| non port: biology/samtools/distinfo |
Number of commits found: 15 |
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Friday, 24 Feb 2023
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23:27 Jason W. Bacon (jwb) 
biology/samtools: Update to 1.17
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
    1993bfc |
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Thursday, 5 Jan 2023
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23:17 Jason W. Bacon (jwb)
biology/samtools: Update to 1.16.1
New "reference" subcommand to extract CRAM features (1.16)
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
193567c |
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Saturday, 26 Feb 2022
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15:04 Jason W. Bacon (jwb)
biology/samtools: Update to 1.15
Several small enhancements and a few bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
822ec74 |
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Saturday, 18 Dec 2021
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17:56 Jason W. Bacon (jwb)
biology/samtools: Update to 1.14
Several enhancements and minor bug fixes
Changes: https://github.com/samtools/samtools/tags
d0228a8 |
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Monday, 12 Jul 2021
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13:24 Jason W. Bacon (jwb)
biology/samtools: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases/tag/1.13
1c1b494 |
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Saturday, 20 Mar 2021
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17:14 jwb
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thursday, 5 Nov 2020
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20:32 jwb
biology/samtools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/samtools/releases/tag/1.11
Reported by: portscout
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Monday, 3 Aug 2020
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18:22 jwb
biology/samtools: Upgrade to 1.10
Numerous bug fixes and enhancements:
https://github.com/samtools/samtools/releases/tag/1.10
Take maintainership per ports/248089
PR: ports/248089
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Thursday, 2 Aug 2018
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19:28 fernape
biology/samtools: update to 1.9
PR: 230171
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16569
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Wednesday, 25 Oct 2017
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10:19 pizzamig
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Thursday, 26 May 2016
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20:28 pi
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Friday, 25 Dec 2015
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01:31 junovitch
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Wednesday, 6 May 2015
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15:16 mat
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight
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Friday, 6 Mar 2015
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12:53 robak
biology/samtools: update 1.1 -> 1.2
PR: 198292
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Monday, 15 Dec 2014
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21:59 pawel
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
PR: 195592
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found: 15 |
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