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non port: biology/seaview/Makefile

Number of commits found: 76

Friday, 12 Jan 2024
15:11 Baptiste Daroussin (bapt) search for other commits by this committer
MANPREFIX: eliminate its usage

While here move manpages to share/man
commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1 commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1 commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1 commit hash: d4329229fbe8ad0a96a1b9ec796d17cf512455d1 d432922
Friday, 28 Jul 2023
17:13 Daniel Engberg (diizzy) search for other commits by this committer
*/*: Bump jpeg-turbo users treewide

New major version 3.0.0
commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f commit hash: 664a2fa1e56e670a356f54c94389bdb47d868f3f 664a2fa
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Monday, 6 Dec 2021
01:02 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/seaview: Update version 5.0.4=>5.0.5

Relnotes: http://doua.prabi.fr/software/seaview_data/CHANGES
commit hash: 908f72ff107dea687ffd3bee46bb00028f34cdac commit hash: 908f72ff107dea687ffd3bee46bb00028f34cdac commit hash: 908f72ff107dea687ffd3bee46bb00028f34cdac commit hash: 908f72ff107dea687ffd3bee46bb00028f34cdac 908f72f
Saturday, 14 Aug 2021
08:58 Alexey Dokuchaev (danfe) search for other commits by this committer
biology/seaview: in preparation to FLTK update, unbreak the port

Ensure there is only one variable definition per each object, as
the C (and C++) standards mandated for years and is now enforced
by modern toolchains.
commit hash: 0ee21a35d161900f6f0333200c5139bece030139 commit hash: 0ee21a35d161900f6f0333200c5139bece030139 commit hash: 0ee21a35d161900f6f0333200c5139bece030139 commit hash: 0ee21a35d161900f6f0333200c5139bece030139 0ee21a3
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Wednesday, 17 Feb 2021
21:59 linimon search for other commits by this committer
Mark BROKEN in 13/14 (via latest llvm update).
Original commitRevision:565807 
Monday, 22 Jun 2020
17:34 bofh search for other commits by this committer
biology/seaview: Update version 5.0.3=>5.0.4

Relnotes:	http://doua.prabi.fr/software/seaview_data/CHANGES
Original commitRevision:539893 
Sunday, 14 Jun 2020
09:24 bofh search for other commits by this committer
biology/seaview: Update version 5.0.2=>5.0.3

Relnotes:	http://doua.prabi.fr/software/seaview_data/CHANGES
Original commitRevision:538720 
Sunday, 22 Mar 2020
16:54 bofh search for other commits by this committer
biology/seaview: Update version 5.0=>5.0.2

Relnotes:	http://doua.prabi.fr/software/seaview
Original commitRevision:528926 
Wednesday, 5 Feb 2020
18:35 bofh search for other commits by this committer
biology/seaview: Update version 4.7=>5.0

Relnotes:http://doua.prabi.fr/software/seaview
Original commitRevision:525314 
Monday, 4 Nov 2019
21:08 zeising search for other commits by this committer
Add USES=xorg USES=gl, ports categories b

Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
Original commitRevision:516742 
Sunday, 22 Jul 2018
03:22 bofh search for other commits by this committer
biology/seaview: Updatye version 4.6.5=>4.7

Relnotes:	http://doua.prabi.fr/software/seaview_data/CHANGES
Original commitRevision:475082 
Tuesday, 24 Apr 2018
12:31 bofh search for other commits by this committer
biology/seaview: Update version 4.6.3=>4.6.5

- Pet portlint
Original commitRevision:468198 
Friday, 5 Jan 2018
17:40 bofh search for other commits by this committer
biology/seaview: Update version 4.6.2=>4.6.3

- Added pkg-plist to pet portlint

Relnotes:	http://doua.prabi.fr/software/seaview_data/CHANGES
Original commitRevision:458157 
Friday, 21 Jul 2017
17:33 bofh search for other commits by this committer
biology/seaview: Update version 4.6.1=>4.6.2
Original commitRevision:446346 
Tuesday, 11 Apr 2017
18:58 bofh search for other commits by this committer
biology/seaview: Update version 4.6=>4.6.1

- Add PORTSCOUT to ignore non-existent 4.6.1.3 version
Original commitRevision:438306 
Friday, 10 Jun 2016
11:06 bofh search for other commits by this committer
biology/seaview: Update version 4.5.4.8=>4.6

