| non port: biology/samtools/distinfo |
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SVNWeb
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Number of commits found: 15 |
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Fri, 24 Feb 2023
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[ 23:27 Jason W. Bacon (jwb)  ]    1993bfc
biology/samtools: Update to 1.17
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
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Thu, 5 Jan 2023
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[ 23:17 Jason W. Bacon (jwb) ] 193567c
biology/samtools: Update to 1.16.1
New "reference" subcommand to extract CRAM features (1.16)
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
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Sat, 26 Feb 2022
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[ 15:04 Jason W. Bacon (jwb) ] 822ec74
biology/samtools: Update to 1.15
Several small enhancements and a few bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
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Sat, 18 Dec 2021
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[ 17:56 Jason W. Bacon (jwb) ] d0228a8
biology/samtools: Update to 1.14
Several enhancements and minor bug fixes
Changes: https://github.com/samtools/samtools/tags
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Mon, 12 Jul 2021
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[ 13:24 Jason W. Bacon (jwb) ] 1c1b494
biology/samtools: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases/tag/1.13
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Sat, 20 Mar 2021
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[ 17:14 jwb ]   (Only the first 10 of 17 ports in this commit are shown above.  )
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thu, 5 Nov 2020
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[ 20:32 jwb ]
biology/samtools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/samtools/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 18:22 jwb ]
biology/samtools: Upgrade to 1.10
Numerous bug fixes and enhancements:
https://github.com/samtools/samtools/releases/tag/1.10
Take maintainership per ports/248089
PR: ports/248089
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Thu, 2 Aug 2018
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[ 19:28 fernape ]
biology/samtools: update to 1.9
PR: 230171
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16569
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ] (Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Thu, 26 May 2016
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[ 20:28 pi ]
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 25 Dec 2015
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[ 01:31 junovitch ] (Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Wed, 6 May 2015
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[ 15:16 mat ] (Only the first 10 of 348 ports in this commit are shown above. )
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight
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Fri, 6 Mar 2015
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[ 12:53 robak ]
biology/samtools: update 1.1 -> 1.2
PR: 198292
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Mon, 15 Dec 2014
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[ 21:59 pawel ]
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
PR: 195592
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found: 15 |
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