algorithms
and data structures for the analysis of sequences with the
focus on biological data.
This port contains applications built on SeqAn and developed
within the SeqAn project. Among them are famous read mappers
like RazerS and Yara, as well as many other tools. Some
applications are packaged seperately and the library
can be found at biology/seqan.
WWW: http://www.seqan.de/
PR: 204127
Submitted by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
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Number of commits found: 37 |
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