- UNBREAK
Original commitRevision:416671 
Friday, 3 Jun 2016
16:44 antoine search for other commits by this committer
Deprecate ports broken for more than 6 months
Original commitRevision:416324 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Monday, 2 Nov 2015
08:14 marino search for other commits by this committer
biology/seaview: Broken, Does not fetch (checksum mismatch)
Original commitRevision:400638 
Tuesday, 20 Oct 2015
11:51 bofh search for other commits by this committer
biology/seaview: Update version 4.5.4.7=>4.5.4.8
Original commitRevision:399820 
Thursday, 1 Oct 2015
10:02 bofh search for other commits by this committer
biology/seaview: Update version 4.5.4.6=>4.5.4.7
Original commitRevision:398266 
Tuesday, 15 Sep 2015
14:44 bofh search for other commits by this committer
biology/seaview: Update version 4.5.4.4=>4.5.4.6
Original commitRevision:396964 
Friday, 22 May 2015
11:09 bofh search for other commits by this committer
biology/seaview: Update version 4.5.4=>4.5.4.4
Original commitRevision:387019 
Saturday, 11 Apr 2015
15:49 marino search for other commits by this committer
biology/seaview: Unbreak -- it fetches fine

The second MASTER_SITES entry worked fine, so this must have been a
transient fetch problem.  I removed the first entry which is still
failing though.

Approved by:	blanket
Original commitRevision:383812 
Sunday, 5 Apr 2015
17:55 bapt search for other commits by this committer
Mark as broken unfetchable ports
Original commitRevision:383309 
Tuesday, 24 Mar 2015
10:15 bofh search for other commits by this committer
biology/seaview: Update version 4.5.3.4=>4.5.4

- Remove dependency for libpdf as removed by upstream
Original commitRevision:382078 
Monday, 16 Mar 2015
12:07 bofh search for other commits by this committer
biology/seaview: UNBREAK

- Update version 4.5.2=>4.5.3.4
- Add LICENSE (GPLv3)
- Remove PDFLIBS as OPTIONS as it is no loner an optional requirement

PR:		198602
Submitted by:	pi
Approved by:	bapt marino (implicit)
Original commitRevision:381381 
Saturday, 21 Feb 2015
07:35 antoine search for other commits by this committer
Mark BROKEN: Fails to link, tries to use internal fltk symbols

c++ -o seaview   seaview.o custom.o use_mase_files.o regions.o load_seq.o
align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o
concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o
pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o
Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o
dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o  \
      -L/usr/local/lib -lfltk_images -lfltk  \
     -lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \
         -lX11 -lm -lz -pthread
seaview.o: In function `clipboard_contains_alignment(char const*)':
seaview.cxx:(.text+0x1c14): undefined reference to `fl_selection_buffer'

Reported by:	pkg-fallout
Original commitRevision:379482 
Wednesday, 24 Dec 2014
00:14 bofh search for other commits by this committer
Change my non-FreeBSD MAINTAINER mail to bofh@

Approved by:	bapt
Original commitRevision:375378 
Saturday, 20 Dec 2014
17:27 bapt search for other commits by this committer
Cleanup plist
Original commitRevision:375014 
Wednesday, 10 Sep 2014
20:50 gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Original commitRevision:367888 
Wednesday, 4 Jun 2014
06:28 miwi search for other commits by this committer
- Update to 4.5.2
- Pass maintainership to submitter

PR:		190564
Original commitRevision:356437 
Wednesday, 21 May 2014
05:40 miwi search for other commits by this committer
- Update to 4.5.1

PR:		187975
Submitted by:	Ports Fury
Original commitRevision:354710 
Thursday, 27 Feb 2014
08:46 miwi search for other commits by this committer
- Stage support
- Update to version 4.4.3

PR:		187041
Submitted by:	ports fury
Original commitRevision:346262 
Wednesday, 11 Dec 2013
14:43 bapt search for other commits by this committer
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
Original commitRevision:336171 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Wednesday, 14 Aug 2013
22:35 ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
Original commitRevision:324744 
Monday, 15 Jul 2013
14:49 miwi search for other commits by this committer
- Update to 4.4.2

PR:		180515
Submitted by:	Ports Fury
Original commitRevision:323044 
Tuesday, 26 Mar 2013
01:08 miwi search for other commits by this committer
- Update to 4.4.1

PR:		177257
Submitted by:	Ports Fury
Original commitRevision:315253 
Wednesday, 23 Jan 2013
15:00 makc search for other commits by this committer
Bump PORTREVISION after DESKTOP_ENTRIES update
Original commitRevision:310871 
Monday, 7 Jan 2013
02:07 makc search for other commits by this committer
- Update DESKTOP_ENTRIES:
  * rephrase Comment field or use port ${COMMENT} if appropriate
  * adjust Icon field according to the Desktop Entry Specification
  * update Categories field: remove deprecated category Application;
    set main category, if missing
- Remove indefinite article and/or rephrase COMMENT
- Trim Makefile header
- Other minor changes
Original commitRevision:310020 
Tuesday, 30 Oct 2012
20:31 pawel search for other commits by this committer
- Update to version 4.4.0
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES

While here:
- Add missing deps
- Add desktop entry

PR:		ports/172498
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
Original commitRevision:306709 
Monday, 1 Oct 2012
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Friday, 1 Jun 2012
05:26 dinoex search for other commits by this committer
- update png to 1.5.10
Original commit
Tuesday, 10 Jan 2012
11:41 ale search for other commits by this committer
Chase pdflib.so version and bump PORTREVISION accordingly.
Original commit
Thursday, 17 Nov 2011
13:22 gahr search for other commits by this committer
- unbreak

Feature safe:   yes
Original commit
Friday, 4 Nov 2011
22:14 pav search for other commits by this committer
- Mark BROKEN: does not compile with new fltk

Reported by:    pointyhat
Original commit
Sunday, 28 Mar 2010
06:47 dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Original commit
Tuesday, 23 Mar 2010
21:14 gahr search for other commits by this committer
- Chase x11-toolkits/fltk update
Original commit
Friday, 5 Feb 2010
11:46 dinoex search for other commits by this committer
- update to jpeg-8
Original commit
Friday, 31 Jul 2009
13:57 dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Original commit
Sunday, 23 Mar 2008
16:44 miwi search for other commits by this committer
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Bump PORTREVISION

Approved by:    portmgr (xorg cleanup)
Original commit
Saturday, 19 May 2007
20:32 flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Original commit
Monday, 9 Oct 2006
08:18 ale search for other commits by this committer
Chase pdf library and bump PORTREVISION.
Original commit
Wednesday, 5 Apr 2006
01:58 mnag search for other commits by this committer
- Update to 2006.02.13

PR:             95281
Submitted by:   maintainer
Original commit
Thursday, 9 Feb 2006
10:33 lawrance search for other commits by this committer
Update to 2006.01.25.

PR:             ports/93051
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Saturday, 10 Dec 2005
14:04 tdb search for other commits by this committer
- New upstream version; two patches incorporated.

PR:             90140
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)
Original commit
Tuesday, 6 Dec 2005
15:13 tdb search for other commits by this committer
- Update to 2005.13.07 to make fetchable again

PR:             89976
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:    clement (mentor)
Original commit
Wednesday, 16 Nov 2005
04:36 kris search for other commits by this committer
BROKEN: Size mismatch
Original commit
Saturday, 18 Dec 2004
15:14 sem search for other commits by this committer
- Update to 2004.12.16

PR:             ports/75205
Submitted by:   maintainer
Original commit
Saturday, 11 Dec 2004
03:58 sem search for other commits by this committer
Not a real update with the last patch.
The real update here.
Original commit
03:49 sem search for other commits by this committer
- This update brings seaview to the latest release (dated 09.24.04
in the FTP site).

- While here add a modeline for vi, and fix a tab (cosmetic)

- Make portlint happy.

PR:             ports/74897
Submitted by:   maintainer
Original commit
Tuesday, 18 May 2004
14:59 eik search for other commits by this committer
unbreak, only minor changes in the distfiles (see PR)

Since the distfile has no version number, put it in
DIST_SUBDIR=    ${PORTNAME}-${PORTVERSION}

PR:             66817
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
Original commit
Monday, 12 Apr 2004
03:37 kris search for other commits by this committer
BROKEN: Checksum mismatch
Original commit
Thursday, 29 Jan 2004
10:09 krion search for other commits by this committer
- Update to version 2003.11.25
Original commit
Monday, 17 Nov 2003
13:36 krion search for other commits by this committer
- Update to new version 2003.11.17
- Unbreak this port
Original commit
Thursday, 6 Nov 2003
23:15 anholt search for other commits by this committer
Mark BROKEN: distfile has changed.
Original commit
Thursday, 22 May 2003
05:59 hoek search for other commits by this committer
Upgrade to 2003.01.21.  Appears to only add some more file export/print
options.  Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
Original commit
Thursday, 20 Feb 2003
16:51 knu search for other commits by this committer
De-pkg-comment.
Original commit
Wednesday, 20 Nov 2002
14:03 ijliao search for other commits by this committer
unbroke by upgrade to 20021018
drop maintainership

PR:             45466
Submitted by:   old maintainer
Original commit
Thursday, 4 Jul 2002
09:20 mikeh search for other commits by this committer
Bump XForms lib. version.
Original commit
Saturday, 18 May 2002
02:36 kris search for other commits by this committer
BROKEN: Checksum is incorrect
Original commit
Sunday, 8 Oct 2000
11:23 asami search for other commits by this committer
Change PKGDIR from pkg/ to .  Also fix places where ${PKGDIR} is   spelled out
(many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type   fixes that
shouldn't have been necessary) and the string "/pkg/"   appear.    
Original commit

Number of commits found: 76